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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1388 fasta sequence
[CCAATCGGGTCCCGCGGTACGGACGTTCAGCGCTTCAGGCGAGTGAAGCAGATTTCTAGACTAACTCCGATAGTCAACCATATCCACTTGTGGGCAAGCGTTAGTATCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCATCAGGTTGGTGCCGGGCTGTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTGTAACAAAACTAAACATGCAGACAGCACAGGTCGCAATACTAATATAATTAATAATCGTAAGAACGTTTAGCGTTTGTATAGTGTATAGTGAGTTTGTGAATAGAGAGGGTTTGTAAGCAGCCGCCGTACGATTAGCGACGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCTAGCGAGAATTGGGGGAACACAAACAAACAAGAAACTACGAAATCAAAAATCCCAGAAGCAGATGAAGTATTAGCAAAACACGGAGTGCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTTCCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGC-TTTTGAGACGCACAGCTAAAAACAAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCGACGTTGCTGCTCGGAAACGCAGCGCAGACGACCGAACGCGATGGGCACAAAAAAAAAAAAAAACAGGACAAATACGTGCGCGTGTAGGCAGGTGCGTAGCAGAAGAAGCTACATGCAGACAGGTGAATCCGTGTGGGGGGTGGGTGGGTGTGCTGAGAACAACCCAAGTAGTGTTAGCCTTTTTATACAGCATAGAGTTACGAACAACCCAGCGTGGCTAGAGGAAAGTCTATTGTAATCCCCTTTCATGCGCGCTGGGACCGATTGTTATTTCATCGAGAAACTGTAGCGAACACACAGGGTGGGGATGAAAGGCTGAGACAAGCAGTACA]
[+] EMBL AL692456 [CCAATCGGGTCCCGCGGTACGGACGTTCAGCGCTTCAGGCGAGTGAAGCAGATTTCTAGACTAACTCCGATAGTCAACCATATCCACTTGTGGGCAAGCGTTAGTATCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCAT ]
[+] EMBL BX603876 [ TCCACTTGTGGGCAAGCGTTAGTATCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCATCAGGTTGGTGCCGGGCTGTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTGTAACAAAACTAAACATGCAGACAGCACAGGTCGCAATACTAATATAATTAATAATCGTAAGAACGTTTAGCGTTTGTATAGTGTATAGTGAGTTTGTGAATAGAGAGGGTTTGTAAGCAGCCGCCGTACGATTAGCGACGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCTAGCGAGAATTGGGGGAACACAAACAAACAAGAAACTACGAAATCAAAAATCCCAGAAGCAGATGAAGTATTAGCAAAACACGGAGTGCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCG ]
[+] EMBL BX623668 [ GTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTGTAACAAAACTAAACATGCAGACAGCACAGGTCGCAATACTAATATAATTAATAATCGTAAGAACGTTTAGCGTTTGTATAGTGTATAGTGAGTTTGTGAATAGAGAGGGTTTGTAAGCAGCCGCCGTACGATTAGCGACGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCTAGCGAGAATTGGGGGAACACAAACAAACAAGAAACTACGAAATCAAAAATCCCAGAAGCAGATGAAGTATTAGCAAAACACGGAGTGCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTTCCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGCTTTTTGAGACGCACAGCT AAAACNAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCGACGTT ]
[+] EMBL BX618881 [ TTAGCAAAACACGGAGTGCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCTCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTTCCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGC TTTTGAGACGCACAGCTAAAAACAAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCG ]
[+] EMBL BX608062 [ AGGTCCGTCAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTTCCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGC TTTTGAGACGCACAGCTAAAAACAAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCGACGTTGCTGCTCGGAAACGCAGCGCAGACGACCGAACGCGATGGGCACAAAAAAAAAAAAAAACAGGACAAATACGTGCGCGTGTAGGCAGGTGCGTAGCAGAAGAAGCTACATGCAGACAGGTGAATCCGTGTGGGGGGTGGGTGGGTGTGCTGAGAACAACCCAAGTAGTGTTAGCCTTTTTATACAGCATAGAGTTACGAACAACCCAGCGTGGCTAGAGGAAAGTCTATTGTAATCCCCTTTCATGCGCGCTGGGACCGATTGTTATTTCATCGAGAAACTGTAGCGAACACACAGGGTGGGGATGAAAGGCTGAGACAAGCAGTACA]
