These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1582 fasta sequence [TGAAAATGTAATTTAATTTATTTGTTTGTTCTAAGCTTTTCTTTACAGCTGCTCTTATCCA----CCTCCCCCCCGGGG---TAGATTGATAAAGCTGTTTCATTTTAATACTCCAGCGTAATTCGTGCCTCCTTTCCGTCCACGAGCACACGAATGCCGTGCTTCAGACAGAACTCTCGCTTGATGTACCCAAAGAAGAGATCGGTTATTAAGAAAATCTGCGCGGTGCAGAAAATCAACGTCACGCCAAAGTAAAAGTTGGCGTTGGCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGCGCAAGCACGCTCGTGACCAGCATTGTCGCACCGACGATAAAATTGTTCTTCATGAACATAGAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGTCTCCGATGCAAGGATACGAGCGAAAGACGGCCCCCAGACCGATCAGCATCGTCGCAAGCATGATCGGTTCCTTGTGCAGCTTGAACGTGAGCGGAAACAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACAGCGTCCGGAAGTGATCGAACATCTCGGTGAAGAAATACCAAAACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCATCCATCAGAAAGCTGCCGAAGTAATTAACTCCTAAAAATAGCGCCACAAACAACGCACTGCTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCCGGTTGGCAATGTGTAGGGCGCCCGGGGC-GA-GCAGAACAA-ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGGTAGGCGAACCCCACGGACATCGGCACCGTGTGCATGTCCGTCTCGACTAGATGTAGCTCCTCCGTGTCCTTTGCGTAGCTATCCTTTTCTTTTCGTTGTTTTTCGTACATTTCGCGGATGAATACACGCGCTGCCAGCAGGAGAAGGATGCCGGTCGCTACGTCTAGCAGGATGAACAGGGACGGTATGGCACTGGGGACGTTATCGAGCAGCCAGCGGGAGGCATGCAGTATGAGCGGGTTTTTGTGGTACACGTCGCCATCGTACGGATTTACTCCGTTCGCGTACAGATAGGCACCTTCCTCGACCCTCTTCCACGAGTTGATGGGTGTGGACACCTCCACCCGGTTCTGTATCCCGTGGGAATAGCGGGAGTTCATAAGCAGGAACCGCACGGCCGCGGCCACTCCTACACTTATTGCTAGTTTCA-TTTTTACCTTAT-GCCCTTGGTCCGAGTTCAGCTCCAACGAGACAGTTCCAGCGCTCTGTGATGTATTGTTTAACATGTAAACCTAATGTTCAAGCTCGCAATTCACAATTCCAGCCTCGCAATAGTCACATATCAATCCACATTCTCGTCAATTTTGGATACAAGCCCGGT] [-] EMBL BX619034 [TGAAAATGTAATTTAATTTATTTGTTTGTTCTAAGCTTTTCTTTACAGCTGCTCTTATCCACCCGCCTCCCCCCCGGGGAGCTAGATTGATAAAGCTGTTTCATTTTAATACTCCAGCGTAATTCGTGCCTCCTTTCCGTCCACGAGCACACGAATGCCGTGCTTCAGACAGAACTCTCGCTTGATGTACCCAAAGAAGAGATCGGTTATTAAGAAAATCTGCGCGGTGCAGAAAATCAACGTCACGCCAAAGTAAAAGTTGGCGTTGGCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGCGCAAGCACGCTCGTGACCAACATTGTCGCGCCGACGATAAAATTGTTCTTCATGAACATAGAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGTCTCCGATGCAAGGATACGAGCGAAAGACGGCCCCCAGACCGATCAGCATCGTCGCAAGCATGATCGGTTCCTTGTGCAGCTTGAACGTGAGCGGAAACAGATA ] [+] EMBL CNS098RZ [ AATTTATTTGTTTGTTCTAAGCTTTTCTTTACAGCTGCTCTTATCCA CCTCCCCTGATGGG TAGATTGATAAAACTGTTTCATTTTAATACTCCAGCGTAATTCGTGCCTCCTTTCCGTCCACGAGCACACGAATGCCGTGCTTCAGACAGAACTCTCGCTTGATGTACCCAAAGAAGAGATCGGTTATTAGGAAAATCTGCGCGGTGCAGAAAATCAACGTCACGCCAAAGTAAAAGTTGGCGTTGGCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGCGCAAGCACGCTCGTGGCCAGCATTGTCGCACCGACGATAAAATTGTTCTTCATGAACATAGAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGTCTCCGATGCAGGGATACGAGCGAAAGACGGCCCCCAGACCGATCAGCATCGTCGCAAGCATGATCGGTTCCTTGTGCAGCTTGAACGTGAGCGGAAACAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACAGCGTCCGGAAGTGATCGAACATCTCGGTGAAGAAATACCAAAACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCATCCATCAGAAAGCTGCCGAAGTAATTAACTCCTAAAAATAGCGCCACAAACAACGCACTGCTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCCGGTTGGCAATGTGTAGGGCGCCCGGGGG