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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 880 fasta sequence
[GGCAGAATCGGCACGATGGAGCTTTTGCGTAAAATTATTGCAAAATGAAGCCTGTGCTTCTATTTTTAGCTTTCCTGCTAGTCGTCAACAGTGCGGCAGCGTTCCGTTTTAAGGGCTTGGAGTTTTACATGCAGCTGTGGAACGGTGAATTTCTCGAGTCGAACTCCTTCGGTGGGGACAACGATGCGAAAGTGGCCGAGAAAGCGGAGGCCGTCGTCGAAAAAAAAGCGCCCGTGGTCTATGTCTATAAAAGCGGCCTGTACGATTACCTCACCTACTGGGACAAGGGGATGTGCTCGCTGGATCAAGGGAACGACCAGGACGATTCGGACGGTGGTCGCAAATCGCCGCTGCGCGTGAACTGTACGCCGCTGGAGGGCAACGGAACGCTGTACATCATCACCTCGCTGCAGGATATAGTGAAAGGGTTGTCACCGCACGCTGCCGCCACCAACGCGACCAACCGGAACGAGGTGAACAACTGCTTCCTGATGCTGTTCTACACCAAAACCTGCATCCACAGTGCGATGGTGGCGCCCCACGTTTAACGCGCTCGCCCGCCACGTTCCCCGACCTGATGGTGACCGCGATCGATGCGCACAAGTTTGCCACTTTCTCAACGCGGAGTTCGGCATGTGTCGGGCTGNCCGAACGATCCATGGCTTGTTCCCAACCAGGGGCCGGAACCGGCTAGGGTTGCAGGTTACAACCGGGGGAACNGGGAAAATTGACCGCTTAACTTGGTCGGCTTGGGCCAAAGGTTTCCCGTNGAACAAACGGCCACCACGGGGGCATTCACGGAAGGCCCGAAGGGCTTGGCGAAATTCAGGAAAGAAACGGGCACACGGGCGAAACAGGGTTGAGCTTGGCAGCACTGACC]
[+] EMBL BX468118 [GGCAGAATCGGCACGATGGAGCTTTTGCGTAAAATTATTGCAAAATGAAGCCTGTGCTTCTATTTTTAGCTTTCCTGCTAGTCGTCAACAGTGCGGCAGCGTTCCGTTTTAAGGGCTTGGAGTTTTACATGCAGCTGTGGAACGGTGAATTTCTCGAGTCGAACTCCTTCGGTGGGGACAACGATGCGAAAGTGGCCGAGAAAGCGGAGGCCGTCGTCGAAAAAAAAGCGCCCGTGGTCTATGTCTATAAAAGCGGCCTGTACGATTACCTCACCTACTGGGACAAGGGGATGTGCTCGCTGGATCAAGGGAACGACCAGGACGATTCGGACGGTGGTCGCAAATCGCCGCTGCGCGTGAACTGTACGCCGCTGGAGGGCAACGGAACGCTGTACATCATCACCTCGCTGCAGGATATAGTGAAAGGGTTGTCACCGCACGCTGCCGCCACCAACGCGACCAACCGGAACGAGGTGAACAACTGCTTCCTGATGCTGTTCTACACCAAAACCTGCATCCACAGTGCGATGGTGGCGCCCCACGTTTAACGCGCTCGCCCGCCACGTTCCCCGACCTGATGGTGACCGCGATCGATGCGCACAAGTTTGCCACTTTCTCAACGCGGAGTTCGGCATGTGTCGGGCTGNCCGAACGATCCATGGCTTGTTCCCAACCAGGGGCCGGAACCGGCTAGGGTTGCAGGTTACAACCGGGGGAACNGGGAAAATTGACCGCTTAACTTGGTCGGCTTGGGCCAAAGGTTTCCCGTNGAACAAACGGCCACCACGGGGGCATTCACGGAAGGCCCGAAGGGCTTGGCGAAATTCAGGAAAGAAACGGGCACACGGGCGAAACAGGGTTGAGCTTGGCAGCACTGACC]
