These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 725 fasta sequence [CCGCGCATATGTCTAAGCAGATAAAAACAATTATTTGTGTTTTGCAAAACTCTTACGATTTACCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACATTCGACGCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTATCTGGATAATACCCAGAATGATTGGGACAACGTGCATTTAAATGGAGATTTAAAACAAATACTTGCTATGTACTAACTAATATGATAATGTTCGTTTGTCGTCTACGATAAAATACATTTATGATGAAATACAAAAGTG] [+] EMBL BM601028 [CCGCGCATATGTCTAAGCAGATAAAAACAATTATTTGTGTTTTGCAAAACTCTTACGATTTACCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGA ] [+] EMBL BM617075 [ ccgTTACGATTTACCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCGTCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACATTCGACGCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTATCTGGATAATACCCAGAATGATTGGGACAACGTGCATTTAAATGGAGATTTAAAACAAAT ] [+] EMBL BM626320 [ ccgCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACATTCGACGCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTATCTGGATAATACCCAGAATGATTGGGACAACGTGCATTTAAATGGAGATTTAAAACAAATACTTGCTATGTACTAACTAATATGATAATGTTCGTTTGTCGTCTACGATAAAATACATTTATGATG ] [+] EMBL BX617858 [ TTTGTAAAATTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGTCGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAACATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGCCGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTATTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATCGCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACATTCGACGCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTATCTGGATAATACCCAGAATGATTGGGACAACGTGCATTTAAATGGAGATTTAAAACAAATACTTGCTATGTACTAACTAATATGATAATGTTCGTTTGTCGTCTACGATAAAATACATTTATGATGAAATACAAAAGTG] consensusID : consensus_7512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 662 fasta sequence [CCGCCCACGCGTCCGGCCAAATCATGGCAAGCTCCATTTCAAGTGGTTTTCGTGAGGATTGTTCCGAATTTTTGTGTGATTTTGCAAAATTGAAAGCAACAGATTATCAAACATTTAGTCAAGAATGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAATGGCAGAATATTTAGGAGAAATCTTTTATACAGTGAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAACATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCATGGGAAATTTTGGAAATGGGTTATAACGAAATGAAGGAAGCCCTGGACGATAATGGTGTAACCAC-GTGAGA] [+] EMBL BM648656 [CCGCCCACGCGTCCGGCCAAATCATGGCAAGCTCCATTTCAAGTGGTTTTCGTGAGGATTGTTCCGAATTTTTGTGTGATTTTGCAAAATTGAAAGCAACAGATTATCAAACATTTAGTCAAGAATGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAATGGCAGAATATTTAGGAGAAATCTTTTATACAGTGAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAACATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCATGGGAAATTTTGGAAATGGGTTATAACGAAATGAAGGAAGCCCTGGACGATAATGGTGTAACCAC ] [+] EMBL AL697381 [ ccgagGTTAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAAGATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCAT GGAAATTTTGGAAATGGGTTATTACGAAATGAAGGAAGCCCTGGACGATAATGGTGTAA CACGGTGAGA] consensusID : consensus_7512#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [TGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAATGGNNGAATATTTAGGAGAAATCTTTTATACAGTGAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAACATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCATGGAAATTTTGGAAATGGGTTATAACGAAATGAAGGAAGCCCTGGACGCAAAGTATCCTCATCTAGCGGTAAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCCTCTTTCATCAGTGNCTTCATGTG] [+] EMBL BX619994 [TGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAATGGNNGAATATTTAGGAGAAATCTTTTATACAGTGAAAAGAATGTTTATCGCCTCAAATAATCCATTCGAACGAATAGGATCGTTTTACCTACTCTATACGTTGTATTTTAAACAGCCGTTATTTATGTTCAGCAAAATACGACTGACTTTGACAGAGTGGCGTATGATGAAAACATTTGCAAAGTATCCTTACAATGAGAAAGAATTGCCGCAAATAACAGTTATCCTATGGAAAATGTTCAAATCAGATGCATTTCGTTTCGTACAAGACGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAACGAGTTATGACAGTTCAAGTTCGTACAGGACAATCAGAGATTTGGAAAAAGAGCTACAAACATTGACGGCGCCTGATGGATTGATAAATGCCATGGAAATTTTGGAAATGGGTTATAACGAAATGAAGGAAGCCCTGGACGCAAAGTATCCTCATCTAGCGGTAAATGGGATACTTTTGGCTGAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCCTCTTTCATCAGTGNCTTCATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7512#1 