These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 873 fasta sequence [CCGCGGCGTTAGATCGAAATATTCGTTTGAAGAAAACATTCGGTGCTAATAGTGCTTGTCTAAATAGTGAAAGCGTACATTCTGCGTTTCATTCATTCATCGCAATCCACTTACGTGACAGTTAAAAGATA-TCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCTGATTGCCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTGCCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCAGATTCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAGGTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCTAGACATGAAGTCCCTGAGATTGGACAAAAGCAACCCGCAGCATCATGTTTATCTCATCCCGTTAAACTACATTAATACTGCCTACGATATGATCCTGATCTATTTACTGCTTTTCTGTATCTTTTTGCATTGAAGATATTGTGTTATTGAAATAATCAATTAAAGCCAATAATTCAGTAATCTTAACAGTTTAACCAGTTTTCGTTCGATAAAACTGCTTGACTTAATCTCGTTTAGGATGGAGTTACATTATGTATACAGCATTAAGTAACCTTCCGATTAACCTTTTCTAGATTTAAAAAAAAAAAACTAAATTCACCTACAGTCACTTCAACTTCAATGTGGAGCAACTATCTGAAATGAACAAAAAACAGGACAAGAGAGAACAAAATAAACCTATTTATATCAATA] [+] EMBL BM643631 [CCGCGGCGTTAGATCGAAATATTCGTTTGAAGAAAACATTCGGTGCTAATAGTGCTTGTCTAAATAGTGAAAGCGTACATTCTGCGTTTCATTCATTCATCGCAATCCACTTACGTGACAGTTAAAAGATA TCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCTGATTGCCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTGCCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCAGATTCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAGGTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCTAGACATGAAGTCCCTGAGA ] [+] EMBL BX609371 [ CTAAATAGTGAAAGCGTACATTCTTCGTTTCATTCATTCATCGCAATCCACTTACGTGACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCTGATTGCCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTGCCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCAGATTCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAGGTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCTAGACATGAAGT CCTGAGATTGGACAAAAGCAACCCGCAGCATCATGTTTATCTCATCCCGTTAAACTACATTAATACTGCCTACGATATGATCCTGATCTATTTACTGCTTTTCTGTATCTTTTTGCATTGAAGATATTGTGTTATTGAAATAATCAATTAAAGCCAATAATTCAGTAATCTTAACAGTTTAACCAGTTTTCGTTCGATAAAACTGCTTGACTTAATCTCGTTTAGGATGGAGTTACATTATGTATACAGCATTAAGTAACCTTCCGATTAACCTTTTCTAGATTTAAAAAAAAAAAACTAAATTCACCTACAGTCACTTCAACTTCAATGTGGAGCAACTATCTGAAATGAACAAAAAACAGGACAAGAGAGAACAAAATAAACCTATTTATATCAATA] consensusID : consensus_7511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 732 fasta sequence [CCGAAAACATTCGGTGCTAATAGTGCTTGTCTAAATAGTGAAAGCGTACATTCTGCGTTTCATTCATTCATCGCAATCCACTTACGTGACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCTGATTGCCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTGCCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCAGATTCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAGAATCTTTACAGGTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCTAGACATGAAGTCCTGAGATTGGACAAAAGCAACCCGCAGCATCATGTTTATCTCATCCCGTTAAACTACATTAATACTGCCTACGATATGATCCTGATCTATTTACTGCTTTTCTGTATCTTTTTGCATTGAAGATATTGTGTTATTGAAATAATCAATTAAAGCCAATAATTCAGTAATCTTAACAGTTTAA-CCAGTTTTCGTTCGATAAAACTGCTTGACTTAATCTCGTTTAGGATGGAGTTACATTATGTATACAGCA-TTAAGTAACCTTCCGATTAACCTTT] [+] EMBL BM653179 [CCGAAAACATTCGGTGCTAATAGTGCTTGTCTAAATAGTGAAAGCGTACATTCTGCGTTTCATTCATTCATCGCAATCCACTTACGTGACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCTGATTGCCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTGCCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCAGATTCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAGAATCTTTACAGGTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCTAGACATGAAGTCCTGAGATTGGACAAAAGCAACCCGCAGCATCATGTTTATCTCATCCCGTTAAACTACATTAATACTGCCTACGATATGATCCTGATCTATTTACTGCTTTTCTGTATCTTTTTGCATTGAAGATATTGTGTTATTGAAATAATCAATTAAAGCCAATAATTCAGTAATCTTAACAGTTTAA CCAGTTTTCGTTCGATAAAACTGCTTGACTTAATCTCGTTTAGGAT ] [+] EMBL CNS08L1D [ AAACATTCGGTGCTAATAGTGCTTGTATAAATAGTGAAAGCGTACATTCTGCGTTTCATTCATTCATCGCCCTCCACTTACG ] [+] EMBL BX624448 [ GTTTCATCCATTCATCGCAATCCACTTACGTGACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCTGATTGCCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTGCCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCAGATTCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAGAATCTTTACAGGTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCTAGACATGAAGTCCTGAGATTGGACAAAAGCAACCCGCAGCATCATGTTTATCTCATCCCGTTAAACTACATTAATACTGCCTACGATATGATCCTGATCTATTTACTGCTTTTCTGTATCTTTTTGCATTGAAGATATTGTGTTATTGAAATAATCAATTAAAGCCAATAATTCAGTAATCTTAACAGNTTAACCCAGTTTTCGTTCGATAAAACTGCTTGACTTAATCTCGGTTAGGATGGAGTTACATTATGTATACAGCATTTAAGTAACCTTCCGATTA ] [+] EMBL BX612294 [ ACTTACGTGACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCTGATTGCCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTGCCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCTGATTCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAGAATCTTTACAGGTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCTAGACATGAAGTCCTGAGATTGGACAAAAGCAACCCGCAGCATCATGTTTATCTCATCCCGTTAAACTACATTAATACTGCCTACGATATGATCCTGATCTATTTACTGCTTTTCTGTATCTTTTTGCATTGAAGATATTGTGTTATTGAAATAATCAATTAAAGCCAATAATTCAGTAATCTTAACAGTTTAA CCAGTTTTCGTTCGATAAAACTGCTTGACTTAATCTCGTTTAGGATGGAGTTACATTATGTATACAGCA TTAAGTAACCTTCCGATTAACCTTT] consensusID : consensus_7511#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [NGAGGNAGATTCGAGCAAGAATCGCGCNCGAGGNNATGCCGGTGCTAATAGTGCTTGTCNCAAATAGTGAAAGCGTACATTCTGCGGTTTCATCCATTCATCGCAAGTCCACTTACGTGACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATNGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCATGAATTAGCCGACCTNTAGCC] [+] EMBL BX469355 [NGAGGNAGATTCGAGCAAGAATCGCGCNCGAGGNNATGCCGGTGCTAATAGTGCTTGTCNCAAATAGTGAAAGCGTACATTCTGCGGTTTCATCCATTCATCGCAAGTCCACTTACGTGACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATNGCGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCATGAATTAGCCGACCTNTAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7511#0 CCGCGGCGTTAGATCGAAATATTCGTTTGAAGAAAACATTCGGTGCTAATAGTGCTTGTC 60 consensus_7511#1 -----------------------------CCGAAAACATTCGGTGCTAATAGTGCTTGTC 31 consensus_7511#2 -NGAGGNAGATTCGAGCAAGAATCGCGCNCGAGGNNATGCCGGTGCTAATAGTGCTTGTC 59 ******************** consensus_7511#0 T-AAATAGTGAAAGCGTACATTCTGCG-TTTCATTCATTCATCGCAA-TCCACTTACGTG 117 consensus_7511#1 T-AAATAGTGAAAGCGTACATTCTGCG-TTTCATTCATTCATCGCAA-TCCACTTACGTG 88 consensus_7511#2 NCAAATAGTGAAAGCGTACATTCTGCGGTTTCATCCATTCATCGCAAGTCCACTTACGTG 119 ************************* ****** ************ ************ consensus_7511#0 ACAGTTAAAAGATAT-CTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGG 176 consensus_7511#1 ACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATGG 148 consensus_7511#2 ACAGTTAAAAGATATTCTAGGTTTCTGAGCGATCATTCATACACTAGATCTCGACGATNG 179 *************** ****************************************** * consensus_7511#0 CGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCC-TGATT--G 233 consensus_7511#1 CGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCC-TGATT--G 205 consensus_7511#2 CGTCAGGCACTTTTACTCAGCGTTTGCTGGTGGCTCTTATGATATTCGCCCATGAATTAG 239 *************************************************** *** * * consensus_7511#0 CCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTG 293 consensus_7511#1 CCGACCTTAGCACACTAGTTGCAGCCCGACCGCAAGATAGTGACGCTGCCTCTGTAGCTG 265 consensus_7511#2 CCGACCTNTAGCC----------------------------------------------- 252 ******* * consensus_7511#0 CCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCAGAT 353 consensus_7511#1 CCGCAATTAGATACCTCCAGGAGCTTGAAACTAAGCATGCCCAACATGCTAGACCCAGAT 325 consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 TCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAG---- 409 consensus_7511#1 TCGGAAAGCGTGGTGGATATCTTAACCCGGCAATATTTGGGCAGGATGAACAGGAGAATC 385 consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 -------GTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCT 462 consensus_7511#1 TTTACAGGTTGATTGGCAGGATTCAACATTTTCGAGATGAACAGCTACCAACAAATATCT 445 consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 AGACATGAAGTCCCTGAGATTGGACAAAAGCAACCCGCAGCATCATGTTTATCTCATCCC 522 consensus_7511#1 AGACATGAAGTCC-TGAGATTGGACAAAAGCAACCCGCAGCATCATGTTTATCTCATCCC 504 consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 GTTAAACTACATTAATACTGCCTACGATATGATCCTGATCTATTTACTGCTTTTCTGTAT 582 consensus_7511#1 GTTAAACTACATTAATACTGCCTACGATATGATCCTGATCTATTTACTGCTTTTCTGTAT 564 consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 CTTTTTGCATTGAAGATATTGTGTTATTGAAATAATCAATTAAAGCCAATAATTCAGTAA 642 consensus_7511#1 CTTTTTGCATTGAAGATATTGTGTTATTGAAATAATCAATTAAAGCCAATAATTCAGTAA 624 consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 TCTTAACAGTTTAACCAGTTTTCGTTCGATAAAACTGCTTGACTTAATCTCGTTTAGGAT 702 consensus_7511#1 TCTTAACAGTTTAACCAGTTTTCGTTCGATAAAACTGCTTGACTTAATCTCGTTTAGGAT 684 consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 GGAGTTACATTATGTATACAGCATTAAGTAACCTTCCGATTAACCTTTTCTAGATTTAAA 762 consensus_7511#1 GGAGTTACATTATGTATACAGCATTAAGTAACCTTCCGATTAACCTTT------------ 732 consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 AAAAAAAAACTAAATTCACCTACAGTCACTTCAACTTCAATGTGGAGCAACTATCTGAAA 822 consensus_7511#1 ------------------------------------------------------------ consensus_7511#2 ------------------------------------------------------------ consensus_7511#0 TGAACAAAAAACAGGACAAGAGAGAACAAAATAAACCTATTTATATCAATA 873 consensus_7511#1 --------------------------------------------------- consensus_7511#2 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||