[+] EMBL BX614300 [ GAGTTTTACATGCAGCTGTGGAACGGTGAATTTCTCGAGTCGAACTCCTTCGGTGGGGACAACGATGCGAAAGTGGCCGAGAAAGCGGAGGCCGTCGTCGAAAAAAAAGCGCCCGTGGTCTATGTCTATAAAAGCGGCCTGTACGATTACCTCACCTACTGGGACAAGGGGATGTGCTCGCTGGATCAAGGGAACGACCAGGACGATTCGGACGGTGGTCGCAAATCGCCGCTGCGCGTGAACTGTACGCCGCTGGAGGGCAACGGAACGCTGTACATCATCACCTCGCTGCAGGATATAGTGAAAGGGTTGTCACCGCACGCTGCCGCCACCAACGCGACCAACCGGAACGAGGTGAACAACTGCTTCCTGATGCTGTTCTACACCAAAACCTGCATCCACAGTGCGATGGTGGCGCCCCAC TTTAACGCGCTCGCCCGCCAC TTCCCCGACCTGATGGTGACCGCGATCGATGCGCACAA TTT CCACTTTCTCAACGCGTAGTTCGGCAT TGTCGG ]
[+] EMBL AGA284617 [ CTCCTTCGGTGGGGACAACGATGCGAAAGTGGCCGAGAAAGCGGAGGCCGTCGTCGAAAAAAAAGCGCCCGTGGTCTATGTCTATAAAAGCGGCCTGTACGATTACCTCACCTACTGGGACAAGGGGATGTGCTCGCTGGATCAAGGGAACGACCAGGACGATTCGGACGGTGGTCGCAAATCGCCGCTGCGCGTGAACTGTACGCCGCTGGAGGGCAACGGAACGCTGTACATCATCACCTCGCTGCAGGATATAGTGAAAGGGTTGTCACCGCACGCTGCCGCCACCAACGCGACCAACCGGAACGAGGTGAACAACTGCTTCCTGATGCTGTTCTA ]
consensusID : consensus_7554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 787 fasta sequence
[GATTCGGACGGTGGTCGCAAATCGCCGCTGCGCGTGAACTGTACGCCGCTGGAGGGCAACGGAACGCTGTACATCATCACCTCGCTGCAGGATATAGTGAAAGGGTTGTCACCGCACGCTGCCGCCACCAACGCGACCAACCGGAACGAGGTGAACAACTGCTTCCTGATGCTGTTCTACACCAAAACCTGCATCCACAGTGCGATGGTGGCGCCCCACTTTAACGCGCTCGCCCGCCACTTCCCCGACCTGATGGTGACCGCGATCGATGCGCACAATTTCCACTTTCTCAACGCGGAGTTCGGCATTGTCGGGCTGCCGACGATCATGCTGTTCCACCAGGGCCGACCGCTGGTGCGGTACAACGGGACGGAAATGACGCTACTGTCGCTGGCCAAGTTCGTGACACGCCACACGGGCATCGAGCCGAGGCTGGCGAATCAGAAGAGCGGCACGGCGACGGTGCTGCACTACATATCGGACGATTTTAAGGGCCCGCTGTCGAACAAGGTGGAGCACCGGACGGACTACTGGCTGTATGTGGCGTGGGCATTCATTCTCGTCTGCCTGAGCTACTACTTCTCCAAGTCCACCCTATACGCGCAGATCGTGGAGATGATCAAACGAAACTGGCGAGAATCGGCGGCCCAGCACGGTTAGAAAGGGGTCGGAATGGGGGGGGGGGGGTGCTTTCAGTGGGATTATCAGTGATTGTTTTAGCTATTCAGCTGTATATGCTAGTTTAATTCTAAATTTAATAAAGTAGAGATTTACCAATTAAAAAAAA]
[+] EMBL BX608829 [GATTCGGACGGTGGTCGCAAATCGCCGCTGCGCGTGAACTGTACGCCGCTGGAGGGCAACGGAACGCTGTACATCATCACCTCGCTGCAGGATATAGTGAAAGGGTTGTCACCGCACGCTGCCGCCACCAACGCGACCAACCGGAACGAGGTGAACAACTGCTTCCTGATGCTGTTCTACACCAAAACCTGCATCCACAGTGCGATGGTGGCGCCCCACTTTAACGCGCTCGCCCGCCACTTCCCCGACCTGATGGTGACCGCGATCGATGCGCACAATTTCCACTTTCTCAACGCGGAGTTCGGCATTGTCGGGCTGCCGACGATCATGCTGTTCCACCAGGGCCGACCGCTGGTGCGGTACAACGGGACGGAAATGACGCTACTGTCGCTGGCCAAGTTCGTGACACGCCACACGGGCATCGAGCCGAGGCTGGCGAATCAGAAGAGCGGCACGGCGACGGTGCTGCACTACATATCGGACGATTTTAAGGGCCCGCTGTCGAACAAGGTGGAGCACCGGACGGACTACTGGCTGTATGTGGCGTGGGCATTCATTCTCGTCTGCCTGAGCTACTACTTCTCCAAGTCCACCCTATACGCGCAGATCGTGGAGATGATCAAACGAAACTG ]
