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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 725 fasta sequence
[CCGCGCATATGTCTAAGCAGATAAAAACAATTATTTGTGTTTTGCAAAACTCTTACGATTTACCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACATTCGACGCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTATCTGGATAATACCCAGAATGATTGGGACAACGTGCATTTAAATGGAGATTTAAAACAAATACTTGCTATGTACTAACTAATATGATAATGTTCGTTTGTCGTCTACGATAAAATACATTTATGATGAAATACAAAAGTG]
[+] EMBL BM601028 [CCGCGCATATGTCTAAGCAGATAAAAACAATTATTTGTGTTTTGCAAAACTCTTACGATTTACCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGA ]
[+] EMBL BM617075 [ ccgTTACGATTTACCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCGTCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACATTCGACGCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTATCTGGATAATACCCAGAATGATTGGGACAACGTGCATTTAAATGGAGATTTAAAACAAAT ]
[+] EMBL BM626320 [ ccgCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACATTCGACGCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTATCTGGATAATACCCAGAATGATTGGGACAACGTGCATTTAAATGGAGATTTAAAACAAATACTTGCTATGTACTAACTAATATGATAATGTTCGTTTGTCGTCTACGATAAAATACATTTATGATG ]
[+] EMBL BX617858 [ TTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACATTCGACGCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTATCTGGATAATACCCAGAATGATTGGGACAACGTGCATTTAAATGGAGATTTAAAACAAATACTTGCTATGTACTAACTAATATGATAATGTTCGTTTGTCGTCTACGATAAAATACATTTATGATGAAATACAAAAGTG]
consensusID : consensus_7512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 662 fasta sequence
[CCGCCCACGCGTCCGGCCAAATCATGGCAAGCTCCATTTCAAGTGGTTTTCGTGAGGATTGTTCCGAATTTTTGTGTGATTTTGCAAAATTGAAAGCAACAGATTATCAAACATTTAGTCAAGAATGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAATGGCAGAATATTTAGGAGAAATCTTTTATACAGTGAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAACATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCATGGGAAATTTTGGAAATGGGTTATAACGAAATGAAGGAAGCCCTGGACGATAATGGTGTAACCAC-GTGAGA]
[+] EMBL BM648656 [CCGCCCACGCGTCCGGCCAAATCATGGCAAGCTCCATTTCAAGTGGTTTTCGTGAGGATTGTTCCGAATTTTTGTGTGATTTTGCAAAATTGAAAGCAACAGATTATCAAACATTTAGTCAAGAATGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAATGGCAGAATATTTAGGAGAAATCTTTTATACAGTGAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAACATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCATGGGAAATTTTGGAAATGGGTTATAACGAAATGAAGGAAGCCCTGGACGATAATGGTGTAACCAC ]
[+] EMBL AL697381 [ ccgagGTTAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAAGATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCAT GGAAATTTTGGAAATGGGTTATTACGAAATGAAGGAAGCCCTGGACGATAATGGTGTAA CACGGTGAGA]
consensusID : consensus_7512#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[TGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAATGGNNGAATATTTAGGAGAAATCTTTTATACAGTGAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAACATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCATGGAAATTTTGGAAATGGGTTATAACGAAATGAAGGAAGCCCTGGACGCAAAGTATCCTCATCTAGCGGTAAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCCTCTTTCATCAGTGNCTTCATGTG]
[+] EMBL BX619994 [TGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAATGGNNGAATATTTAGGAGAAATCTTTTATACAGTGAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAACATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCATGGAAATTTTGGAAATGGGTTATAACGAAATGAAGGAAGCCCTGGACGCAAAGTATCCTCATCTAGCGGTAAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCCTCTTTCATCAGTGNCTTCATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7512#1 CCGCCCACGCGTCCGGCCAAATCATGGCAAGCTCCATTTCAAGTGGTTTTCGTGAGGATT 60
consensus_7512#2 ------------------------------------------------------------