consensusID : consensus_7539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CAGGCAGAATCGCCGCGGTAATATACAGTGTACTAGATGAGTTTGCCTGANTACGAGAGGGTTTGTAATCGCAAAGCGCCGTACGATTAGCGANGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCCTAGCGACGAATCTTGGGGGAACAACAAAAAACAAGAAACTACGCAANTCAAAAATCCCAGAAGCACGATGAACGTATTAGCAAAACCACGGAGTGCTTGTGGGAGCGTTCNAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGACGAGTGTCGATCTTCGNTTTCCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGATCGCCATGTGCCATCCGACANCAAGTAGGACGGAATAATAGGGTAGCTGTAGCCCCAAAAGTATGCACCCCGGAGAACCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGNNTTTATACTTNGTTTGCTACACGTCAGGTAAAGAGAAGAGATGATATGGTATTCTGATGCGTTGTGCCTAAAATATGAAAGCAGTTCTGCTTGCTGCTATATTTCCCCTTCCAAACGGCAGGATGGGTGAAGGATGTACACGATTCAGCACTGANTTGCTTATGAGACGCACCAGCTAAAAACAAAAACCAGGGAACAATATATGGAAGCATCGCAGGCA]
[+] EMBL AL696673 [CAGGCAGAATCGCCGCGGTAATATACAGTGTACTAGATGAGTTTGCCTGANTACGAGAGGGTTTGTAATCGCAAAGCGCCGTACGATTAGCGANGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCCTAGCGACGAATCTTGGGGGAACAACAAAAAACAAGAAACTACGCAANTCAAAAATCCCAGAAGCACGATGAACGTATTAGCAAAACCACGGAGTGCTTGTGGGAGCGTTCNAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGACGAGTGTCGATCTTCGNTTTCCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGATCGCCATGTGCCATCCGACANCAAGTAGGACGGAATAATAGGGTAGCTGTAGCCCCAAAAGTATGCACCCCGGAGAACCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGNNTTTATACTTNGTTTGCTACACGTCAGGTAAAGAGAAGAGATGATATGGTATTCTGATGCGTTGTGCCTAAAATATGAAAGCAGTTCTGCTTGCTGCTATATTTCCCCTTCCAAACGGCAGGATGGGTGAAGGATGTACACGATTCAGCACTGANTTGCTTATGAGACGCACCAGCTAAAAACAAAAACCAGGGAACAATATATGGAAGCATCGCAGGCA]
consensusID : consensus_7539#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[TCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCATCAGGTTGGTGCCGGGCTGTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTTAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATG]
[+] EMBL BX617773 [TCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCATCAGGTTGGTGCCGGGCTGTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTTAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7539#0 CCAATCGGGTCCCGCGGTACGGACGTTCAGCGCTTCAGGCGAGTGAAGCAGATTTCTAGA 60
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 CTAACTCCGATAGTCAACCATATCCACTTGTGGGCAAGCGTTAGTATCTGTTTCTGTTTT 120
consensus_7539#2 ----------------------------------------------TCTGTTTCTGTTTT 14
consensus_7539#1 --------------------------------------CAGGCAGAATCGCCGCGGTAAT 22
* * ** *
consensus_7539#0 GGCCGAT-TGC-AAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAAC 178
consensus_7539#2 GGCCGAT-TGC-AAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAAC 72
consensus_7539#1 ATACAGTGTACTAGATGAGTTTGCCTGANTACGAGAGGGTTTGTAATCGCAAAGCGCCGT 82
* * * * * * * * ** * ** * * * * ****
consensus_7539#0 ATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACAT 238
consensus_7539#2 ATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACAT 132
consensus_7539#1 ACGATTAGCGANGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCCTAGCGACGA-AT 141
* * * ** * * *** ** * * * ***** ** * * * **
consensus_7539#0 TACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCG-CATCAGGTTGGTGCCGG 297
consensus_7539#2 TACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCG-CATCAGGTTGGTGCCGG 191
consensus_7539#1 CTTGGGGGAACAACAAAAAACAAGAAACTACGCAANTCAAAAATCCCAGAAGCACGATGA 201
* ** * ** * **** *** *** * *** * *
consensus_7539#0 GCTGTGCTAAGAGAGGCGCCAGGC-CAGGCGACAGCGTGTAACAAAACTAAACATGCAGA 356
consensus_7539#2 GCTGTGCTAAGAGAGGCGCCAGGC-CAGGCGACAGCGT---------------------- 228
consensus_7539#1 AC-GTATTAGCAAAACCACGGAGTGCTTGTGGGAGCGT---------------------- 238
* ** ** * * * * * * * * *****
consensus_7539#0 CAGCACAGGTCGCAATACTAATATAATTAATAATCGTAAGAACGTTTAGCGTTTGTATAG 416
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 TGTATAGTGAGTTTGTGAATAGAGAGGGTTTGTAAGCAGCCGCCGTACGATTAGCGACGA 476