CCGCCCACGCGTCCGGCCAAATCATGGCAAGCTCCATTTCAAGTGGTTTTCGTGAGGATT 60 consensus_7512#2 ------------------------------------------------------------ consensus_7512#0 ------------------------------------------------------------ consensus_7512#1 GTTCCGAATTTTTGTGTGATTTTGCAAAATTGAAAGCAACAGATTATCAAACATTTAGTC 120 consensus_7512#2 ------------------------------------------------------------ consensus_7512#0 ------------CCGCGCATATGTCTAAGCAGATAAAAACAATTATTTGTGTTTTGCAAA 48 consensus_7512#1 AAGAATGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAA 180 consensus_7512#2 -----TGGAAGAGAACCAATTTCCAGTATATTTTTTTCGGGCGGAATACCGATGCAGAAA 55 consensus_7512#0 ACTCTTACGATTTACCAAAAATGTCGGAAATAATGTTCGATCCCCGTGCGTTTTGTAAAA 108 * * * * ** * * * ** * **** * * * * *** consensus_7512#1 TGGCAGAATATTTAGGAGAAATCTTTTAT---ACAGTGAAAAGAATGTTTATCGCCTCAA 237 consensus_7512#2 TGGNNGAATATTTAGGAGAAATCTTTTAT---ACAGTGAAAAGAATGTTTATCGCCTCAA 112 consensus_7512#0 TTATGCTTCATGCAGCAAAGTATCCTCATCTAGCGGTGAATGGGATACTTTTGGCTGAAA 168 * ** ** * * * ** * ***** * ** ** * ** ** consensus_7512#1 ATAATCCATTCGA-ACGAATAGGATCGTTTTACCTACTCTATA-------CGTTGTATTT 289 consensus_7512#2 ATAATCCATTCGA-ACGAATAGGATCGTTTTACCTACTCTATA-------CGTTGTATTT 164 consensus_7512#0 ATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCTCTTTCATCAGTGCCTTCATGTGT 228 ** * * **** * * ** * ** * * * * * * * consensus_7512#1 TA-----AACAGCCGTTATTTATGTTCAG-CAAAATACGACTGACTTTGACAGAG-TGGC 342 consensus_7512#2 TA-----AACAGCCGTTATTTATGTTCAG-CAAAATACGACTGACTTTGACAGAG-TGGC 217 consensus_7512#0 CGCCCATGGCAGAGGTGGCTCTGGTTCAGGTAGAAGCCAAAGCATTGCAAAAGGGACAAC 288 *** ** * ****** * ** * * * * * ** * * consensus_7512#1 GTATGATGAAAACATTTGCAAAGT------ATCCTTACAATGAGAAA---GAATTGCCGC 393 consensus_7512#2 GTATGATGAAAACATTTGCAAAGT------ATCCTTACAATGAGAAA---GAATTGCCGC 268 consensus_7512#0 ATATCGTCGGTTATTATGTAGGCTGTGAAAATTTCTACGATAACCGTTTTGAGCGGGCGC 348 *** * * ** * * ** *** ** * ** * *** consensus_7512#1 AAATAACAGTTATCCTATGGAAAAT-GTTCAAATCAGATGCATTTCGTTTCGTACAAG-A 451 consensus_7512#2 AAATAACAGTTATCCTATGGAAAAT-GTTCAAATCAGATGCATTTCGTTTCGTACAAG-A 326 consensus_7512#0 CGGGAATACGAATTGCGGATAAAATAGCTGAAAGTTGTTCCAATGCTTGCATTGCAGTTA 408 ** * ** ***** * * *** * * ** * * * * ** * consensus_7512#1 CGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAAC----GAGTTATG 507 consensus_7512#2 CGAACTAGAACGTGGATTCGATCGATTTTATTTAAAAAGCTTTGGAAC----GAGTTATG 382 consensus_7512#0 TTGATAACTGTTCGATTTCGATTAATATGCGTTATCCAGCTTTGAAAATGTGGCAATATC 468 * * * ****** ** * *** ******* ** * *** consensus_7512#1 ACAGTTCAAGTTCGTACAGGAC--AATCAGAGATTTGGAAAAAGAGCTACAAACATTGAC 565 consensus_7512#2 ACAGTTCAAGTTCGTACAGGAC--AATCAGAGATTTGGAAAAAGAGCTACAAACATTGAC 440 consensus_7512#0 GCGATAATCGTTGGTCCAAAGCTAAATGTGTAGTCGAAAATGACAGCGTTACAT-TCGAC 527 * * *** ** ** * *** * * ** * *** * * * *** consensus_7512#1 GGCGCCTGATGG--ATTGATAAATGCCATGGGAAATT--TTGGAAATGGGTTATAACGAA 621 consensus_7512#2 GGCGCCTGATGG--ATTGATAAATGCCATGG-AAATT--TTGGAAATGGGTTATAACGAA 495 consensus_7512#0 GCTGTATCGTGTCTGTTGCAGCGTGGCGCTGCAAAGGAGTTGCACGATTACGATAATTAT 587 * * * ** *** ** * * *** *** * **** * consensus_7512#1 ATGAAGGAAGCCCTGGACG-ATAATGGTGTAACCACGTGAGA------------------ 662 consensus_7512#2 ATGAAGGAAGCCCTGGACGCAAAGTATCCTCATCTAGCGGTAAATGGGATACTTTTGGCT 555 consensus_7512#0 CTGGATAATACCCAGAATG----ATTGGGACAACGTGCATTTAAATGGAGATTTAAAACA 643 ** * * *** * * * * * * * consensus_7512#1 ------------------------------------------------------------ consensus_7512#2 GAAAATGGTAAAACAAGTACGATTGCGGACGCGGTGCCCCCTCTTTCATCAGTGNCTTCA 615 consensus_7512#0 AATACTTGCTATGTACTAACTAATATGATAATGTTCGTTTGTCGTCTACGATAAAATACA 703 consensus_7512#1 ---------------------- consensus_7512#2 TGTG------------------ 619 consensus_7512#0 TTTATGATGAAATACAAAAGTG 725 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||