These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 891 fasta sequence [CCCGTGCAGTTCGCTTTTCCAGCTGCTTGCGCGAGAAAACATACGAAAAAGTGTCGATCTTTCTCTTTGTAATCGTCGACGAGTGCAGTCGCGTCTGGTGCAATGGCGTCTAAAGTGTCCCGTGACATTCTCTACGAATGCGTTGCCGAAGTGTTGAAGGGCGCTGAAACGAAGCGCCGCCGCTTCCTGGAGACGGTGGAACTCCAGATCGGTCTGAAGAACTACGATCCCCAGAAGGACAAGCGTTTCTCCGGCACCGTCAAGCTGAAGTATATCCCGCGCCCGAAGATGCAGGTGTGCGTGCTCGGTGACCAGCAGCATTGCGATGAGGCGAAGGCCAACGACATCCCGTTCATGGATGCCGAGGCGCTGAAGAAGCTGAACAAGAACAAGAAGCTGGTGAAGAAGCTGGCGAAGAAGTACGACGCCTTCCTGGCCTCCGAGTCGCTGTTCAAGCAGATCCCGCGTCTGCTCGGTCCCGGTCTGAACAAGGCCGGCAAGTTCCCGGGTCTGCTCGGCCACGGCGAATCGATGGTGCAGAAGATCGACGAGGTGAAGGCCACCATCAAGTTCCAGATGAAGAAGGTGCTGTGCCTGTCGGTCGCGGTCGGTCACGTCAAGATGTCGCCCGACGAGCTGGCCCAGAACGTGCATCTGGCCATCAACTTCCTGGTGTCGCTGCTGAAGAAGCACTGGCAGAACGTCCGCTCGCTCCACATCAAATCGTCCATGGGTGCCGCCCAGCGACTGTACTAAGGTGTGTGGGTGTGTGGTGGGTAATGCGTTTATTTGCATTATCTGAGGCAATTTAACTTGTGAAATACAAATTTGTTCTCAAATGGAAAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCTTTGTTGTG] [+] EMBL CNS09NVX [CCCGTGCAGTTCGCTTTTCCAGCTGCTTGCGCGAGAAAACATACGAAAAAGTGTCGATCTTTCTCTTTGTAATCGTCGACGAGTGCAGTCGCGTCTGGTGCAATGGCGTCTAAAGTGTCCCGTGACATTCTCTACGAATGCGTTGCCGAAGTGTTGAAGGGCGCTGAAACGAAGCGCCGCCGCTTCCTGGAGACGGTGGAACTCCAGATCGGTCTGAAGAACTACGATCCCCAGAAGGACAAGCGTTTCTCCGGCACCGTCAAGCTGAAGTATATCCCGCGCCCGAAGATGCAGGTGTGCGTGCTCGGTGACCAGCAGCATTGCGATGAGGCGAAGGCCAACGACATCCCGTTCATGGATGCCGAGGCGCTGAAGAAGCTGAACAAGAACAAGAAGCTGGTGAAGAAGCTGGCGAAGAAGTACGACGCCTTCCTGGCCTCCGAGTCGCTGATCAAGCAGATCCCGCGTCTGCTCGGTCCCGGTCTGAACAAGGCCGGCAAGTTCCCGGGTCTGCTCGGCCACGGCGAATCGATGGTGCAGAAGATCGACGAGGTGAAGGCCACCATCAAGTTCCAGATGAAGAAGGTGCTGTGCCTGTCGGTCGCGGTCGGTCACGTCAAGATGTCGCCCGACGAGCTGGCCCAGAACGTGCATCTTGCCATCAACTTCCTGGTGTCGCTGCTGAAGAAGCACTGGCAGAACGTCCGCTCGCTCCACATCAAATCGTCCATGGGTGCCGCCCAGCGACTGTACTAAGGTGTGTGGGTGTGTGGTGGGTAATGCGTTTATTTGCATTATCTGAGGCAATTTAACTTGTGAAATACAAATTTGTTCTCAAATGGAA ] [+] EMBL CNS08P4D [ ccGTAATCGTCGACGAGTGCAGTCGCGTCTGGTGCAATGGCGTCTAAAGTGTCCCGTGACATTCTCTACGAATGCGTCGCCGAAGTGTTGAAGGGCGCTGAAACGAAGCGCCGCCGCTTCCTGGAGACGGTGGAACTCCAGATCGGTCTGAAGAACTACGATCCCCAGAAGGACAAGCGTTTCTCCGGCACCGTCAAGCTGAAGTACATCCCGCGCCCGAAGATGCAGGTGTGTGTGCTCGGTGATCAGCAGCATTGCGATGAGGCGAAGGCCAACGACATCCCGTTCATGGATGCCGAGGCGCTGAAGAAGCTGAACAAGAACAAGAAGCTGGTGAAGAAGCTGGCGAAGAAGTACGACGCCTTCCTGGCCTCCGAGTCGCTGTTTAAGCAGATCCCGCGTCTGCTCGGTCCCGGTCTGAACAAGGCCGGCAAGTTCCCGGGTCTGCTCGGCCACGGCGAATCGATGGTGCAGAAGATCGACGAGGTGAAGGCCACCATCAAGTTCCAGATGAAGAAGGTGCTGTGCCTGTCGGTCGCGGTCGGTCACGTCAAGATGTCGCCCGACGAGCTGGCCCAGAGCGTGCATCTGGCCATCAACTTCCTGGTGTCGCTGCTGAAGAAGCACTGGCAGAACGTCCGCTCGCTCCACATCAAATCGTCCATGGGTGCCGCCCAGCGACTGTACTAAGGTGTGTGGGTGTGTGGTGGGTAATGCGTTTATTTGCATTATCTGAGGCAATTTAACTTGTGAAATACATATTTGTTCTCAAAAGGACAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCTTTGTTGTG] [-] EMBL CNS08V4R [ AAGAACAAAAAGCTGGTGAAGAAGCTGGCGAAGAAGTACGACGCCTTCCTGGCCTCCGAGTCGCTGTTAAAGCAGTTCCCGCGTCTGTTCGGTCCCGGTCTGAAAAAGGCCGGCAAGTTCCCGGGTCTGCTCGGCCACGGCGAATCGACGGTGCAGAAGATCGACGAGGTGAAGGCCCCCATCAAGTTCCAGATGAAGAAGGTGCTGTGCCTGTCGGTCGCGGTGGGTCACGTCAAGTTGTCCCCCGACGGGCTGGCCCAGAACGTGCTTTTGGCCATCAACTTCCTGGTGTCGCTGCTGAAGAA ] consensusID : consensus_7560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 773 fasta sequence [CCGGCCGCGGTGGAAGGTCCGATTCGCGCAACGACACGACGCATACTTGGTGCGGATTTGTGTGCGGATACGTACAGCGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAA-----TTCTAACCATACGAAGTGGTGGCAACGGGGAACGAAACGTGCCGTAACCGACACAACATTTGTAAAGAAAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACCGGGCTGGCGGCTGCTGGAATACATTGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTAAGGGTGGAGGGAAACCTGCGTCTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCCAGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAATAGAAATACCCAACACGAAACAAACAAGAAACGAAACGAGC-AAAAAAAAAACGATACGTTTCCATATTCCCCGTATACCAATAAACGACGCGACCGCGACCTACAATCATGGCCAACATGCACGAGGACGAAATGAAGCACTGCTACGAGAACCTGATCGTGGTCGACGTCGGTGCGAACCTCACCAACAAGAAGTACATCCGTGATCTGGATTCGGTGATACAGCGCGCAAAGGATTCCGGCGTACAAAAGATCATGGTCCCCGGGACGTCGGTAAAATCGAGCAAGGAAGCACTACGGCTAACGCGCATCTACCCCGGCATCATCTACTCGACCGCCGGCATACACCCGCACGATTCGAAATCGATCATC] [+] EMBL BM629749 [CCGGCCGCGGTGGAAGGTCCGATTCGCGCAACGACACGACGCATACTTGGTGCGGATTTGTGTGCGGATACGTACAGCGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAA TTCTAACCATACGAAGTGGTGGCAACGGGGAACGAAACGTGCCGTAACCGACACAACATTTGTAAAGAAAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACCGGGCTGGCGGCTGCTGGAATACATTGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTAAGGGTGGAGGGAAACCTGCGTCTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCCAGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAATAGAAATACCCAACACGAAACAAACAAGAAACGAAACGAGC AAAAAAAAAACGATACGTTTCCATATTCCCCGTATACCAATAAACGACGCGACCGCGACCTACAATCATGGCCAACATGCACGAGGACGAAATGAAGCACTGCTACGAGAACCTGATCGTGGTCGACGTCGGTGCGAACCTCACCAACAA ] [+] EMBL BM650144 [ ccGGTCCGATTCGCGCAACGACACGACGCATACTTGGTGCGGATTTGTGTGCGGATACGTACAGCGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAA TTCTAACCATACGGAGTAGTGGCAACGGGGAACGAAACGTGCTGTAACCGACACAACATTTGTAAAGAAAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACCGGGCTGGCGGCTGCTGGAATACATTGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTAAGGGTGGAGGGAAACCTGCGTCTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCCAGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAGTAGAAACCCCCAACACGAAACAAACAAGAAACGAAACGAGCAAAAAAAAAAACGATACGGTTCCACATTCCCCGTATACCAATAAACGACGCGACCGCGACCTACAATCATGGCCAACATGCACGAGGACGAAATGAAGCACTGCTACGAGAACCTGATCGTGGTCGACGTCGGTGCGAACCTCACCAACAAGAAGTACATCCGTGATCTGGATTCGGTGATACAGCGCGCAAAGGATTCCGGCGTACAAAAGATCATGGTCCCCGGGACGTCGGTAAAATCGAGCAAGGAAGCACTACGGCTAACGCGCATCTAC ] [+] EMBL BM640015 [ ccgGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAAGTACGTTCTAACCATACGAAGTGGTGGCAACGGGGAACGAAACGTGCCGTAACCGACACAACATTTGTAAAGAAAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACCGGGCTGGCGGCTGCTGGAATACATTGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTAAGGGTGGAGGGAAACCTGCGTCTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCCAGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAATAGAAATACCCAACACGAAACAAACAAGAAACGAAACGAGC AAAAAAAAAACGATACGTTTCCATATTCCCCGTATACCAATAAACGACGCGACCGCGACCTACAATCATGGCCAACATGCACGAGGACGAAATGAAGCACTGCTACGAGAACCTGATCGTGGTCGACGTCGGTGCGAACCTCACCAACAAGAAGTACATCCGTGATCTGGATTCGGTGATACAGCGCGCAAAGGATTCCGGCGTACAAAAGATCATGGTCCCCGGGACGTCGGTAAAATCGAGCAAGGAAGCACTACGGCTAACGCGCATCTACCCCGGCATCATCTACTCGACCGCCGGCATACACCCGCACGATTCGAAATCGATCATC] consensusID : consensus_7560#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GGCAAGAATTCNGCACGATGGAGCACGAGAAGAACTCGGACTTCTACTCGCACAACACGGTGCGCGGTTGTTCGTACTTCTACAGCTACAAGGCGTGCTGTGATTTCCTGCAGAACAATAAGCTGCTCTCCATTATCCGGGCGCACGAGGCGCAGGACGCCGGCTACCGCATGTACCGGAAGAGCTCGACCACCGGCTTCCCCTCGCTGATCACCATCTTCTCCGCGCCGAACTATCTCGACGTCTACAACAACAAGGCGGCGGTGCTCGAGTACGAGAACAACGTCATGAACATCCGGCAGTTCAACTGCTCGNNCCNACGCCGTACTGGCTTCCGGAACTTCAGTGGACNGTCGTTCAGCGTGGTCAGCATGCCGTGNCGTCGGNGAGAAGGGTAGACCGAGG] [+] EMBL BX468190 [GGCAAGAATTCNGCACGATGGAGCACGAGAAGAACTCGGACTTCTACTCGCACAACACGGTGCGCGGTTGTTCGTACTTCTACAGCTACAAGGCGTGCTGTGATTTCCTGCAGAACAATAAGCTGCTCTCCATTATCCGGGCGCACGAGGCGCAGGACGCCGGCTACCGCATGTACCGGAAGAGCTCGACCACCGGCTTCCCCTCGCTGATCACCATCTTCTCCGCGCCGAACTATCTCGACGTCTACAACAACAAGGCGGCGGTGCTCGAGTACGAGAACAACGTCATGAACATCCGGCAGTTCAACTGCTCGNNCCNACGCCGTACTGGCTTCCGGAACTTCAGTGGACNGTCGTTCAGCGTGGTCAGCATGCCGTGNCGTCGGNGAGAAGGGTAGACCGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7560#0 CCCGTGCAGTTCGCTTTTCCAGCTGCTTGCGCGAGAAAACATACGAAAAAGTGTCGATCT 60 consensus_7560#1 -------------------------------------------CCGGCCGCGGTGGAAGG 17 consensus_7560#2 ------------------------------------------------------------ consensus_7560#0 TTCTCTTTGTAATCGTCGACGAGTGCAGTCGCGTCTGGTGCAATGGCGTCTAAAGTGTCC 120 consensus_7560#1 TCCGATTCGCG-----CAACGACACGACGCATACTTGGTGCGGATTTGTGTGCGGATACG 72 consensus_7560#2 -------------------------GGCAAGAATTCNGCACGATGGAGCACGAGAAGAAC 35 * * * consensus_7560#0 CGTGACATTCTCTACGAAT-GCGTTGCCGAAGTGTTGAAGGGCGCTGAAACGAAGCGCCG 179 consensus_7560#1 TACAGCGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAATTCTAACCATA 132 consensus_7560#2 TCGGAC-TTCTACTCGCACAACAC----GGTGCGCGGTTGTTCGTACTTCTACAGCTACA 90 * * * * * * * * * consensus_7560#0 CCGCTTCCTGGAGACGGTGGAACTCCAGATCGGTCTGAAGAACTACGATCCCCAGAAGGA 239 consensus_7560#1 CGAAGTGGTGGCAACGGGGAA---CGAAACGTGCCGTAACCGACACAACATTTGTAAAGA 189 consensus_7560#2 AGGCGTGCTGTGATTTCCTG-----CAGAACAATAAGCTGCTCTCCATTATCCGGGCGCA 145 * ** * * * * consensus_7560#0 CAAGCGTTTCTCCGGCACCGTCAAGCTGAAGTATATCCCGCGCCCGAAGATGCAGGTGTG 299 consensus_7560#1 AAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACC-GGGCTGGCGGCTGCTGGAATA 248 