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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1310 fasta sequence
[GCAGAATTCGGCACGNNTGGCAGTACAATCATGATCAGCCCGGAGTTCCGGCTGACCAAGAACAAGCTCTACCATGCGTACGCCGACTAAAGGGGCCCCCGAGGGGCAAACTTATCATTGCCCCCCCCCCCCCTCCGCCTCCCCCTCTTTTCCCCTTTACTTCTCCCACCCCACTTATTGCCTTCGAATCCCGTTTTTGTGTGTTGCAAGCGCAAATTGGGACAGGGCCAATACAACTGAACAAACCTACAACAACAATGTGTGTTTCTCATCACCACCCACCCCACCGTGTGTGTGTGTGTGTGCCCAACACAGCATCAACATCACACGAGCACACCCCACCCCCCCGTTTGGCGGACCGGTAGGCAGTAGCAGCGGCTGACCATTTTGTATTCCAAGAGGAGGAAGTAAAC-TACACGACCCACCCACCGGT----ACCCACCCCGCACCACCACCAAGAGCGCGCGCGCGCAGCCAGCAATTATCGAAGAAGAAAAAACAAGTGAAATAATGTGCATTTGTGTGTAATGTAAATGTGTGCAAAATTGTGCAACGAAGAAAAAGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAATTAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAATGATAAACAGATTTAAAACAAGAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACACATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTACACATTACGCCCATACACACATAGTAACACAACTCAACACGAGCACACATTGAAAACAGTCAAAAACACAAACACACACACACACACACACAGACAAACTATACACGCAACGTGTACCGATTCCTTAACTGACGAGGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTTGAAACAAGAAAACAAATCATTGATCTTAAGCTTAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGTGGTGTTCCCGGTTTTGTCTCTTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAAAACAGTAAAGGAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATAATT]
[+] EMBL BX467904 [GCAGAATTCGGCACGNNTGGCAGTACAATCATGATCAGCCCGGAGTTCCGGCTGACCAAGAACAAGCTCTACCATGCGTACGCCGACTAAAGGGGCCCCCGAGGGGC ]
[+] EMBL BM585764 [ ccggTGGCAGCACAATCATGATCAGCCCGGAGTTCCGGCTGACCAAGAACAAGCTCTACCATGCGTACGCCGACTAAAGGGGCCCCCGAGGGGCAAACTTATCATTGCCCCCCCCCCCCCTCCGCCTCCCCCTCTTTTCCCCTTTACTTCTCCCACCCCACTTATTGCCTTCGAATCCCGTTTTTGTGTGTTGCAAGCGCAAATTGGGACAGGGCCAATACAACTGAACAAACCTACAACAACAATGTGTGTTTCTCATCACCACCCACCCCACCGTGTGTGTGTGTGTGTGCCCAACACAGCATCAACATCACACGAGCACACCCCACCCCCCCGTTTGGCGGACCGGTAGGCAGTAGCAGCGGCTGACCATTTTGTATTCCAAGAGGAGGAAGTAAAC TACACGACCCACCCACCGGT ACCCACCCCGCACCACCA ]
[+] EMBL BM609366 [ ccGCGCAAATTGGGACAGGGCCAATACAACTGAACAAACCTACAACAACAATGTGTGTTTCTCATCACCACCCACCCCACCGTGTGTGTGTGTGTGTGCTCAACACAGCATCAACATCACACGAGCACACCCCACCCCCCCGTTTGGCGGACCGGTAGGCAGTAGCAGCGGCTGACCATTTTGTATTCCAAGAGGAGGAAGTAAACTTACACGACCCACCCACCGGTACCCACCCACCCCGCACCACCACCAAGAGCGCGCGCGCGCAGCCAGCAATTATCGAAGAAGAAAAAACAAGTGAAATAATGTGCATTTGTGTGTAATGTAAATGTGTGCAAAATTGTGCAACGAAGAAAAAGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAATTAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAATGATAAACAGATTTAAAACAAGAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACACATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGT ]
[+] EMBL BX626963 [ cnAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTACACATTACGCCCATACACACATAGTAACACAACTCAACACGAGCACACATTGAAAACAGTCAAAAACACAAACACACACACACACACACACAGACAAACTATACACGCAACGTGTACCGATTCCTTAACTGACGAGGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTTGAAACAAGAAAACAAATCATTGATCTTAAGCTTAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGTGGTGTTCCCGGTTTTGTCTCTTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAAAACAGTAAAGGAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATAATT]
consensusID : consensus_7533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[ATTGCCCNGAGGTTTACATGCCAAGTTCGAGAACCTGTGCATGTGATGAAGTCGGTGCTGGAGAGCAAGGTGGAGAAGNGTGATGGTGTCGAACCTGGCTGGTGGACTCGCCCTGCTGCATCTGTGACGTCGCAGTACTGGCTGGTCTGGCCAACATGGAGCTGCATCATGAATTGCTGCATGTGCTGCTGCTGTNACTCGTCGGCCATGGGCTACATTTGCTGGGCAAGAAGCATCTCGAGATCAACCCTGGACCATGCCATCATCGAGACTGCTGCTGCCAGCTGCTGCCGAGGCTGGACAAGAACTGATAAGTGCTGGTGAAGNGATCTGGTGATTCTTGCTGTTCTGAGACTGGTGCTGCTGTCCTCCGGCTTCTCGCTGGACTGAGCCCTGGAACCCATGCTGTCCCTGCATCTACCGCATGATCAAGCTGGGTCTGGGCATCGACGAGGACNGAGCCTGATGACTGACGTGACTGAGAGCAGCAGCGGTGCTTGCTGGCTGGCTGNGCCCCAGNCGTCGGGTGATGCTCCGCGCNTGGTGNACGACTCGCGAGGATCTGTCGCACATGGCAGGAGGTCGATTAAGGTGGTAACAGAAGCTTTAGTAAAGCTCTTTACAATTCGCTACACAACGTTAAGGAACGCCACCACACGCCAGTCT]