consensus_7512#0 ------------------------------------------------------------
consensus_7512#1 GTTCCGAATTTTTGTGTGATTTTGCAAAATTGAAAGCAACAGATTATCAAACATTTAGTC 120
consensus_7512#2 ------------------------------------------------------------
consensus_7512#0 ------------CCGCGCATATGTCTAAGCAGATAAAAACAATTATTTGTGTTTTGCAAA 48
consensus_7512#1 AAGAATGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAA 180
consensus_7512#2 -----TGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAA 55
consensus_7512#0 ACTCTTACGATTTACCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAA 108
* * * * ** * * * ** * **** * * * * ***
consensus_7512#1 TGGCAGAATATTTAGGAGAAATCTTTTAT---ACAGTGAAAAGAATGTTTATCGCCTCAA 237
consensus_7512#2 TGGNNGAATATTTAGGAGAAATCTTTTAT---ACAGTGAAAAGAATGTTTATCGCCTCAA 112
consensus_7512#0 TTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAA 168
* ** ** * * * ** * ***** * ** ** * ** **
consensus_7512#1 ATAATCCATTCGA-ACGAATAGGATCGTTTTACCTACTCTATA-------CGTTGTATTT 289
consensus_7512#2 ATAATCCATTCGA-ACGAATAGGATCGTTTTACCTACTCTATA-------CGTTGTATTT 164
consensus_7512#0 ATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGT 228
** * * **** * * ** * ** * * * * * * *
consensus_7512#1 TA-----AACAGCCGTTATTTATGTTCAG-CAAAATACGACTGACTTTGACAGAG-TGGC 342
consensus_7512#2 TA-----AACAGCCGTTATTTATGTTCAG-CAAAATACGACTGACTTTGACAGAG-TGGC 217
consensus_7512#0 CGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAAC 288
*** ** * ****** * ** * * * * * ** * *
consensus_7512#1 GTATGATGAAAACATTTGCAAAGT------ATCCTTACAATGAGAAA---GAATTGCCGC 393
consensus_7512#2 GTATGATGAAAACATTTGCAAAGT------ATCCTTACAATGAGAAA---GAATTGCCGC 268
consensus_7512#0 ATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGC 348
*** * * ** * * ** *** ** * ** * ***
consensus_7512#1 AAATAACAGTTATCCTATGGAAAAT-GTTCAAATCAGATGCATTTCGTTTCGTACAAG-A 451
consensus_7512#2 AAATAACAGTTATCCTATGGAAAAT-GTTCAAATCAGATGCATTTCGTTTCGTACAAG-A 326
consensus_7512#0 CGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTA 408
** * ** ***** * * *** * * ** * * * * ** *
consensus_7512#1 CGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAAC----GAGTTATG 507
consensus_7512#2 CGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAAC----GAGTTATG 382
consensus_7512#0 TTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATC 468
* * * ****** ** * *** ******* ** * ***
consensus_7512#1 ACAGTTCAAGTTCGTACAGGAC--AATCAGAGATTTGGAAAAAGAGCTACAAACATTGAC 565
consensus_7512#2 ACAGTTCAAGTTCGTACAGGAC--AATCAGAGATTTGGAAAAAGAGCTACAAACATTGAC 440
consensus_7512#0 GCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACAT-TCGAC 527
* * *** ** ** * *** * * ** * *** * * * ***
consensus_7512#1 GGCGCCTGATGG--ATTGATAAATGCCATGGGAAATT--TTGGAAATGGGTTATAACGAA 621
consensus_7512#2 GGCGCCTGATGG--ATTGATAAATGCCATGG-AAATT--TTGGAAATGGGTTATAACGAA 495
consensus_7512#0 GCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTAT 587
* * * ** *** ** * * *** *** * **** *
consensus_7512#1 ATGAAGGAAGCCCTGGACG-ATAATGGTGTAACCACGTGAGA------------------ 662
consensus_7512#2 ATGAAGGAAGCCCTGGACGCAAAGTATCCTCATCTAGCGGTAAATGGGATACTTTTGGCT 555
consensus_7512#0 CTGGATAATACCCAGAATG----ATTGGGACAACGTGCATTTAAATGGAGATTTAAAACA 643
** * * *** * * * * * * *
consensus_7512#1 ------------------------------------------------------------
consensus_7512#2 GAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCCTCTTTCATCAGTGNCTTCA 615
consensus_7512#0 AATACTTGCTATGTACTAACTAATATGATAATGTTCGTTTGTCGTCTACGATAAAATACA 703
consensus_7512#1 ----------------------
consensus_7512#2 TGTG------------------ 619
consensus_7512#0 TTTATGATGAAATACAAAAGTG 725
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||