These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1128 fasta sequence [GCAGAATCGCCACGAGGTNCAGAATAGCCCCCGCTTGATACGCGCGATTCTGTCTTTGTACGGCGTGTCATTTGGAGTTGTTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCA-CGTCACCGTCATTGGTGGCGGTGTGATGGGTTCC-GGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGC-GCCAGGTGGAGAAGGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAATTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCGTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCCAGCAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACCATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTGGTTCGACAGCCGCCCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGATGATGCGGCTGATCGAGGTGGTGCGCACGAAAGACACATCAGACGCGACGCACGAAGCGTTGCTGGCGTTTGGGAAAAGTTTGCGCAAAACGTGCATAACCTGCCGGGATGTGCCGGGCTTCGTCGTCAATCGGTTGCTGTTTCCGGTGATACACGAGGCGCTCGGGATGGTGGAGCGGGGCGATGCGACCCACCGGGACGTGGACGTGGCGATGAAGCTGGGGCTCGGCCATCCGATGGGCCCGTTCGAGCTGATGGACATTGTCGGGCTGGACACGGTGCGCTCGATACTGCACGAACGGCACGCGCGCAACCCGGCGGACGAGGGAACGCGGCCGAGCGAACTGCTCGAGCGGATGGTGGTGCGGGAGAAGAAGCTGGGGGTGAAGTCGGGCGAAGGGTTTTACAGCTACAAATAAAAGAGAGGCGGGTGGATGGGTGGTGGTGGGTTTACGTTTGACCTGTGTTTGATCATTCGAAGAAATATACTT] [+] EMBL BX468755 [GCAGAATCGCCACGAGGTNCAGAATAGCCCCCGCTTGATACGCGCGATTCTGTCTTTGTACGGCGTGTCATTTGGAGTTGTTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCAGCGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCAGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGGCCAGGTGGAGAAa ] [+] EMBL CNS08IWG [ CCCCTTGATACGCGCGATTCTGTCTTTGTACGGCGGGTCATTTGGAGTTGTTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCA CGTCACCGTCATTGGTGGCGGTGTGATGGGTTCC GGCATTGCGATGATAACAGCCGCCAACGGGTA CGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGC GCCAGGTGGAGAAGGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAATTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCGTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCCAGCAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACCATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTGGTTCGACAGCCGCCCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGATGATGCGGCTGATCGAGGTGGTGCGCACGAAAGACACATCAGACGCGACGCACGAAGCGTTGCTGGCGTTTGGGAAAAGTTTGCGCAAAACGTGCATAACCTGCCGGGATGTGCCGGGCTTCGTCGTCAATCGGTTGCTGTTTCCGGTGATACACGAGGCGCTCGGGATGGTGGAGCGGGGCGATGCGACCCACCGGGACGTGGACGTGGCGATGAAGCTGGGGCTCGGCCATCCGATGGGCCCGTTCGAGCTGATGGACATTGTCGGGCTGGACACGGTGCGCTCGATACTGCACGAACGGCACGCGCGCAACCCGGCGGACGAGGGAACGCGGCCGAGCGAACTGCTC ] [-] EMBL CNS08IWH [ TATTAAGCA CGTCACCGTCATTGGTGGCGGTGTGATGGGTTCC GGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGC GCCAGGTGGAGAAGGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAATTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCGTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCCAGCAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACCATTCTCACCAGCAACACCTCTTGGCTGTCGATCGGCGAGATTGGTTCAACAGCCGCCCGCAAAGATCGCATCGGTGGGCTAAACTTCTTCAACCCCGTGCCGATGATGCGGCTGATCGAGGTGGTGCGCACGAAAGACACATCAGACGCAACGCACGAAGCGTTGCTGGCGTTTGGGAAAAGTTTGCGCAAAACGTGCATAACCTGCCGGGATGTGCCGGGCTTCGTCGTCAATCGGTTGCTGTTTCCGGTAATACACGAGGCGCTCGGGATGGTGGAGCGGGGCGATGCGACCCACCGGGACGTGGACGTGGCGATGAAGCTGGGGCTCGGCCATCCGATGGGCCCGTTCGAGCTGATGGACATTGTCGGGCTGGACACGGTGCGCTCGATACTGCACGAACGGCACGCGCGCAACCCGGCGGACGAGGGAACGCGGCCGAGCGAACTGCTCGAGCGGATGGTGGTGCGGGAGAAGAAGCTGGGGGTGAAGTCGGGCGAAGGGTTTTACAGCTACAAATAAAAGAGAGGCGGGTGGATGGGTGGTGGTGGGTTTACGTTTGACCTGTGTTTGATCATTCGAAGAAATATACTT] consensusID : consensus_7520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 656 fasta sequence [CCCCGAGGTTAACGGCTGCGAGTACGGGCAGCC-TTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCG-ATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCGAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACAATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCG-CCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGCATGATGCGGCTGATCGAGGTGGTGCGCACAAGGGACACATCAGACGGGACGCACGAAGCGTTGCTGGCCGTCGGGAAAAGTTTGCGCAAAACGTGCATCACCTG] [+] EMBL AL929887 [CCCCGAGGTTAACGGCTGCGAGTACGGGCAGCC TTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCG ATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAANACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCGAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACAATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCG CCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGCATGATGCGGCTGATCGAGGTGGTGCGCACAAGGGACACATCAGACGGGACGCACGAAGCGTTGCTGGCCGTCGGGAAAAGTTTGCGCAAAACGTGCATCACCTG] [+] EMBL BX603213 [ aacCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCG ATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCGAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACAATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCG CCcg ] [+] EMBL BX627626 [ AAGTGCTAAATTCTTGTGTGCGTATGGCAGCGGCAACGGTGAATATTNAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCNAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCNCACAATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCGCCCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCG ATGATGCGGCTGATCGAGGTGG ] consensusID : consensus_7520#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [CAGAATTCGGCACGAGGTGTNTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTCCCGGCAATTTGCGATAATTAACAGCCGGCCAACGGGTACCGGGGTGAACCGGTGGTTCGAAGGTTGAAGCGAANGGATTGCGGGCCGGGACGTTCCGAANGGCGGCCCAAGGTTGGAGAAAAGAATCTTGCGCCCGGAATTGGGGCCCAAACCAACGGTTCNAGCAAGGGGCCAACCGNAGGCAAGCGGAAGGGGTTAAAGGTTTCTTTCAACCGGACAACCGGCCGGCCCCGGCTTTTGGGCGGTTACAGCTTTGCAAGCTTAGAAGGGAAGGGTTCTGTTGCCGGGGCACCCGGAT] [+] EMBL BX468675 [CAGAATTCGGCACGAGGTGTNTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTCCCGGCAATTTGCGATAATTAACAGCCGGCCAACGGGTACCGGGGTGAACCGGTGGTTCGAAGGTTGAAGCGAANGGATTGCGGGCCGGGACGTTCCGAANGGCGGCCCAAGGTTGGAGAAAAGAATCTTGCGCCCGGAATTGGGGCCCAAACCAACGGTTCNAGCAAGGGGCCAACCGNAGGCAAGCGGAAGGGGTTAAAGGTTTCTTTCAACCGGACAACCGGCCGGCCCCGGCTTTTGGGCGGTTACAGCTTTGCAAGCTTAGAAGGGAAGGGTTCTGTTGCCGGGGCACCCGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7520#0 GCAGAATCGCCACGAGGTNCAGAATAGCCCCCGCTTGATACGCGCGATTCTGTCTTTGTA 60 consensus_7520#1 ------------------------------------------------------------ consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 CGGCGTGTCATTTGGAGTTGTTGTGCGCGAAGA-ACCGGCTGCGAGTACGGGCAGCCTTT 119 consensus_7520#1 ------------------------CCCCGAGGTTAACGGCTGCGAGTACGGGCAGCCTTT 36 consensus_7520#2 CAGAATTCGGCACGAGGTGTNTGTGCGCGAAGA-ACCGGCTGCGAGTACGGGCAGCCTTT 59 * *** * * ************************ consensus_7520#0 TTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAAC 179 consensus_7520#1 T-CGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAAC 95 consensus_7520#2 TTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAAC 119 * ********************************************************** consensus_7520#0 GGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCA--TTGCG 237 consensus_7520#1 GGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCA--TTGCG 153 consensus_7520#2 GGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTCCCGGCAATTTGCG 179 ********************************************** ****** ***** consensus_7520#0 ATGAT-AACAGCCG-CCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGG 295 consensus_7520#1 ATGAT-AACAGCCG-CCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGG 211 consensus_7520#2 ATAATTAACAGCCGGCCAACGGGTACCGGG-----GTGAACCGGTGGTTCGAAGGTTGAA 234 ** ** ******** *************** *** * * * *** * * consensus_7520#0 CCGGACGTGCGAGGCGCCAGGTGGAGAAGGATCTGCGCCGGATGGCCCAACACGTCAGCA 355 consensus_7520#1 CCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAACACGTCAGCA 271 consensus_7520#2 GCGAANGGATTGCGGGCCGGGACG--------TTCCGAANGGCGGCCCAAGGT-TGGAGA 285 ** * * * *** ** * * ** * ******* * * consensus_7520#0 AGGGCAACGAGCAGGCGGAGGGTAAATTCTTCACCGACACCGCCGCCCGCTTGGCGTACA 415 consensus_7520#1 AGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACA 331 consensus_7520#2 AAAGAATCTTGCGCCCGGAAT-TGGGGCCCAAACCAACGGTTCNAGCAAGG-GGCCAACC 343 * * * * ** **** * * *** ** * * *** ** consensus_7520#0 GCGTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAA 475 consensus_7520#1 GCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAA 391 consensus_7520#2 GNAGGCAAGCGGAAGGGGTTAAAGGTTTCTTTCAACCGGACAACCGGCCGGCCCCGGC-- 401 * *** ** * *** * * * * * ** ** * ** consensus_7520#0 ATCTCCAGCAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACCA 535 consensus_7520#1 ATCTCGAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACAA 451 consensus_7520#2 -TTTTGGGCGGTTACA---GCTTTGCAAGCT--TAGAAGGGAAGGGTTCTGTTGCCGGGG 455 * * * ** *** * *** ** * ** *** * * * * consensus_7520#0 TTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTGGTTCGACAGCCGCCCGCA 595 consensus_7520#1 TTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCGCC-GCA 510 consensus_7520#2 CACCCGGAT--------------------------------------------------- 464 * * consensus_7520#0 AAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCG-ATGATGCGGCTGATCGAG 654 consensus_7520#1 AAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGCATGATGCGGCTGATCGAG 570 consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 GTGGTGCGCACGAAAGACACATCAGACGCGACGCACGAAGCGTTGCTGGCGTTTGGGAAA 714 consensus_7520#1 GTGGTGCGCACAAGGGACACATCAGACGGGACGCACGAAGCGTTGCTGGCCGTCGGGAAA 630 consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 AGTTTGCGCAAAACGTGCATAACCTGCCGGGATGTGCCGGGCTTCGTCGTCAATCGGTTG 774 consensus_7520#1 AGTTTGCGCAAAACGTGCATCACCTG---------------------------------- 656 consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 CTGTTTCCGGTGATACACGAGGCGCTCGGGATGGTGGAGCGGGGCGATGCGACCCACCGG 834 consensus_7520#1 ------------------------------------------------------------ consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 GACGTGGACGTGGCGATGAAGCTGGGGCTCGGCCATCCGATGGGCCCGTTCGAGCTGATG 894 consensus_7520#1 ------------------------------------------------------------ consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 GACATTGTCGGGCTGGACACGGTGCGCTCGATACTGCACGAACGGCACGCGCGCAACCCG 954 consensus_7520#1 ------------------------------------------------------------ consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 GCGGACGAGGGAACGCGGCCGAGCGAACTGCTCGAGCGGATGGTGGTGCGGGAGAAGAAG 1014 consensus_7520#1 ------------------------------------------------------------ consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 CTGGGGGTGAAGTCGGGCGAAGGGTTTTACAGCTACAAATAAAAGAGAGGCGGGTGGATG 1074 consensus_7520#1 ------------------------------------------------------------ consensus_7520#2 ------------------------------------------------------------ consensus_7520#0 GGTGGTGGTGGGTTTACGTTTGACCTGTGTTTGATCATTCGAAGAAATATACTT 1128 consensus_7520#1 ------------------------------------------------------ consensus_7520#2 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||