These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1894 fasta sequence [CCGCCCACGCGTCCGATAGAAGAGATTCTCAAAAAAGCGAAGATGAGGAAGACAATTCGTTTGTTCTTTTACTGACACATAAGGAACAAACGAAAAAAACAACAGCTGCTCAAGTTGGGTCGTATCGTTCAATTGACTGCCGAAGCATCTACGGTTGGAAAATCATCCAGTGAAAATGAGCACGAGGAAGAAAGCACAGAAGAGTCATGGGGAAGAAAATTTAATATCAGCTTGTTGGATCAACACACTGAACTTAAAAAGATAGCAGAAGCTAAGAAAATTAGCGCAGTAGAAAAACAATTGAAAGAGGAGGAGAAAATCCTCGAAAGTGTCGCTGAAAAAAAAGCACTCATGGGTGTTGCTGAGTTGGCCAAGGGAATACAGTATGAAGATCCTATCAAAACCAGCTGGACGCCTCCAAGATATATCTTATCCAAACCGGAATCCCGTCACGAGAAAATTCGCGAAAAGCTCCGTATACTGACGGAAGGAGAAAATGTACCACCGCCATTGCGTACGTTTCGTGAAATGAAGCTCCCAAAAGCCGTGTTAGCA-GCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTGCAAGGTATA-CCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGGCTCGGGTAAAACGTTGGTTTTTGTTTTACCAATCATTATGTTCTGTTTAGAGCAAGAATTACGGCTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTAGCGAAACAAACACATGACATAATTCAGTACTATTGTCGCCATCTTCAGGAAGCTGGTATGCCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATCATTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGCTAAATCTGCTTTAGTAAAACCAGTTACAATCAACGTTGGACGTGCGGGTGCCGCTTCAATGAACGTAACTCAAGACGTGGAATACGTAAAGCAGGAGGCAAAAGTTGTGTATTTGTTAGAGTGTTTGCAGAAAACACCACCTCCAGTACTGATATTTGCTGAGAAAAAGCAAGATGTCTACGGAATTCATGAATATTTATTAATTAAAGGGGTAGAAGCAGTAGCTATCCACGGAGGAAAAGATCAAGAAGAGCGATATCGGTCGGTCGAGTCATTTAGAAATCAAGAGAAGGACGTGCTAGTTGCCACTGACGTCGCATCTAAAGGTTTGGATTTTCCGGATGTGCAGCATGTAATTAATTATGATATGCCAGACGATATCGAAAACTACGTACATCGAATTGGTCGTACTGGTCGATCTGGATCAAAAGGTTTAGCGACAACATTTATCAATAAGGCGACAGAGCAGTTTGTACTATTGGATTTGAAACATCTTTTGATTGAAGCTCAACAAAAAGTTCCTCCGTTCTTGGGTGAACTATGCTCGGAAACAGAGAAATACGCAGATCTCGGTGATGGCTGTAGTTATTGTGGTGGTTTAGGTCACCGCATCACGGAATGTCCTAAACTTGAAGCCGTGCAAAGCAAACAAGCTTCTAATATTGGACGCAGAGATTATTTATCGAACACTGCTGCTGATTATTAATGTAGTTTCAGTACAGTAGCACTGCAGATGCACTATCTTATCTACAGCATTTATGATT] [+] EMBL BM580428 [CCGCCCACGCGTCCGATAGAAGAGATTCTCAAAAAAGCGAAGATGAGGAAGACAATTCGTTTGTTCTTTTACTGACACATAAGGAACAAACGAAAAAAACAACAGCTGCTCAAGTTGGGTCGTATCGTTCAATTGACTGCCGAAGCATCTACGGTTGGAAAATCATCCAGTGAAAATGAGCACGAGGAAGAAAGCACAGAAGAGTCATGGGGAAGAAAATTTAATATCAGCTTGTTGGATCAACACACTGAACTTAAAAAGATAGCAGAAGCTAAGAAAATTAGCGCAGTAGAAAAACAATTGAAAGAGGAGGAGAAAATCCTCGAAAGTGTCGCTGAAAAAAAAGCACTCATGGGTGTTGCTGAGTTGGCCAAGGGAATACAGTATGAAGATCCTATCAAAACCAGCTGGACGCCTCCAAGATATATCTTATCCAAACCGGAATCCCGTCACGAGAAAATTCGCGAAAAGCTCCGTATACTGACGGAAGGAGAAAATGTACCACCGCCATTGCGTACGTTTCGTGAAATGAAGCTCCCAAAAGCCGTGTTAGCA GCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTGCAAGGTATACCCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGG ] [+] EMBL BM616759 [ ccgCAGCTGGACGCCTCCAAGATATATCTTATCCAAACCGGAATCCCGTCACGAGAAAATTCGCGAAAAGCTCCGTATACTGACGGAAGGAGAAAATGTACCACCGCCATTGCGTACGTTTCGTGAAATGAAGCTCCCAAAAGCCGTGTTAGCA GCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTGCAAGGTATA CCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGGCTCGGGTAAAACGTTGGTTTTTGTTTTACCAATCATTATGTTCTGTTTAGAGCAAGAATTACGGCTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTAGCGAAACAAACACATGACATAATTCAGTGCTATTGTCGCCATCTTCAGGAAGCTGGTATGCCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATCATTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAAACTCTTTTATT ] [+] EMBL BX620210 [ CAAAAGCCGTGTTAGCATTCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTGCAAGGTATA CCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGGCTCGGGTAAAACGTTGGTTTTTGTTTTACCAATCATTATGTTCTGTTTAGAGCAAGAATTACGGCTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTAGCGAAACAAACACATGACATAATTCAGTACTATTGTCGCCATCTTCAGGAAGCTGGTATGCCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATCATTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGCTAAATCTGCTTTAGTAAAACCAGTTACAATCAACGTTGGACGTGCGGGTGCCGCTTCAATGAACGTAACTCAAGACGTGGAATACGTAAAGC ] [+] EMBL BX624917 [ TATGTTCTGTTTAGAGCAAGAATTACGGCTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTAGCGAAACAAACACATGACATAATTCAGTACTATTGTCGCCATCTTCAGGAAGCTGGTATGCCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATCATTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGCTAAATCTGCTTTAGTAAAACCAGTTACAATCAACGTTGGACGTGCGGGTGCCGCTTCAATGAACGTAACTCAAGACGTGGAATACGTAAAGCAGGAGGCAAAAGTTGTGTATTTGTTAGAGTGTTTGCAGAAAACACCACCTCCAGTACTGATATTTGCT ] [+] EMBL BX614833 [ aAGTTACAATCAACGTTGGAAGTGCGGGTGGCGCTTCAATGAACGTAACTCAAGAAGTGGAATACGTAAAGCAGGAGGCAAAAGTTGTGTATTTGTTAGAGTGTTTGCAGAAAAAACTATGTCTAGTACTGATATTTGCTGAGAAAAAGCAAGATGTCTACGGAATTCATGAATATTTATTAATTAAAGGGGTAGAA ] [+] EMBL BX623191 [ GTGCGGGTGCCGCTTCAATGAACGTAACTCAAGACGTGGAATACGTAAAGCAGGAGGCAAAAGTTGNGTATTTGTTAGAGTGTTTGCAGAAAACACCACCTCCAGTACTGATATTTGCTGAGAAAAAGCAAGATGTCGACGCAATTCATGAATATTTATTACTTAAAGGGGTAGAAGCAGTAGCTATCCACGGAGGAAAAGATCAAGAAGAGCGATATCGGTCGGTCGAGTCATTTAGAAATCAAGAGAAGGACGTGCTAGTTGCCACTGACGTCGCATCTAAAGGTTTGGATTTTCCGGATGTGCAGCATGTAATTAATTATGATATGCCAGACGATATCGAAAACTACGTACATCGAATTGGTCGTACTGGTCGATCTGGATCAAAAGGTTTAGCGACAACATTTATCAATAAGGCGACAGAGCAGTTTGTACTATTGGATTTGAAACATCTTTTGATTGAAGCTCAACAAAAAGTTCCTCCGTTCTTGGGTGAACTATGCTCGGAAACAGAGAAATACGCAGATCTCGGTGATGGCTGTAGTTATTGTGGTGGTTTAGGTCACCGCATCACGGAATGTCCTAAACTTGAAGCCGTGCAAAGCAAACAAGCTTCTAATATTGGACGCAGAGATTATTTATCGAACACTGCTGCTGATTATTAATGTAGTTTCAGTACAGTAGCACTGCAGATGCACTATCTTATCTACAGCATTTATGATT] consensusID : consensus_7558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [GCNTAGCAGAATNGCCCCGAGGTTTTGCNAGGGGCACACATCATGGTTGCACGCCGGGTCNACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGGCGTAAAATCTGCGTTTAGTANAAACCAGTTAACAATCAACGTTGGACCGTGCGGGGGTGCCCGCGTTCAATGAACGTTAACCTCAAGACGTTGGGAATACGGTAAAGCAGGCAGGCAACAAGTTCGTGGTATTCTGGTTCACGAAGGTTGTTCTGCAGGAAAACACNACCAACCTCCCAG] [+] EMBL AL693912 [GCNTAGCAGAATNGCCCCGAGGTTTTGCNAGGGGCACACATCATGGTTGCACGCCGGGTCNACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGGCGTAAAATCTGCGTTTAGTANAAACCAGTTAACAATCAACGTTGGACCGTGCGGGGGTGCCCGCGTTCAATGAACGTTAACCTCAAGACGTTGGGAATACGGTAAAGCAGGCAGGCAACAAGTTCGTGGTATTCTGGTTCACGAAGGTTGTTCTGCAGGAAAACACNACCAACCTCCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7558#0 CCGCCCACGCGTCCGATAGAAGAGATTCTCAAAAAAGCGAAGATGAGGAAGACAATTCGT 60 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 TTGTTCTTTTACTGACACATAAGGAACAAACGAAAAAAACAACAGCTGCTCAAGTTGGGT 120 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 CGTATCGTTCAATTGACTGCCGAAGCATCTACGGTTGGAAAATCATCCAGTGAAAATGAG 180 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 CACGAGGAAGAAAGCACAGAAGAGTCATGGGGAAGAAAATTTAATATCAGCTTGTTGGAT 240 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 CAACACACTGAACTTAAAAAGATAGCAGAAGCTAAGAAAATTAGCGCAGTAGAAAAACAA 300 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 TTGAAAGAGGAGGAGAAAATCCTCGAAAGTGTCGCTGAAAAAAAAGCACTCATGGGTGTT 360 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 GCTGAGTTGGCCAAGGGAATACAGTATGAAGATCCTATCAAAACCAGCTGGACGCCTCCA 420 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 AGATATATCTTATCCAAACCGGAATCCCGTCACGAGAAAATTCGCGAAAAGCTCCGTATA 480 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 CTGACGGAAGGAGAAAATGTACCACCGCCATTGCGTACGTTTCGTGAAATGAAGCTCCCA 540 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 AAAGCCGTGTTAGCAGCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTG 600 