[-] EMBL AGA283334 [ GAAATGACGCTACTGTCGCTGGCCAAGTTCGTGACACGCCACACGGGCATCGAGCCGAGGCTGGCGAATCAGAAGAGCGGCACGGCGACGGTGCTGCACTACATATCGGACGATTTTAAGGGCCCGCTGTCGAACAAGGTGGAGCACCGGACGGACTACTGGCTGTATGTGGCGTGGGCATTCATTCTCGTCTGCCTGAGCTACTACTTCTCCAAGTCCACCCTATACGCGCAGATCGTGGAGATGATCAAACGAAACTGGCGAGAATCGGCGGCCCAGCACGGTTAGAAAGGGGTCGGAATGGGGGGGGGGGGGTGCTTTCAGTGGGATTATCAGTGATTGTTTTAGCTATTCAGCTGTATATGCTAGTTTAATTCTAAATTTAATAAAGTAGAGATTTACCAATTAAAAAAAA]
[-] EMBL BX611606 [ GTGCTGCACTACATATCGGACGATTTTAAGGGCCCGCTGTCGAACAAGGTGGAGCACCGGACGGACTACTGGCTGTATGTGGCGTGGGCATTCATTCTCGTCTGCCTGAGCTACTACTTCTCCAAGTCCACCCTATACGCGCAGATCGTGGAGATGATCAAACGAAACTGGCGAGAATCGGCGGCCCAGCACGGTTAGAAAGGGGTCGGAATGGGGGGGGGGGGGTGCTTTCAGTGGGATTATCAGTGATTGTTTTAGCTATTCAGCTGTATATGCTAGTTTAATTCTAAATTTAATAAAGTAGAGAT ]
consensusID : consensus_7554#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CCCGAGGTNACAAAGCATCGCAGAGCAGAAAGAAATCACGCTTTTGCGTAAAATTATTGCAAAATGAAGCCTGTGCTTCTATTTTTAGCTTTCCTGCTAGTCGTCAACAGTGCGGCAGCGTTCCGTTTTAAGGGCTTGGAGTTTTACATGCAGCTGTGGAACGGTGAATTTCTCGAGTCGAACTCCTTCGGTGGGGACAACGATGCGAAAGTGGCCGAGAAAGCGGAGGCCGTCGTCGAAAAAAAAGCGCCCGTGGTCTATGTCTATAAAAGCGGACTGTACGATTACCTCACCTACTGGGTACAAGGCGGCATTGTGCTCAGCTAGGATCCAATGGCGTANACGACCAGGACTGGATGTCNGACGGNTGCGATCGCCAAATCGCCGCTGGCAGCGTGAACCTGGTACCGCCCGCATGCGAGGGCGAAGCCGGAGACAGCTTGATACACTCAAATCAACGTCGANTGCAGAGACTAGTANNCTAGGNCAAATGCGNGGCTATTGGGTCCAACGCCGCGCAACGTCCTTGGCACGACCACAAGCGCGACAACGGGCAGAACGCAAAACCCGGTGACACCGGCACGGCTGAAACACAGCACCTGGACACTCTCCCGTGAACTGGCNTGTGACCTACAANCCTNAAATATCACCCGTG]
[+] EMBL AL929610 [CCCGAGGTNACAAAGCATCGCAGAGCAGAAAGAAATCACGCTTTTGCGTAAAATTATTGCAAAATGAAGCCTGTGCTTCTATTTTTAGCTTTCCTGCTAGTCGTCAACAGTGCGGCAGCGTTCCGTTTTAAGGGCTTGGAGTTTTACATGCAGCTGTGGAACGGTGAATTTCTCGAGTCGAACTCCTTCGGTGGGGACAACGATGCGAAAGTGGCCGAGAAAGCGGAGGCCGTCGTCGAAAAAAAAGCGCCCGTGGTCTATGTCTATAAAAGCGGACTGTACGATTACCTCACCTACTGGGTACAAGGCGGCATTGTGCTCAGCTAGGATCCAATGGCGTANACGACCAGGACTGGATGTCNGACGGNTGCGATCGCCAAATCGCCGCTGGCAGCGTGAACCTGGTACCGCCCGCATGCGAGGGCGAAGCCGGAGACAGCTTGATACACTCAAATCAACGTCGANTGCAGAGACTAGTANNCTAGGNCAAATGCGNGGCTATTGGGTCCAACGCCGCGCAACGTCCTTGGCACGACCACAAGCGCGACAACGGGCAGAACGCAAAACCCGGTGACACCGGCACGGCTGAAACACAGCACCTGGACACTCTCCCGTGAACTGGCNTGTGACCTACAANCCTNAAATATCACCCGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7554#0 -------------------------GGCAGAATCGGCACGA-TGGAGCTTTTGCGTAAAA 34