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 ATTCGGAAACTGTTTATCATGTCATGTGTGCGCTAGCGAGAATTGGGGGAACACAAACAA 536
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 ACAAGAAACTACGAAATCAAAAATCCCAGAAGCAGATGAAGTATTAGCAAAACACGGAGT 596
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 GCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGA-GA 655
consensus_7539#2 -------------TAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGA-GA 274
consensus_7539#1 ------------TCNAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGACGA 286
****************************************** **
consensus_7539#0 GTGTAGAT-TTCGTTT--CGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCT 712
consensus_7539#2 GTGTAGAT-TTCGTTT--CGTGTATGACATTATTCAAACCAGGTCCGTTAGGCACCATCT 331
consensus_7539#1 GTGTCGATCTTCGNTTTCCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCT 346
**** *** **** ** ****************************** ***********
consensus_7539#0 TCCGTCGG-TCGC-ATGTGCCATCCG-CAGCAAGTAGGACGGAATAATAGGGTAG-TGTA 768
consensus_7539#2 TCCGTCGG-TCGC-ATGTGCCATCCG-CAGCAAGTAGGACGGAATAATAGGGTAG-TGTA 387
consensus_7539#1 TCCGTCGGATCGCCATGTGCCATCCGACANCAAGTAGGACGGAATAATAGGGTAGCTGTA 406
******** **** ************ ** ************************* ****
consensus_7539#0 GCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGC 828
consensus_7539#2 GCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGC 447
consensus_7539#1 GCCCCAAAAGTATGCACCCCGGAGAACCCACACTGAATGTAACGTTGTCTATTTCACTGC 466
************************* **********************************
consensus_7539#0 TTCGTTACCCTCTTCTTCTGTTGCTTT-ATACTTT-TTTGCTA-ACGTTTGGTAAAGAGA 885
consensus_7539#2 TTCGTTACCCTCTTCTTCTGTTGCTTT-ATACTTT-TTTGCTA-ACGTTTGGTAAAGAGA 504
consensus_7539#1 TTCGTTACCCTCTTCTTCTGTTGNNTTTATACTTNGTTTGCTACACGTCAGGTAAAGAGA 526
*********************** ** ****** ******* **** **********
consensus_7539#0 AGAGATGAT-TGGT--TTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTT 942
consensus_7539#2 AGAGATGAT-TGGT--TTTGATG------------------------------------- 524
consensus_7539#1 AGAGATGATATGGTATTCTGATGCGTTGTGCCTAAAATATGAAAGCAGTTCTGCTTGCTG 586
********* **** * *****
consensus_7539#0 CCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGCTTTTGAGACGC 1002
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 CTATATTTCCCCTTCCAAACGGCAGGATGGGTGAAGGATGTACACGATTCAGCACTGANT 646
consensus_7539#0 ACAGCTAAAAACAAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCGACGTTG 1062
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 TGCTTATGAGACGCACCAGCTAAAAACAAAAACCAGGGAACAATATATGGAAGCATCGCA 706
consensus_7539#0 CTGCTCGGAAACGCAGCGCAGACGACCGAACGCGATGGGCACAAAAAAAAAAAAAAACAG 1122
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 GGCA-------------------------------------------------------- 710
consensus_7539#0 GACAAATACGTGCGCGTGTAGGCAGGTGCGTAGCAGAAGAAGCTACATGCAGACAGGTGA 1182
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 ATCCGTGTGGGGGGTGGGTGGGTGTGCTGAGAACAACCCAAGTAGTGTTAGCCTTTTTAT 1242
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 ACAGCATAGAGTTACGAACAACCCAGCGTGGCTAGAGGAAAGTCTATTGTAATCCCCTTT 1302
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 CATGCGCGCTGGGACCGATTGTTATTTCATCGAGAAACTGTAGCGAACACACAGGGTGGG 1362
consensus_7539#2 ------------------------------------------------------------
consensus_7539#1 ------------------------------------------------------------
consensus_7539#0 GATGAAAGGCTGAGACAAGCAGTACA 1388
consensus_7539#2 --------------------------
consensus_7539#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||