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 CAAGGTATACCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGGCTCG 660 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 GGTAAAACGTTGGTTTTTGTTTTACCAATCATTATGTTCTGTTTAGAGCAAGAATTACGG 720 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 CTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTA 780 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 GCGAAACAAACACATGACATAATTCAGTACTATTGTCGCCATCTTCAGGAAGCTGGTATG 840 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 CCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATC 900 consensus_7558#1 -----------------------------------------GCNTAGCAGAATNGCCCCG 19 * * ** ** consensus_7558#0 A--TTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGG 958 consensus_7558#1 AGGTTTTGCNAGGGGCACACATCATGGTTGC-ACGCCGGGTCNACTAATGGATATGTTGG 78 * ** ** ********************* ********** ***************** consensus_7558#0 ATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAA 1018 consensus_7558#1 ATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAA 138 ************************************************************ consensus_7558#0 TGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAAC 1078 consensus_7558#1 TGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAAC 198 ************************************************************ consensus_7558#0 GACAAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGCT---AAAT 1135 consensus_7558#1 GACAA-CTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGGCGTAAAAT 257 ***** ********************************************* **** consensus_7558#0 CTGC-TTTAGTAAAA-CCAGTTA-CAATCAACGTTGGAC-GTGCGGGTG---CCGC-TTC 1187 consensus_7558#1 CTGCGTTTAGTANAAACCAGTTAACAATCAACGTTGGACCGTGCGGGGGTGCCCGCGTTC 317 **** ******* ** ******* *************** ******* * **** *** consensus_7558#0 AATGAACGTAA--CTCAAGACGT--GGAATACG-TAAAGCAGG-AGGCAAAAGTTGTGTA 1241 consensus_7558#1 AATGAACGTTAACCTCAAGACGTTGGGAATACGGTAAAGCAGGCAGGCAACAAGTTCGTG 377 ********* * ********** ******** ********* ****** * * ** consensus_7558#0 TTTGTTAGAGTGTTTGCAGAAAACACCACCTCCAG-TACTGATATTTGCTGAGAAAAAGC 1300 consensus_7558#1 GT-ATTCTGGTTCACGAAGGTTGTTCTGCAGGAAAACACNACCAACCTCCCAG------- 429 * ** ** * ** * * * ** * * ** consensus_7558#0 AAGATGTCTACGGAATTCATGAATATTTATTAATTAAAGGGGTAGAAGCAGTAGCTATCC 1360 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 ACGGAGGAAAAGATCAAGAAGAGCGATATCGGTCGGTCGAGTCATTTAGAAATCAAGAGA 1420 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 AGGACGTGCTAGTTGCCACTGACGTCGCATCTAAAGGTTTGGATTTTCCGGATGTGCAGC 1480 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 ATGTAATTAATTATGATATGCCAGACGATATCGAAAACTACGTACATCGAATTGGTCGTA 1540 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 CTGGTCGATCTGGATCAAAAGGTTTAGCGACAACATTTATCAATAAGGCGACAGAGCAGT 1600 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 TTGTACTATTGGATTTGAAACATCTTTTGATTGAAGCTCAACAAAAAGTTCCTCCGTTCT 1660 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 TGGGTGAACTATGCTCGGAAACAGAGAAATACGCAGATCTCGGTGATGGCTGTAGTTATT 1720 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 GTGGTGGTTTAGGTCACCGCATCACGGAATGTCCTAAACTTGAAGCCGTGCAAAGCAAAC 1780 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 AAGCTTCTAATATTGGACGCAGAGATTATTTATCGAACACTGCTGCTGATTATTAATGTA 1840 consensus_7558#1 ------------------------------------------------------------ consensus_7558#0 GTTTCAGTACAGTAGCACTGCAGATGCACTATCTTATCTACAGCATTTATGATT 1894 consensus_7558#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||