These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1881 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAGTTGATGCCAAAAAAATAACAATTGACCCTTTCTTTATCATCGGCCGCCCACAGCAGACACTGCTCGATCGGGCGGGCAACATTGATATAAATGCATCTCCAGCCATCGTGCGCCAAAGGAATCAGTTTCTGTGTTGCATTTGGCCCCACACTCCCTTGAAGCGCTTCGTGTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAATGGCGGCTGCACCTGCTGCTGCTGCTGCTGCTTTCAAAAACGAGTTGCTCTCTCCATCTTCGTACATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACATTCATTCACTGTCCCGCATTCATGCACAGTCCTCGCACTCGCACACACTGTCTCAATCATACTAACCTCTTCTCGCACGCTACAACGATTACGCAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGC-TCGGTAGATATGGGTGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTACTTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGTTCCAAACCGCAAATAGCCAATTTCGCCATTTTGCACATTATAATACACTATCTTCGCAGCTCGCCCTGTACTGCCTGTACTATCTGCAGACTGCAGATCATGCTTTCATTACTTTCTAACTCCGCGCGCTAAACACCACACCACGTTCTACTTATACCACATATCGTTTTCTTCCTCCGGTTTCGAGTGTTTTTTCTTCTTCTTTCACTCACTCGAAACGGATAAGGCACTTGAATTGCTTGCAGTTCCTTGTGTCAGCTTGCACG-CGGGGGTGTGTGTGTAATCTTGCCGCTTATCCGTACACGATTACTCACTCCGTGCGGTCATTTTTCCTCCTCTCATTCTTGTCGCCTA--TCTTGCGCTACATCCCTCACATACTACGTAATTGGATACTAGTTGCGCGCTTCAAATCTCACATTCATCTAAGTGGATTTAAAAAAAAAAAAGATTTAAAAATAAAATAATAATCCGTACGTACAAGCTAATCGACTAACCACTAATAATTCGTCCAATGTGCACAAGCACATCGGTGCCCGTGTGCAAGCAGGATGTAGTAATAATAAGAGATGTATATAGGTATCATTAACGGAACATAACTCGGACAAGGAGCAGTTTTCCCCCGTTCAGTACGGGAACCACGCTGCGTTTCCTTTTCATTGTTTCCTAAGCTGCGATCCCACCATACATACACATACACACACATACATACGCACACTACTTACACTCTTCTTTCCCTATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGCTTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAAACGATCTGGTCTATGTAGGCTGATGGTATTCCTTGGAGATGCAAGAACATTGTAAGTAGTATTTGT-CTT-TGTGTGTGTGTGTGTGCATGTCAGTGGATGCGTGTACTAATCGCTGGCGTAGTGGGCTACTATTACTCTACATAAGATGGTTCTACGCGTTCTGTGGCTACGGCAAACGTCGCCGGACGTTAGATGATGTCGTAGAGCGTGTTATCCGGTTTACTACTCGTCGGCGGCCACCGCTGCAACGGCGGCGGCGGCTGCTGCCGCTGCTGCCGCTGCACTGCCATTGCCGCTGCTGGCTGCCCCACCGTTGAATGCCACGGACGCGTGGGCGGACGCGTGGGCGG] [+] EMBL BM576313 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAGTTGATGCCAAAAAAATAACAATTGACCCTTTCTTTATCATCGGCCGCCCACAGCAGACACTGCTCGATCGGGCGGGCAACATTGATATAAATGCATCTCCAGCCATCGTGCGCCAAAGGAATCAGTTTCTGTGTTGCATTTGGCCCCACACTCCCTTGAAGCGCTTCGTGTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAATGGCGGCTGCACCTGCTGCTGCTGCTGCTGCTTTCAAAAACGAGTTGCTCTCTCCATCTTCGTACATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACATTCATTCACTGTCCCGCATTCATGCACAGTCCTCGCACTCGCACACACTGTCTCAATCATACTAACCTCTTCTCGCACGCTACAACGATTACGCAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGC TCGGTAGATATGGGTGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTACTTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGTTCCAAACCGCAAATAGCCAATTTCGCCAT ] [-] EMBL BM622560 [ CGAGTTGCTCTCTCCATCTTCGTATATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACATTCATTCACTGTCCCGCATTCATGCACAGTCCTCGCACTCGCACACACTGTCTCAATCATACTAACCTCTTCTCGCACGCTACAACGATTACGCAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGCGCCGGTAGATATGAGAGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTAC TCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGTTCCAAACCGCAAATAGCCAATTTCGCCATTTTGCACATTATAATACACTATCTTCGCAGCTCGCCCTGTACTGCCTGTACTATCTGCAGACTGCAGATCATGCTTTCATTACTTTCTAACTCCGCGCGCTAAACACCACACCACGTTCTACTTATACCACATATCGTTTTCTTCCTCCGGTTTCGAGTGTTTTTTCTTCTTCTTTCACTCACTCGAAACGGATAAGGCACTTGAATTGCTTGCAGTTCCTTGTGTCAGCTTGCACG CGG ] [-] EMBL BM625971 [ AGACTGCAGATCATGCTTTCATTACTTTCTAACTCCGCGCGCTAAACACCACACCACGTTCTACTTATACCACATATCGTTTTCTTCCTCCGGTTTCGAGTGTTTTTTCTTCTTCTTTCACTCACTCGAAACGGATAAGGCACTTGAATTGCTTGCAGTTCCTTGTGTCAGCTTGCACG GTGGGTGTGTGTGTAATCTTGCCGCTTATCCGTACACGATTACTCACTCCGTGCGGTCATTTTTCCTCCTCTCATTCTTGTCGCCTA TCTTGCGCTACATCCCTCACATACTACGTAATTGGATACTAGT ] [-] EMBL BM625627 [ AGGCACTTGAATTGCTTGCAGTTCCTTGTGTCAGCTTGCACGATGGGTGTGTGTGTGTAATCTTGTCGCTTATCCGGACACGATTACTCACTCCGTGCGATCATTTTTCCTTTTCTCATTCTTCTCGCCTAACTCTCGCGCTACATCCCTCACATACTACGTAATTGGATACTAGTTGCGCGCTTCAAATCTCACATTCATCTAAGTGGATTTAAAAAAAAAAAAGATTTAAAAATAAAATAATAATCCGTACGTACAAGCTAATCGACTAACCACTAATAATTCGTCCAATGTGCACAAGCACATCGGTGCCCGTGTGCAAGCAGGATGTAGTAATAATAAGAGATGTATATAGGTATCATTAACGGAACATAACTCGGACAAGGAGCAGTTTTCCCCCGTTCAGTACGGGAACCACGCTGCGTTTCCTTTTCATTGTTTCCTAAGCTGCGATCCCACCATACATACACATACACACACATACATACGCACACTACTTACACTCTTCTTTCCCTATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGCTTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAAACGATCCGG ] [-] EMBL BM651126 [ CGTTACATCCCTCACATACTACGTAATTGGATACTAGTTGCGCGCTTCAAATCTCACATTCATCTAAGTGGATTTAAAAAAAAAAAAGATTTAAAAATAAAATAATAATCCGTACGTACAAGCTAATCGACTAACCACTAATAATTCGTCCAATGTGCACAAGCACATCGGTGCCCGTGTGCAAGCAGGATGTAGTAATAATAAGAGATGTATATAGGTATCATTAACGGAACATAACTCGGACAAGGAGCAGTTTTCCCCCGTTCAGTACGGGAACCACGCTGCGTTTCCTTTTCATTGTTTCCTAAGCTGCGATCCCACCATACATACACATACACACACATACATACGCACACTACTTACACTCTTCTTTCCCTATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGCTTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAAACGATCTTGTCTATGTAGGCTGATGGTATTCCTTGGAGATGCAAGAACATTGTAAGTAGTATTTGTGCTTGTGTGTGTGTGTGTGTGCATGTCAGTGGATGCGTGTACTAATCGCTGGCGTAGTGGGCTACTATTACTCTACATAAGATGGTTCTACGCGTTCTGTGGCTACGGCAAACGTCGCCGG ] [-] EMBL BM629638 [ TATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGCTTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAAACGATCTAGTCTATGTCGGCTGATGGTATTTCTTGGAGATGCGAGAACATTGTAAGTAGTATTTGT CTT TGTGTGTGTGTGTGTGCATGTCAGTGGATGCGTGTACTAATCGCTGGCGTAGTGGGCTACTATTACTCTACATAAGATGGTTCTACGCGTTCTGTGGCTACGGCAAACGTCGCTTAACGTTAGATGATGTCGTAGAGCGTGTTATCCGGTTTACTACTCGTCGGCGGCCACCGCTGCAACGGCGGCGGCGGCTGCTGCCGCTGCTGCCGCTGCACTGCCATTGCCGCTGCTGGCTGCCCCACCGTTGAATGCCACGGACGCGTGGGCGGACGCGTGGGCGG] consensusID : consensus_7557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [GTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAATGGCGGCTGCACCTGCTGCTGCTGCTGCTGTTGCTGCTTTCAAAAACGAGTTGCTCTCTCCATCTTCGTATATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACAGTTCATTCCAACTGGTCCCCGCAATTCATGCCAACAAGTCCCTTCGCACCTCGCACACAACTGTTCCTTCAATCATACTTAAACCTCTTCCTCGCACCGCTTACAACGATTACGCAAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGCGCCGGTAGATATGAGAGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTACTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGCCTCGTGCCGATCT] [-] EMBL BX467812 [GTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAATGGCGGCTGCACCTGCTGCTGCTGCTGCTGTTGCTGCTTTCAAAAACGAGTTGCTCTCTCCATCTTCGTATATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACAGTTCATTCCAACTGGTCCCCGCAATTCATGCCAACAAGTCCCTTCGCACCTCGCACACAACTGTTCCTTCAATCATACTTAAACCTCTTCCTCGCACCGCTTACAACGATTACGCAAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGCGCCGGTAGATATGAGAGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTACTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGCCTCGTGCCGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7557#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAGTTGATGCCAAAAAAATAACAATTGACC 60 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 CTTTCTTTATCATCGGCCGCCCACAGCAGACACTGCTCGATCGGGCGGGCAACATTGATA 120 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 TAAATGCATCTCCAGCCATCGTGCGCCAAAGGAATCAGTTTCTGTGTTGCATTTGGCCCC 180 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 ACACTCCCTTGAAGCGCTTCGTGTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAA 240 consensus_7557#1 ----------------------GTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAA 38 ************************************** consensus_7557#0 TGGCGGCTGCACCTGCTGCTGCTGCTGCTG------CTTTCAAAAACGAGTTGCTCTCTC 294 consensus_7557#1 TGGCGGCTGCACCTGCTGCTGCTGCTGCTGTTGCTGCTTTCAAAAACGAGTTGCTCTCTC 98 ****************************** ************************ consensus_7557#0 CATCTTCGTACATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATG 354 consensus_7557#1 CATCTTCGTATATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATG 158 ********** ************************************************* consensus_7557#0 