These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1790 fasta sequence [TTACACTCCTCCGCCCCAGCTGCAAGGGTCTCGCGGGCGCCAAGATGCCACGGAAGTTGCTGAAATTTCTCATCCTCTTCGACAACACGTCGCTGCTGTACTTCCCGGGCCAGTTTCTGTCCGGGCGGGTGCTGCTCGAGCTCCACGTCCTCCCACCGGTGCTGGGACTTCATTTCCATGTCGTTGGCGAGTGTGTCGTGCGCGTGCGCTCGACGCGCCACGAGCGATCGTACGATAAGGAAAACTATATCGACTTCCGGATGCGCCTGCTGGGCGATTCCGACAACCAAGGGCCCACAGCTTTTCGTTCAAGCTCGGCCTGCCCGTCGATCTGCCGTCGACCTTTCTCGGGCGGTACGGCTGGGTGCAGTACTTCTGCAAGGCCGGGCTGCGCGAACCGTCCGGCCTGATACACAAGAACCACCAGGTGTTCATCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGCGGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCATCGTGAAGTGTAAAATCATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGATCACGGCGACGGTTACGAATGCGAGCAGTGTGACGATCAAATCGACCAAAGCTGCACTTACAGAGACGATACAGTATTTTGCACGCGATAAGGTGATGCAGACGGAGAAACGAGAGCTGGCAGTGATAGCCCGGGGCAAGATACGGGCCGGTCACAGGGACGAATGGCAGAACGAGTCCCTTTACGTGCCACCGCTGCCACCGACCAATCTGCGCGGCTGTCATCTAATACGGATCCAGTACGACGTTTGTTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTACAGCTGCCGATTACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGCCGAAACAATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTGGTTACACGAGAAAAACGATCAAAAGTAACACACATCTGACGATCCCTGCGATGAGCATCCGAGCAGCCGGGTTTGGAGGATAGTTGGCTGGTAGAAACGTAAACCACAATTGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATA-TTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTGCCTTGTTTCAGCAGATTTACCAGCTCTTCATAGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGAAGACGGATCCTCAAAGTGGGTGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGTCTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAGCGAAAGGAATAAAATCAACGCGGAAGCCACAATGTCGATCCGCTTCGCCCAGCGGATCATGCGCCAACTCCGTTTGTGGCACCAGCGCTACCAATTTCGGACGCGTGGGCGG] [+] EMBL CNS08DDY [TTACACTCCTCCGCCCCAGCTGCAAGGGTCTCGCGGGCGCCAAGATGCCACGGAAGTTGCTGAAATTTCTCATCCTCTTCGACAACACGTCGCTGCTGTACTTCCCGGGCCAGTTTCTGTCCGGGCGGGTGCTGCTCGAGCTCCACGTCCTCCCACCGGTGCTGGGACTTCATTTCCATGTCGTTGGCGAGTGTGTCGTGCGCGTGCGCTCGACGCGCCACGAGCGATCGTACGATAAGGAAAACTATATCGACTTCCGGATGCGCCTGCTGGGCGATTCCGACAACCAAGGGCCCACAGCTTTTCGTTCAAGCTCGGCCTGCCCGTCGATCTGCCGTCGACCTTTCTCGGGCGGTACGGCTGGGTGCAGTACTTCTGCAAGGCCGGGCTGCGCGAACCGTCCGGCCTGATACACAAGAACCACCAGGTGTTCATCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGCGGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCATCGTGAAGTGTAAAATCATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGATCACGGCGACGGTTACGAATGCGAGCAGTGTGACGATCAAATCGACCAAAGCTGCACTTACAGAGACGATACAGTATTTTGCACGCGATAAGGTGATGCAGACGGAGAAACGAGAGCTGGCAGTGATAGCCCGGGGCAAGATACGGGCCGGTCACAGGGACGAATGGCAGAACGAGTCCCTTTACGTGCCACCGCTGCCACCGACCAATCTGCGCGGCTGTCATCTAATACGGATCCAGTACGACGTTTGTTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTACAGCTGCCGATTACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGCCGAAACAATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTGGTTACA ] [+] EMBL CNS08QXQ [ tTGCGCCTGCGGGGCGATTCCGACAACCAAGGGCCCACAGCTTCCCGTTCAAGCTCGGCCTGCCCGTCGATCTGCCGTCGACCTTTCTCGGGCGGTACGGCTGGGTGCAGTACTTCTGCAAGGCCGGGCTGCGCGAACCGTCCGGCCTGATACACAAGAACCACCAGGTGTTCATCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGCGGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCATCGTGAAGTGTAAAAACATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGATCACGGCGACGGTT ] [+] EMBL BX611163 [ TCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGCGGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCATCGTAAAGTGTAAAATCATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGATCACGGCGACGGTAACGAATGCGAGCAGTGTGACGATCAAATCGACCAAAGCTGCACTTACAGAGACGATACAGTATTTTGCACGCGATAAGGTAATGCAGACGGAGAAACGAGAGCTGGCAGTGATAGCCCGGGGCAAGATACGGGCCGGTCACAGGGACGAATGGCAGAACGAGTCCCTTTACGTGCCACCACTGCCACCGACCAATCTGCGCGGCTGTCATCTAATACGTATCCAGTACGACGTTTGTTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTCCAGCTGCCGATCACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGCCGAAACGATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTGGTTACACGAGAAAAACGATCAAAAGTAACACACATCTGACGATCCCTGCGATGAGCAT ] [-] EMBL BX612124 [ atttgcagTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTACAGCTGCCGATTACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGCCGAAACAATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTGGTTACACGAGAAAAACGATCAAAAGTAACACACATCTGACGATCCCTGCGATGAGCATCCGAGCAGCCGGGTTTGGAGGATAGTTGGCTGGTAGAAACGTAAACCACAATTGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATA TTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTGCCTTGTTTCAGCAGATTTACCAGCTCTTCATAGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAG ] [-] EMBL BM636838 [ TTTGTCAGTTGCGATATTTCCGCGCACGCCCTGTCTCTGCAGGTAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTGCCTTGTTTTAGCAGATTTACCAGCTCTTCATCATTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTACGACGTCGTTTCGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGATCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGAAGACGGATCCTCAAAGTGGGTGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGTCTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAGCGAAAGGAATAAAATCAACGCGGAAGCCACAATGTCGATCCGCTTCGCCCAGCGGATCATGCGCCAACTCCGTTTGTGGCACCAGCGCTACCAATTTCGGACGCGTGGGCGG] consensusID : consensus_7536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence [TTTTTGAAAG-AGCAATACAATTCATCTGAATAATTATTTTACCGTAAACCACAATTGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATATTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTTGTTTTGTTTCAGCAGATTTACCAGCTCTTCATCGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGACGACGGATCCTCAAAGTGGGTGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGTCTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAGCGAAAGGAATAAAATCAACGCGGAAGCCACCATGTCGATCCGCTTCGCCCAGCGGATCATGCGCCAATTCCGTTTGCGGCA] [+] EMBL CNS08ELZ [TTTTTGAAAG AGCAATACAATTCATCTGAATAATTATTTTACCGTAAACCACAATTGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATATTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTTGTTTTGTTTCAGCAGATTTACCAGCTCTTCATCGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGACGACGGATCCTCAAAGTGGGTGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGTCTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAGCGAAAGGAATAAAATCAACGCGGAAGCCACCATGTCGATCCGCTTCGCCCAGCGGATCATGCGCCAATTCCGTTTGCGGCA] [-] EMBL BM628650 [ GAAAGTTTCAATACAATTCATCTGAATAATTATTTTACCGTAAACCACAA TGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATATTCCGCGCACGCCCTGTCTCTGCAGGTAATCCTTCAGCACGGGTATGGTTAAACTGCCCAC TTTGCCTTGTTTCAGCAGATTTACCAGCTCTTCATCGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGcgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7536#0 TTACACTCCTCCGCCCCAGCTGCAAGGGTCTCGCGGGCGCCAAGATGCCACGGAAGTTGC 60 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 TGAAATTTCTCATCCTCTTCGACAACACGTCGCTGCTGTACTTCCCGGGCCAGTTTCTGT 120 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 CCGGGCGGGTGCTGCTCGAGCTCCACGTCCTCCCACCGGTGCTGGGACTTCATTTCCATG 180 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 TCGTTGGCGAGTGTGTCGTGCGCGTGCGCTCGACGCGCCACGAGCGATCGTACGATAAGG 240 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 AAAACTATATCGACTTCCGGATGCGCCTGCTGGGCGATTCCGACAACCAAGGGCCCACAG 300 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 CTTTTCGTTCAAGCTCGGCCTGCCCGTCGATCTGCCGTCGACCTTTCTCGGGCGGTACGG 360 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 CTGGGTGCAGTACTTCTGCAAGGCCGGGCTGCGCGAACCGTCCGGCCTGATACACAAGAA 420 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 CCACCAGGTGTTCATCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGC 480 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 GGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCAT 540 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 CGTGAAGTGTAAAATCATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGAT 600 