|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1466 fasta sequence
[CCTGGTGTACACGCTTTATGATAAGCTTCATCACTCGACGGCGCACTCGATGGCCAATTTGGTATTGGTGGTCTTGTTCACAAACTTCAGCTAGGATGCATTACGTGATCTAAGCGACCGACTACCTGTTAAACGCATGAAAGCATTCGGCTAAGTTTCCGAGTTTCTGAGCGTACAACGGAATAAGGGCTCCCGGAGCACAACAGCGGCACTGTGTCTATATTAACTTTACTTAATTATCATCATCATCATAGTCTCCGGGGTCGTCATATTGTAGGAAATCACCGTGACTTCTATCACTAGGCAGCGTTAAAATACCATTTAGAACTGCATATCCAAGCATTGCCACGGTGGCCACTAATCCTGACAGAATGTAACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGGTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGGCCGAGGATGATGAGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTAT-TAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAG-TTTAGGCAAGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTTCTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAA--TGCG-TTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCC-GGCCATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGCTGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCAGCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATATTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTATTTTACCCGCTTTACCAGTCTTTATTTTACCGTGCGGTTTACCGTCCTGCAGAAATGTGTGTTTACGCGTTGTGCAACCGGACGCGTGGGCGGACGCGTGGGCGG]
[+] EMBL CNS08QI2 [CCTGGTGTACACGCTTTATGATAAGCTTCATCACTCGACGGCGCACTCGATGGCCAATTTGGTATTGGTGGTCTTGTTCACAAACTTCAGCTAGGATGCATTACGTGATCTAAGCGACCGACTACCTGTTAAACGCATGAAAGCATTCGGCTAAGTTTCCGAGTTTCTGAGCGTACAACGGAATAAGGGCTCCCGGAGCACAACAGCGGCACTGTGTCTATATTAACTTTACTTAATTATCATCATCATCATAGTCTCCGGGGTCGTCATATTGTAGGAAATCACCGTGACTTCTATCACTAGGCAGCGTTAAAATACCATTTAGAACTGCATATCCAAGCATTGCCACGGTGGCCACTAATCCTGACAGAATGTAACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGGTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGGCCGAGGATGATGAGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTAT TAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAGTTTTCGGCCCGTTTTGGCGTTGTGTTGG ]
[+] EMBL CNS08Q14 [ TTTATGATAAGCTTCATCACTCGACGGCGCACTCGATGGCCAATTTGGTATTGGTGGTCTTGTTCACAAACTTCAGCTAGGATGCATTACGTGATCTAAGCGACCGACTACCTGTTAAACGCATGAAAGCATTCGGCTAAGTTTCCGAGTTTCTGAGCGTACAACGGAATAAGGGCTCCCGGAGCACAACAGCGGCACTGTGTCTATATTAACTTTACTTAATTATCATCATCATCATAGTCTCCGGGGTCGTCATATTGTAGGAAATCACCGTGACTTCTATCACTAGGCAGCGTTAAAATACCATTTAGAACTGCATATCCAAGCATTGCCACGGTGGCCACTAATCCTGACAGAATGTAACGCTTTCGCCTTTCCTTCGGACTATCGTCCGGGTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGGCCGAGGATGATGAGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTATATAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAG TTTAGGCAAGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTA ]
[-] EMBL CNS08QI1 [ GCCACCGCTGGCCGAGGATGATGAGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTAT TAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAG TTTAGGCAAGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTTCTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAAAGTGCG TTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCG ]
[-] EMBL CNS08Q13 [ CTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAG TTTAGGCAAGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTTCTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAAT TGCG TTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCCGGGCCATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGCTGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCAGCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATATTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTATTTTACCCGCTTTACCAGTCTTTATTTTACCGTGCGGTTTACCGTCCTGCAGAAAT ]
[-] EMBL BX620789 [ GCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCNTCCAGCNTCGCAGCTACCCAG TTTAGGCAGGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCAACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAA TGCGCTTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCC GGCCATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGCTGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCAGCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATATTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTAT ]
[-] EMBL BM627151 [ CAGCCTCGCAGCTACCCAG TTTAGGCAGGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCAACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAA TGCGCTTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCC GGCCATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGCTGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCAGCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATATTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTATTTTACCCGCTTTACCAGTCTTTATTTTACCGTGCGGTTTACCGTCCTGCAGAAATGTGTGTTTACGCGTTGTGCAACCGGACGCGTGGGCGGACGCGTGGGCGG]
consensusID : consensus_7521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[TCANTAGTCTANGCGTTTTTTAATACCATTTAGANCTGCATATCCANAGCATTCCATCGTTGCCACTAATCCTGACAGAATGTTACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGTTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGCCGAGGATGATGACGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTATTAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAANAAGCCGACAGATACGCGCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTGCCAGCCTCGCAGCTACCCAGTTTAGGCAAGTTTTGGCAGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAAAAGCCTGGGGGCAATCTG]
[-] EMBL AL697328 [TCANTAGTCTANGCGTTTTTTAATACCATTTAGANCTGCATATCCANAGCATTCCATCGTTGCCACTAATCCTGACAGAATGTTACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGTTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGCCGAGGATGATGACGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTATTAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAANAAGCCGACAGATACGCGCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTGCCAGCCTCGCAGCTACCCAGTTTAGGCAAGTTTTGGCAGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAAAAGCCTGGGGGCAATCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7521#0 CCTGGTGTACACGCTTTATGATAAGCTTCATCACTCGACGGCGCACTCGATGGCCAATTT 60
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 GGTATTGGTGGTCTTGTTCACAAACTTCAGCTAGGATGCATTACGTGATCTAAGCGACCG 120
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 ACTACCTGTTAAACGCATGAAAGCATTCGGCTAAGTTTCCGAGTTTCTGAGCGTACAACG 180
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 GAATAAGGGCTCCCGGAGCACAACAGCGGCACTGTGTCTATATTAACTTTACTTAATTAT 240
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 CATCATCATCATAGTCTCCGGGGTCGTCATATTGTAGGAAATCACCGTGACTTCTATCAC 300
consensus_7521#1 ----------------------------------------------------TCANTAGT 8
** *
consensus_7521#0 TAGGCAGCGTTAAAATACCATTTAGAACTGCATATCCAAGCATTGCCACGGTGGCCACTA 360
consensus_7521#1 CTANGCGTTTTTTAATACCATTTAGANCTGCATATCCANAGCATTCCATCGTTGCCACTA 68
* ** ************* *********** * *** ** *******
consensus_7521#0 ATCCTGACAGAATGTAACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGGTCTTGCTGCT 420
consensus_7521#1 ATCCTGACAGAATGTTACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGTTCTTGCTGCT 128
*************** ********************************* **********
consensus_7521#0 GACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGGCCG 480
consensus_7521#1 GACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTG-CCG 187
******************************************************** ***
consensus_7521#0 AGGATGATGA-GGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTG 539
consensus_7521#1 AGGATGATGACGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTG 247
********** *************************************************
consensus_7521#0 CCAGCATGTCCGGATGCGGTAAAACTATTAAAGCCTTCCTTCGCAAAGTATGTCGCCGTC 599
consensus_7521#1 CCAGCATGTCCGGATGCGGTAAAACTATTAAAGCCTTCCTTCGCAAAGTATGTCGCCGTC 307
************************************************************
consensus_7521#0 GTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTG 659
consensus_7521#1 GTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTG 367
************************************************************
consensus_7521#0 TTCGGTAGGGTAAGCTTAAGCAAAA--CCGACAGATACCCG--TACAGTAAAGCATCCAC 715
consensus_7521#1 TTCGGTAGGGTAAGCTTAAGCAANAAGCCGACAGATACGCGCGTACAGTAAAGCATCCAC 427
*********************** * *********** ** *****************
consensus_7521#0 TTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCT-CCAGCCTCGCAGCTACCCAGT 774
consensus_7521#1 TTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTGCCAGCCTCGCAGCTACCCAGT 487
************************************** *********************
consensus_7521#0 TTAGGCAAGTTTTGGC-GTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCC 833
consensus_7521#1 TTAGGCAAGTTTTGGCAGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCC 547
**************** *******************************************
consensus_7521#0 TCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTTCTGCGCAGCACGTACTTTCGC 893
consensus_7521#1 TCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGC 607
************************************** ********************
consensus_7521#0 GGGCAGTAGAAATTGAACGGAATTGGAATGCGTTCGCATACACCGTGCGCGTGGTGTCGA 953
consensus_7521#1 GGGCAGTAGAAATTGAACGGAA-----AAGCCTGGGGGCAATCTG--------------- 647
********************** * ** * * * * *
consensus_7521#0 CGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACAT 1013
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 ACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCG 1073
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 CCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCCGGC 1133
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 CATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGC 1193
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 TGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCA 1253
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 GCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATA 1313
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 TTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTATTTTACCCGCTT 1373
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 TACCAGTCTTTATTTTACCGTGCGGTTTACCGTCCTGCAGAAATGTGTGTTTACGCGTTG 1433
consensus_7521#1 ------------------------------------------------------------
consensus_7521#0 TGCAACCGGACGCGTGGGCGGACGCGTGGGCGG 1466
consensus_7521#1 ---------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||