consensus_7554#2 -------CCCGAGGTNACAAAGCATCGCAGAGCAGAAAGAAATCACGCTTTTGCGTAAAA 53
consensus_7554#1 GATTCGGACGGTGGTCGCAAATCGCCGCTGCGCGTGAACTG--TACGCCGCTGG--AGGG 56
** * * ** ** *
consensus_7554#0 TTATTGCAAAATGAAGCCTGTGCTTCTATTTTTAGCTTTCCTGCTAG--TCGTCAACAGT 92
consensus_7554#2 TTATTGCAAAATGAAGCCTGTGCTTCTATTTTTAGCTTTCCTGCTAG--TCGTCAACAGT 111
consensus_7554#1 CAACGGAACGCTGTACATCATCACCTCGCTGCAGGATATAGTGAAAGGGTTGTCACC-GC 115
* * * ** * * * * * * ** ** * **** * *
consensus_7554#0 GCGGCAGCGTT-CCGTTTTAAGGGCTTGGAGTTTTACATGCAGCTGTGGAACGGTGAATT 151
consensus_7554#2 GCGGCAGCGTT-CCGTTTTAAGGGCTTGGAGTTTTACATGCAGCTGTGGAACGGTGAATT 170
consensus_7554#1 ACGCTGCCGCCACCAACGCGACCAACCGGAACGAGGTGAACAACTGCTTCCTGATGCTGT 175
** ** ** * *** ** *** * ** *
consensus_7554#0 TCTCGAGTCGAACTCCTTCGGTGGGGACAACGATG----CGAAAGTGGCCGAGAAAGCGG 207
consensus_7554#2 TCTCGAGTCGAACTCCTTCGGTGGGGACAACGATG----CGAAAGTGGCCGAGAAAGCGG 226
consensus_7554#1 TCTACACCAAAACCTGCATCCACAGTGCGATGGTGGCGCCCCACTTTAACGCGCTCGCCC 235
*** * *** * * * * ** * * * ** * **
consensus_7554#0 AGGCCGTCGTCGAAAAAAAAGCGCCCGTGGTCTATGTCTATAAAAGCGGCCTGTACGATT 267
consensus_7554#2 AGGCCGTCGTCGAAAAAAAAGCGCCCGTGGTCTATGTCTATAAAAGCGGACTGTACGATT 286
consensus_7554#1 GCCACTTCCCCGACCTGATGGTGACCGCGATCGATGCGCACAATTTCCACTTTCTCAACG 295
* ** *** * * * *** * ** *** * ** * * * *
consensus_7554#0 ---ACCTCACC--TACTGGG-ACAAGGGGATGTGCTCGCTGGATCAAGGG-----AACGA 316
consensus_7554#2 ---ACCTCACC--TACTGGGTACAAGGCGGCAT-TGTGCTCAGCTAGGATC---CAATGG 337
consensus_7554#1 CGGAGTTCGGCATTGTCGGGCTGCCGACGATCATGCTGTTCCACCAGGGCCGACCGCTGG 355
* ** * * *** * * * * * * *
consensus_7554#0 CCAGGACGATTCGGACGGTGGTCGCAAATCGCCGCTGCGCGTGAACTGTACGCCGCTGGA 376
consensus_7554#2 CGTANACGACCAGGACTG-GATGTCNGACGGNTGC-GATCGCCAAAT---CGCCGCTG-- 390
consensus_7554#1 TGCGGTACAACGGGACGGAAATGACG--CTACTGTCGCTGGCCAAGTTCGTGACACGCCA 413
* **** * * * * * * ** * * * *
consensus_7554#0 GGGCAACGGAACGCTGTACATCATCACCTCGCTGCAGGATATAGTGAAAGGGTTGTCACC 436