[+] EMBL AL930095 [ATTGCCCNGAGGTTTACATGCCAAGTTCGAGAACCTGTGCATGTGATGAAGTCGGTGCTGGAGAGCAAGGTGGAGAAGNGTGATGGTGTCGAACCTGGCTGGTGGACTCGCCCTGCTGCATCTGTGACGTCGCAGTACTGGCTGGTCTGGCCAACATGGAGCTGCATCATGAATTGCTGCATGTGCTGCTGCTGTNACTCGTCGGCCATGGGCTACATTTGCTGGGCAAGAAGCATCTCGAGATCAACCCTGGACCATGCCATCATCGAGACTGCTGCTGCCAGCTGCTGCCGAGGCTGGACAAGAACTGATAAGTGCTGGTGAAGNGATCTGGTGATTCTTGCTGTTCTGAGACTGGTGCTGCTGTCCTCCGGCTTCTCGCTGGACTGAGCCCTGGAACCCATGCTGTCCCTGCATCTACCGCATGATCAAGCTGGGTCTGGGCATCGACGAGGACNGAGCCTGATGACTGACGTGACTGAGAGCAGCAGCGGTGCTTGCTGGCTGGCTGNGCCCCAGNCGTCGGGTGATGCTCCGCGCNTGGTGNACGACTCGCGAGGATCTGTCGCACATGGCAGGAGGTCGATTAAGGTGGTAACAGAAGCTTTAGTAAAGCTCTTTACAATTCGCTACACAACGTTAAGGAACGCCACCACACGCCAGTCT]
consensusID : consensus_7533#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[CCGCGGACGCGTGGGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAATTAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAGTGATAAACAGATTTAAAACAAGAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACACATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTACACATTACGCCCATACACACATAGTAACACAACTCAACACGAGCACACGTTGGAAACAGTCAAAAACACAAACACACACACACACACACACAGACAAACTATACACGCAACG]
[+] EMBL BM605047 [CCGCGGACGCGTGGGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAATTAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAGTGATAAACAGATTTAAAACAAGAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACACATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTACACATTACGCCCATACACACATAGTAACACAACTCAACACGAGCACACGTTGGAAACAGTCAAAAACACAAACACACACACACACACACACAGACAAACTATACACGCAACG]
consensusID : consensus_7533#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence
[CATCATCTCCACAGCCACAGCCGCGCGCCGACCCACAACCGTCGGGTCCGACGTCTGCACGACCACGTTCACCGACGGCCCGATTGAAACGCGGGACGCGTACCGTCAGCGGGGGCGCGACCCAAACAAACACATC]
[+] EMBL BX614448 [CATCATCTCCACAGCCACAGCCGCGCGCCGACCCACAACCGTCGGGTCCGACGTCTGCACGACCACGTTCACCGACGGCCCGATTGAAACGCGGGACGCGTACCGTCAGCGGGGGCGCGACCCAAACAAACACATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7533#0 GCAGAATTCGGCACGNNTGGCAGTACAATCATGATCAGCCCGGAGTTCCGGCTGACCAAG 60
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 AACAAGCTCTACCATGCGTACGCCGACTAAAGGGGCCCCCGAGGGGCAAACTTATCATTG 120
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 CCCCCCCCCCCCCTCCGCCTCCCCCTCTTTTCCCCTTTACTTCTCCCACCCCACTTATTG 180
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 CCTTCGAATCCCGTTTTTGTGTGTTGCAAGCGCAAATTGGGACAGGGCCAATACAACTGA 240
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 ACAAACCTACAACAACAATGTGTGTTTCTCATCACCACCCACCCCACCGTGTGTGTGTGT 300
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 GTGTGCCCAACACAGCATCAACATCACACGAGCACACCCCACCCCCCCGTTTGGCGGACC 360
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 GGTAGGCAGTAGCAGCGGCTGACCATTTTGTATTCCAAGAGGAGGAAGTAAACTACACGA 420
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 CCCACCCACCGGTACCCACCCCGCACCACCACCAAGAGCGCGCGCGCGCAGCCAGCAATT 480
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 ATCGAAGAAGAAAAAACAAGTGAAATAATGTGCATTTGTGTGTAATGTAAATGTGTGCAA 540
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------ATTGCCCNGAGGTTTACATGCCAAGTTCGAGAACCTGTGCATGTGATG 48
consensus_7533#0 AATTGTGCAACGAAGAAAAAGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAAT 600
consensus_7533#2 ------CCGCGGACGCGTGGGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAAT 54