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 CACGGCGACGGTTACGAATGCGAGCAGTGTGACGATCAAATCGACCAAAGCTGCACTTAC 660 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 AGAGACGATACAGTATTTTGCACGCGATAAGGTGATGCAGACGGAGAAACGAGAGCTGGC 720 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 AGTGATAGCCCGGGGCAAGATACGGGCCGGTCACAGGGACGAATGGCAGAACGAGTCCCT 780 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 TTACGTGCCACCGCTGCCACCGACCAATCTGCGCGGCTGTCATCTAATACGGATCCAGTA 840 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 CGACGTTTGTTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTACAGCTGCC 900 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 GATTACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGC 960 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 CGAAACAATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTG 1020 consensus_7536#1 ------------------------------------------------------------ consensus_7536#0 GTTACACGAGAAAAACGATCAAAAGTAACACACATCTGACGATCCCTGCGATGAGCATCC 1080 consensus_7536#1 ---------------------------------------------------TTTTTGAAA 9 * consensus_7536#0 GAGCAGCCGGGTTTGGA-GGATAGTTGGCTGGTAGAAACGTAAACCACAATTGGTAGCTT 1139 consensus_7536#1 GAGCAATACAATTCATCTGAATAATTATTTTAC-----CGTAAACCACAATTGGTAGCTT 64 ***** ** * *** ** * ********************** consensus_7536#0 AAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTG 1199 consensus_7536#1 AAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTG 124 ************************************************************ consensus_7536#0 CGATATTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACT 1259 consensus_7536#1 CGATATTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACT 184 ************************************************************ consensus_7536#0 GCCCACTTT-GCCTTGTTTCAGCAGATTTACCAGCTCTTCATAGTTGACCGGTGCGACCC 1318 consensus_7536#1 GCCCACTTTTGTTTTGTTTCAGCAGATTTACCAGCTCTTCATCGTTGACCGGTGCGACCC 244 ********* * ***************************** ***************** consensus_7536#0 TCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAG 1378 consensus_7536#1 TCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAG 304 ************************************************************ consensus_7536#0 GTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCT 1438 consensus_7536#1 GTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCT 364 ************************************************************ consensus_7536#0 TGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGT 1498 consensus_7536#1 TGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGT 424 ************************************************************ consensus_7536#0 CGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGAAGACGGATCCTCAAAGTGGG 1558 consensus_7536#1 CGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGACGACGGATCCTCAAAGTGGG 484 **************************************** ******************* consensus_7536#0 TGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGT 1618 consensus_7536#1 TGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGT 544 ************************************************************ consensus_7536#0 CTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAG 1678 consensus_7536#1 CTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAG 604 ************************************************************ consensus_7536#0 CGAAAGGAATAAAATCAACGCGGAAGCCACAATGTCGATCCGCTTCGCCCAGCGGATCAT 1738 consensus_7536#1 CGAAAGGAATAAAATCAACGCGGAAGCCACCATGTCGATCCGCTTCGCCCAGCGGATCAT 664 ****************************** ***************************** consensus_7536#0 GCGCCAACTCCGTTTGTGGCACCAGCGCTACCAATTTCGGACGCGTGGGCGG 1790 consensus_7536#1 GCGCCAATTCCGTTTGCGGCA------------------------------- 685 ******* ******** **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||