GCTAGAATATTGGACCACA-TTCATTC--ACTG--TCCCGCA-TTCATGC--ACAG---T 403 consensus_7557#1 GCTAGAATATTGGACCACAGTTCATTCCAACTGGTCCCCGCAATTCATGCCAACAAGTCC 218 ******************* ******* **** ****** ******* *** consensus_7557#0 CCTCGCAC-TCGCACACA-CTGTC---TCAATCATACT--AACCTCTTC-TCGCACG--C 453 consensus_7557#1 CTTCGCACCTCGCACACAACTGTTCCTTCAATCATACTTAAACCTCTTCCTCGCACCGCT 278 * ****** ********* **** *********** ********* ****** consensus_7557#0 TACAACGATTACGCAAA-CATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGT 512 consensus_7557#1 TACAACGATTACGCAAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGT 338 ***************** ****************************************** consensus_7557#0 TATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGC-TCGGTAGATATG 571 consensus_7557#1 TATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGCGCCGGTAGATATG 398 *********************************************** *********** consensus_7557#0 GGTGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACAC 631 consensus_7557#1 AGAGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACAC 458 * ********************************************************* consensus_7557#0 GTACTTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGTTCCAAACCGCAA 691 consensus_7557#1 GTACT-CGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGCCTCGTGCCG-AT 516 ***** ***************************************** * *** * consensus_7557#0 ATAGCCAATTTCGCCATTTTGCACATTATAATACACTATCTTCGCAGCTCGCCCTGTACT 751 consensus_7557#1 CT---------------------------------------------------------- 518 * consensus_7557#0 GCCTGTACTATCTGCAGACTGCAGATCATGCTTTCATTACTTTCTAACTCCGCGCGCTAA 811 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 ACACCACACCACGTTCTACTTATACCACATATCGTTTTCTTCCTCCGGTTTCGAGTGTTT 871 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 TTTCTTCTTCTTTCACTCACTCGAAACGGATAAGGCACTTGAATTGCTTGCAGTTCCTTG 931 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 TGTCAGCTTGCACGCGGGGGTGTGTGTGTAATCTTGCCGCTTATCCGTACACGATTACTC 991 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 ACTCCGTGCGGTCATTTTTCCTCCTCTCATTCTTGTCGCCTATCTTGCGCTACATCCCTC 1051 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 ACATACTACGTAATTGGATACTAGTTGCGCGCTTCAAATCTCACATTCATCTAAGTGGAT 1111 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 TTAAAAAAAAAAAAGATTTAAAAATAAAATAATAATCCGTACGTACAAGCTAATCGACTA 1171 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 ACCACTAATAATTCGTCCAATGTGCACAAGCACATCGGTGCCCGTGTGCAAGCAGGATGT 1231 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 AGTAATAATAAGAGATGTATATAGGTATCATTAACGGAACATAACTCGGACAAGGAGCAG 1291 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 TTTTCCCCCGTTCAGTACGGGAACCACGCTGCGTTTCCTTTTCATTGTTTCCTAAGCTGC 1351 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 GATCCCACCATACATACACATACACACACATACATACGCACACTACTTACACTCTTCTTT 1411 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 CCCTATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGC 1471 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 TTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAA 1531 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 ACGATCTGGTCTATGTAGGCTGATGGTATTCCTTGGAGATGCAAGAACATTGTAAGTAGT 1591 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 ATTTGTCTTTGTGTGTGTGTGTGTGCATGTCAGTGGATGCGTGTACTAATCGCTGGCGTA 1651 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 GTGGGCTACTATTACTCTACATAAGATGGTTCTACGCGTTCTGTGGCTACGGCAAACGTC 1711 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 GCCGGACGTTAGATGATGTCGTAGAGCGTGTTATCCGGTTTACTACTCGTCGGCGGCCAC 1771 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 CGCTGCAACGGCGGCGGCGGCTGCTGCCGCTGCTGCCGCTGCACTGCCATTGCCGCTGCT 1831 consensus_7557#1 ------------------------------------------------------------ consensus_7557#0 GGCTGCCCCACCGTTGAATGCCACGGACGCGTGGGCGGACGCGTGGGCGG 1881 consensus_7557#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||