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 AAGTCGGTGCTGGAGAGCAAGGTGGAGAAGNGTGATGGTGTCGAACCTGGCTGGTGGACT 108
consensus_7533#0 TAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAATGATAAACAGATTTAAAACAA 660
consensus_7533#2 TAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAGTGATAAACAGATTTAAAACAA 114
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 CGCCCTGCTGCATCTGTGACGTCGCAGTACTGGCTGGTCTGGCCAACATGGAGCTGCATC 168
consensus_7533#0 GAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACA 720
consensus_7533#2 GAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACA 174
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ATGAATTGCTGCATGTGCTGCTGCTGTNACTCGTCGGCCATGGGCTACATTTGCTGGGCA 228
consensus_7533#0 CATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGT 780
consensus_7533#2 CATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGT 234
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 AGAAGCATCTCGAGATCAACCCTGGACCATGCCATCATCGAGACTGCTGCTGCCAGCTGC 288
consensus_7533#0 GGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTT 840
consensus_7533#2 GGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTT 294
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 TGCCGAGGCTGGACAAGAACTGATAAGTGCTGGTGAAGNGATCTGGTGATTCTTGCTGTT 348
consensus_7533#0 GTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTA 900
consensus_7533#2 GTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTA 354
consensus_7533#3 --------------CATCATCTCCACAGCCACAGCCGCGCGCCGACCCACAACCG--TCG 44
consensus_7533#1 CTGAGACTGGTGCTGCTGTCCTCCGGCTTCTC-GCTGGACTGAGCCCTGGAACCCATGCT 407
* * * * * ** *
consensus_7533#0 CACATTACGCCC---ATACACACATAGTAAC--ACAAC-TCAACACGAGCACACATTGAA 954
consensus_7533#2 CACATTACGCCC---ATACACACATAGTAAC--ACAAC-TCAACACGAGCACACGTTGGA 408
consensus_7533#3 GGTCCGACGTCT---GCACGACCACGTTCACCGACGGC-CCGATTGAAACGCGGGACGCG 100
consensus_7533#1 GTCCCTGCATCTACCGCATGATCAAGCTGGGTCTGGGCATCGACGAGGACNGAGCCTGAT 467
* * * ** * * * * * *
consensus_7533#0 AACAGTC-------AAAAACACAAACACACACACACACACACACAGACAAACTATACACG 1007
consensus_7533#2 AACAGTC-------AAAAACACAAACACACACACACACACACACAGACAAACTATACACG 461
consensus_7533#3 TACCGTC-------AGCGGGGGCGCGACCCAAACAAACACATC----------------- 136
consensus_7533#1 GACTGACGTGACTGAGAGCAGCAGCGGTGCTTGCTGGCTGGCTGNGCCCCAGNCGTCGGG 527
** * * * * * *
consensus_7533#0 CAACGTGTACCGATTCCTTAACTGACGAGGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTT 1067
consensus_7533#2 CAACG------------------------------------------------------- 466
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 TGATGCTCCGCGCNTGGTGNACGACTCGCGAGGATCTGTCGCACATGGCAGGAGGTCGAT 587
consensus_7533#0 GAAACAAGAAAACAAATCATTGATCTTAAGCTTAGCATTGAAAGGAAGATATTTTTTGAA 1127
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 TAAGGTGGTAACAGAAGCTTTAGTAAAGCTCTTTACAATTCGCTACACAACGTTAAGGAA 647
consensus_7533#0 AATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGT 1187
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 CGCCACCACACGCCAGTCT----------------------------------------- 666
consensus_7533#0 GGTGTTCCCGGTTTTGTCTCTTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAA 1247
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 AACAGTAAAGGAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATA 1307
consensus_7533#2 ------------------------------------------------------------
consensus_7533#3 ------------------------------------------------------------
consensus_7533#1 ------------------------------------------------------------
consensus_7533#0 ATT 1310
consensus_7533#2 ---
consensus_7533#3 ---
consensus_7533#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||