GA CCAGAACAA ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGGGTGACAGCCCGTAGAAGAAC ] [-] EMBL BX624615 [ AGAAANTCAACGTCACGCCAAAGTAAAAGTTGGAGTTGNCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGCGCAAGCACGCTCGTGACCAGCATTGTCGCACCGACGATAAAATTGTTCTTCATGAACATAGAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGTCTCCGATGCAAGGATACGAGCGAAAGACGGCCCCCAGACCGATCAGCATCGTCGCAAGCATGATCGGTTCCTTGTGCAGCTTGAACGTGAGCGGAAACAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACAGCGTCCGGAAGTGATCGAACATCTCGGTAAAGAAGTACCAAAACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCACCCATCAGAAAGCTGCCGAAGTAATTAACGCCTAAAAATAGCGCCACAAACAACACACTGCTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCTGGTTGGCAATGTGTAGGGCGCCCGGGGC GA GCAGAACAA ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGGTAGGCGAACCCCACGGACATCGGCACCGTGTGCATGTCCGTCTCGACTAGATGTAGCTCCTCCGTG ] [-] EMBL CNS098RY [ CCCCCGTTCTCCCTCAGCTCCCGGTTGGCAATGTGTAGGGCCCCCGGGGC GA CCAGAACAA ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCAAGCAGGAAATTGCTCCAAACGGTCGTCGTCTGCCCAACGCAGTTCAGGATGGTGTAGGGATCGAACAGGTAGGCGAACCCCACGGACATCGGCACCGTGTGCATGTCCGTCTCGACAAGATGCAGCTCCTCCGTGTCCTTTGCGTAGCTATCCTTTTCTTTTCGTTGTTTTTCGTACATTTCGCGGATGAATACACGCGCTGCCAGCAGGAGAAGGATGCCGGTCGCTACGTCTAGCAGGATGAACAGGGACGGTATGGCACTGGGGACGTTATCGAGCAGCCAGCGGGAGGCATGCAGTATGAGCGGGTTTTTGTGGTACACGTCGCCATCGTACGGATTTACTCCGTTCGCGTACAGATAGGCACCTTCCTCGACCCTCTTCCACGAGTTGATGGGTGTGGACACCTCCACCCGGTTCTGTATCCCGTGGGAATAGCGGGAGTTCATAAGCAGGAACCGCACGGCCGCGGCCACTCCTACACTTATTGCTAGTTTCA TTTTTACCTTAT GCCCTTGGTCCGAGTTCAGCTCCAACGAGACAGTTCCAGCGCTCTGTGATGTATTGTTTAACATGTAAACCTAATGTTCAAGCTCGCAATTCACAATTCCAGCCTCGCAATAGTCACATATCAATCCACATTCTCGTCAATTTTGGATACAAGCCCGGT] [-] EMBL BM646839 [ CCTGGTTGGCAATGTGTAGGGCGCCCGGGGC GA GCAGAACAA ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAATGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGGTAAGCGAACCCCACGGACATCGGTACCGTGTGCATGTCCGTCTCGACTAGATGTAGCTCCTCCGTGTCCTTTGCGTAGCTATCCTTTTCTTTTCGTTGTTTTTCGTACATTTCGCGGATGAATACACGCGCTGCTAGCAGGAGAACGATGCCGGTCGCTACGTCTAGCAGGATGAACAGGGACGGTATGGCACTGGGGACGTTATCGAGCAGCCAGCGGGAGGCATGCAGTATGAGCGGGTTTTTGTGGTACACGTCGCCATCGTACGGATTCACTCCGTTCGCATACAGATAGGCACCTTCCTCGACCCTCTTCCACGAGTTGATGGGTGTGGACACCTCCACCCGGTTCTGTATCCCGTGGGAATAGCGGGAGTTCATAAGCAGGAACCGCACGGCCGCGGCCACTCCTACACTTATTGCTAGTTTCATTTTTTCCCCTATCGCCCTTGGTCCGAGTTCAGCTCCAACGAGACcgg ] [-] EMBL BX619846 [ CCGGGGGCGGAGGCAGAACAANACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCCAGCAGGAAATGGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGNACAGGTAGGCGAACCCCACGGACA ] consensusID : consensus_7547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [ACGTGCTCCGATGCCAAGAATACGGAGCGATAAGTACCGNCCCCCCAGGACCGATNCAGGCATCGTTCGGCAAGNCATGGATCGGTTCCCTTGTGCCAGCTTGAACCGTGAGNCGGGAATACCAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACCAGCGTCCGGAAGTGATCGAACATCTCGGTGAAGAAGTACCAAANACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCACCCATCAGAAAGCTGCCGAAGTAATTAACGCCTAAAAATAGCGCCACAAACAACACACTGGTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCTGGTTGGCAATGTGTAGGGCGCCCGGGGCGAGCAGAACAAACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCATAGAAGAATGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGTAAACCTCGGG] [-] EMBL AL929946 [ACGTGCTCCGATGCCAAGAATACGGAGCGATAAGTACCGNCCCCCCAGGACCGATNCAGGCATCGTTCGGCAAGNCATGGATCGGTTCCCTTGTGCCAGCTTGAACCGTGAGNCGGGAATACCAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACCAGCGTCCGGAAGTGATCGAACATCTCGGTGAAGAAGTACCAAANACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCACCCATCAGAAAGCTGCCGAAGTAATTAACGCCTAAAAATAGCGCCACAAACAACACACTGGTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCTGGTTGGCAATGTGTAGGGCGCCCGGGGCGAGCAGAACAAACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCATAGAAGAATGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGTAAACCTCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7547#0 TGAAAATGTAATTTAATTTATTTGTTTGTTCTAAGCTTTTCTTTACAGCTGCTCTTATCC 60 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 ACCTCCCCCCCGGGGTAGATTGATAAAGCTGTTTCATTTTAATACTCCAGCGTAATTCGT 120 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 GCCTCCTTTCCGTCCACGAGCACACGAATGCCGTGCTTCAGACAGAACTCTCGCTTGATG 180 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 TACCCAAAGAAGAGATCGGTTATTAAGAAAATCTGCGCGGTGCAGAAAATCAACGTCACG 240 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 CCAAAGTAAAAGTTGGCGTTGGCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGC 300 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 GCAAGCACGCTCGTGACCAGCATTGTCGCACCGACGATAAAATTGTTCTTCATGAACATA 360 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 GAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGT-CTCCGATGC-AAG 418 consensus_7547#1 ------------------------------------------ACGTGCTCCGATGCCAAG 18 **** ********* *** consensus_7547#0 GATACG-AGCGAAAGA---CGGCCCCC--AGACCGATC--AGCATCGTC--GCAAGC-AT 467 consensus_7547#1 AATACGGAGCGATAAGTACCGNCCCCCCAGGACCGATNCAGGCATCGTTCGGCAAGNCAT 78 ***** ***** * ** ***** ******* ******* ***** ** consensus_7547#0 G-ATCGGTTCC-TTGTGC-AGCTTGAAC-GTGAGCGGAAA----CAGATACAGCAGCGTG 519 consensus_7547#1 GGATCGGTTCCCTTGTGCCAGCTTGAACCGTGAGNCGGGAATACCAGATACAGCAGCGTG 138 * ********* ****** ********* ***** * * **************** consensus_7547#0 GCGTTGATCTGGAACGAGTACAGGAAC-AGCGTCCGGAAGTGATCGAACATCTCGGTGAA 578 consensus_7547#1 GCGTTGATCTGGAACGAGTACAGGAACCAGCGTCCGGAAGTGATCGAACATCTCGGTGAA 198 *************************** ******************************** consensus_7547#0 GAAATACCAAAA-CAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCAT 637 consensus_7547#1 GAAGTACCAAANACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCAT 258 *** ******* *********************************************** consensus_7547#0 ACGTTGCATCTAGGAAACTCCAGTCGCCATCCATCAGAAAGCTGCCGAAGTAATTAACTC 697 consensus_7547#1 ACGTTGCATCTAGGAAACTCCAGTCGCCACCCATCAGAAAGCTGCCGAAGTAATTAACGC 318 ***************************** **************************** * consensus_7547#0 CTAAAAATAGCGCCACAAACAACGCACTGCTGCTCGCTATGCTACGAAACCGACTGCCAG 757 consensus_7547#1 CTAAAAATAGCGCCACAAACAACACACTGGTGCTCGCTATGCTACGAAACCGACTGCCAG 378 *********************** ***** ****************************** consensus_7547#0 CGCTGCCCCCGTTCTCCCTCAGCTCCCGGTTGGCAATGTGTAGGGCGCCCGGGGCGAGCA 817 consensus_7547#1 CGCTGCCCCCGTTCTCCCTCAGCTCCTGGTTGGCAATGTGTAGGGCGCCCGGGGCGAGCA 438 ************************** ********************************* consensus_7547#0 GAACAAACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACC 877 consensus_7547#1 GAACAAACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACC 498 ************************************************************ consensus_7547#0 GCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCCAGCAGGAAATTGCTCCACACGGTCG 937 consensus_7547#1 GCTGACGGCGTGACAGCCCATAGAAGAATGCGGCCAGCAGGAAATTGCTCCACACGGTCG 558 ******************* ******** ******************************* consensus_7547#0 TCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGGTAGGCGAACCCCACGG 997 consensus_7547#1 TCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAG-----TAAACCTCGGG- 612 ******************************************* **** * * consensus_7547#0 ACATCGGCACCGTGTGCATGTCCGTCTCGACTAGATGTAGCTCCTCCGTGTCCTTTGCGT 1057 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 AGCTATCCTTTTCTTTTCGTTGTTTTTCGTACATTTCGCGGATGAATACACGCGCTGCCA 1117 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 GCAGGAGAAGGATGCCGGTCGCTACGTCTAGCAGGATGAACAGGGACGGTATGGCACTGG 1177 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 GGACGTTATCGAGCAGCCAGCGGGAGGCATGCAGTATGAGCGGGTTTTTGTGGTACACGT 1237 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 CGCCATCGTACGGATTTACTCCGTTCGCGTACAGATAGGCACCTTCCTCGACCCTCTTCC 1297 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 ACGAGTTGATGGGTGTGGACACCTCCACCCGGTTCTGTATCCCGTGGGAATAGCGGGAGT 1357 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 TCATAAGCAGGAACCGCACGGCCGCGGCCACTCCTACACTTATTGCTAGTTTCATTTTTA 1417 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 CCTTATGCCCTTGGTCCGAGTTCAGCTCCAACGAGACAGTTCCAGCGCTCTGTGATGTAT 1477 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 TGTTTAACATGTAAACCTAATGTTCAAGCTCGCAATTCACAATTCCAGCCTCGCAATAGT 1537 consensus_7547#1 ------------------------------------------------------------ consensus_7547#0 CACATATCAATCCACATTCTCGTCAATTTTGGATACAAGCCCGGT 1582 consensus_7547#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||