consensus_7560#2 CGAGGCGC---AGGACGCCGGCTACCGCATGTACCGGAAGAGCTCG--ACCACCGGCTTC 200 ** * *** * * ** * * ** * consensus_7560#0 CGTGCTCGGTGAC-CAGCAGCATTGCGATGAGGCGAAGGCCAA--CGAC-ATCCCGTTCA 355 consensus_7560#1 CAT--TGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTA 306 consensus_7560#2 CCC--TCGCTGAT-CACCATCTTCTC--CGCGCCGAA--CTATCTCGAC-GTCTACAACA 252 * * *** * * * * * * **** * * consensus_7560#0 TGGATGCCGAGGCGCTGAAGAAGCTGAACAAGAACAAGAAGCTGGTGAAGAAGC-TGGCG 414 consensus_7560#1 AGGGTGGAGGGAAACCTGCGT--CTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCC 364 consensus_7560#2 ACAAGGCGGCGGTGCTCGAGTACGAGAAC---AACGTCATGAACATCCGGCAGTTCAACT 309 * * * * * * *** * ** * consensus_7560#0 AAGAAGTACGACGCCTTCCTGGC-CTCCGAGTCGCTGTTCAAGCAG--ATCCCGCGTCTG 471 consensus_7560#1 AGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAATAGAAATACCCAACACGAAACAA 424 consensus_7560#2 GCTCGNNCCNACGCCGTACTGGCTTCCGGAACTTCAGTGGACNGTCGTTCAGCGTGGTCA 369 * * * * * * * * * ** consensus_7560#0 CTCGGTCCCGGTCTGAACAAGGC-----CGGCAAGTTCCCGGGTCTGCTCGGCCACGGCG 526 consensus_7560#1 ACAAGAAACGAAACGAGCAAAAAAAAAACGATACGTTTCCATATTC-CCCGTATACCAAT 483 consensus_7560#2 GCATGCCGTGNCGTCGGNGAGAA-----GGGTAGACCGAGG------------------- 405 * * * * * consensus_7560#0 AATCGATGGTGCAGAAGATCGACGAGGTGAAGGCCACCAT---CAAGTTCCAGATGAAGA 583 consensus_7560#1 AAACGACGCGACCGC-GACCTACAA--TCATGGCCAACATGCACGAGGACGAAATGAAGC 540 consensus_7560#2 ------------------------------------------------------------ consensus_7560#0 AGGTGCTGTGCCTGTC-GGTCGCGGTCGGTCACGTCAAGATGTCGCCCGACGAGCTGGCC 642 consensus_7560#1 AC-TGCTACGAGAACCTGATCGTGGTCG---ACGTCGGTGCGAACCTCACCAA------- 589 consensus_7560#2 ------------------------------------------------------------ consensus_7560#0 CAGAACGTGCATCTGGCCATCAACTTCCTGGTGTCGCTGCTGAAGAAGCACTGGCAGAAC 702 consensus_7560#1 CAAGAAGTACATCCG--------TGATCTGGATTCGGTGATAC---AGCGCGCAAAGGAT 638 consensus_7560#2 ------------------------------------------------------------ consensus_7560#0 GTCCGCTCGCTCCACATCAAATCGTCCATGGGTGCCGCCCAGCGACTGTACTAAGGTGTG 762 consensus_7560#1 TCCGGCGTACAAAAGATCA--TGGTCCCCGGG---------ACGTCGGTAAAATCGAGCA 687 consensus_7560#2 ------------------------------------------------------------ consensus_7560#0 TGGGTGTGTGGTGGGTAATGCGTTTATTTGCATTATCTGAGGCAATTTAACTTGTGAAAT 822 consensus_7560#1 AGGAAGCACTACGGCTAACGCG--CATCTACCCCGGCATCATCTACTCGACCGCCGGCAT 745 consensus_7560#2 ------------------------------------------------------------ consensus_7560#0 ACAA--ATTTGTTCTCAAATGGAAAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAGGGC 880 consensus_7560#1 ACACCCGCACGATTCGAAATCGATCATC-------------------------------- 773 consensus_7560#2 ------------------------------------------------------------ consensus_7560#0 CCTTTGTTGTG 891 consensus_7560#1 ----------- consensus_7560#2 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||