consensus_7554#2 --GCAGCGTGAACCTG-GTACCGCCCGCATGC--GAGGGCGAAGCCGGAGACAGCTTGAT 445
consensus_7554#1 CACGGGCATCGAGCCG-AGGCTGGCGAATCAGAAGAGCGGCACGGCGACGGTGCTGCACT 472
* * * * ** * *
consensus_7554#0 GCACGCTG-CCGCCACCAACGCGACCAACCGGAACGAGGTGAACAACTGCTTCC-TGATG 494
consensus_7554#2 ACACTCAAATCAACGTCGANTGCAGAGACTAGTANNCTA-GGNCAAATGCGNGG-CTATT 503
consensus_7554#1 ACATATCGGACGATTTTAAGGGCCCGCTGTCGAACAAGGTGGAGCACCGGACGGACTACT 532
** * * * * * * * *
consensus_7554#0 CTGTTCT-ACACCAAAACCTG-CATCCACA---GTGCGAT--GGTGGCGCCCCACGTTTA 547
consensus_7554#2 GGGTCCA-ACGCCGCG--CAA-CGTCCTTG---GCACGA----------CCACAAGCGCG 546
consensus_7554#1 GGCTGTATGTGGCGTGGGCATTCATTCTCGTCTGCCTGAGCTACTACTTCTCCAAGTCCA 592
* * * * * * * ** * ** *
consensus_7554#0 AC--GCGCTCGCCCGCCACGTTCCCCG--ACCTGATGGTGACCGCGATCGA-TGCGCACA 602
consensus_7554#2 AC--A-ACGGGCAGAACGCAAAACCCG--G--TGACACCGGC-ACGGCTGA-AACACAGC 597
consensus_7554#1 CCCTATACGCGCAGATCGTGGAGATGATCAAACGAAACTGGCGAGAATCGGCGGCCCAGC 652
* * ** * ** * * * * **
consensus_7554#0 AG--TTTGCCACTT-TCTCAACGCGGAGTTCGGCATGTGTCGGGCTGNCCGAACGATCCA 659
consensus_7554#2 AC--CTGGACACTC-TCCC---GTGAACT--GGCNTGTGACCTACAANCC---TNAAATA 646
consensus_7554#1 ACGGTTAGAAAGGGGTCGGAATGGGGGGGGGGGGGTGCTTTCAGTGGGATTA-TCAGTGA 711
* * * * ** * * ** ** * *
consensus_7554#0 TGGCTTGTTCCCAACCAGGGGCCGGAACCGGCTAGGGTTGCAGGTTACAACCGGGGGAAC 719
consensus_7554#2 TCACCCGTG--------------------------------------------------- 655
consensus_7554#1 TTGTTTTAGCTATTCAGCTGTATATGCTAGTTTAATTCTAAATTTAATAAAGTAGAGATT 771
*
consensus_7554#0 NGGGAAAATTGACCGCTTAACTTGGTCGGCTTGGGCCAAAGGTTTCCCGTNGAACAAACG 779
consensus_7554#2 ------------------------------------------------------------
consensus_7554#1 TACCAATTAAAAAAAA-------------------------------------------- 787
consensus_7554#0 GCCACCACGGGGGCATTCACGGAAGGCCCGAAGGGCTTGGCGAAATTCAGGAAAGAAACG 839
consensus_7554#2 ------------------------------------------------------------
consensus_7554#1 ------------------------------------------------------------
consensus_7554#0 GGCACACGGGCGAAACAGGGTTGAGCTTGGCAGCACTGACC 880
consensus_7554#2 -----------------------------------------
consensus_7554#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||