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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 822 fasta sequence
[CCGGTGATGTGGAGGAGGGGAGGGGTAGTGTGTGGGTGGTAACTAGAGTTACAGAGGGCCGCCGGCCCCAGACCGGTCGGTATTTTTCTCTGCTCGGCGGGCGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAATAGCGCCACGGACAAACAGTAGCAGCAGTAACATTTGCAAATACAGCCCCCTTTATGCTTAGGGAAAATGAATAAAACAAAAAAGCAACCATATAGCAACACACTCGCGCACTCATTTGATGTTTTGGAAATTATTTGGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGAGCAAACAAACCCAAACCACTCGCACTAAAAATCATCCAAACGACGCCATACGAGATGAGCATAAGCTCCTGGGAATGATGTTAAATCTAACGGGCACGTGGGGCAGCGCAATGGTTGATTCGCGTGCGCCAAAAGGAAAGCTTAACCAAACCACAAAAAAAAAACAAATAATGAATGATGATGCTAATGCTAATGAATGAATGGTGGAATGAATGAAAAGCAATCTAATGTGCTAATTTAATATCGTTTCGATCGAGGAAACGAAGGATTTACACGAATCTGGGTAGAAGCCAGATCACTCTCCTTGCTAAATCAGGATCAAACAACATGTGAAGCAAACGAATCCTCTCTGCATTCTCGTTGAGCAAGCAATCTTGATGAAAAAGTGCGAACTTTCTTTTACA----A---AAAAACGTTTCTTTCCAACCGGTTCCTAACGCTCAATA-GTTGTTAGGCAGGCAGGCGCGAGCACACCGCGACGCTTAATGATGTTTTACCGAGTTAAACCC]
[+] EMBL BM631040 [CCGGTGATGTGGAGGAGGGGAGGGGTAGTGTGTGGGTGGTAACTAGAGTTACAGAGGGCCGCCGGCCCCAGACCGGTCGGTATTTTTCTCTGCTCGGCGGGCGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAATAGCGCCACGGACAAACAGTAGCAGCAGTAACATTTGCAAATACAGCCCCCTTTATGCTTAGGGAAAATGAATAAAACAAAAAAGCAACCATATAGCAACACACTCGCGCACTCATTTGATGTTTTGGAAATTATTTGGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGAGCAAACAAACCCAAACCACTCGCACTAAAAATCATCCAAACGACGCCATACGAGATGAGCATAAGCTCCTGGGAATGATGTTAAATCTAACGGGCACGTGGGGCAGCGCAATGGTTGATTCGCGTGCGCCAAAAGGAAAGCTTAACCAAACCACAAAAAAAAAACAAATAATGAATGATGATGCTAATGCTAATGAATGAATGGTGGAATGAATGAAAAGCAATCTAATGTGCTAATTTAATATCGTTTCGATCGAGGAAACGAAGGATTTACACGAATCTGGGTAGAAGCCAGATCACTCTCCTTGCTAAATCAGGATCAAACAACATGTGAAGCAAACGAATCCTCTCTGCATTCTCGTTGAGCAAGCAATCTT ]
[+] EMBL BM585093 [ CCGCGGACGCGTGGGAGCAGCAGTAACATTTGCAAATACAGCCCCCTTTATGCTTAGGGAAAATGAATAAAACAAAAAAGCAACCATATAGCAACACACTCGCGCACTCATTTGATGTTTTGGAAATTATTTGGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGAGCAAACAAACCCAAACCACTCGCACTAAAAATCATCCAAACGACGCCATACGAGATGAGCATAAGCTCCTGGGAATGATGTTAAATCTAACGGGCACGTGGGGCAGCGCAATGGTTGATTCGCGTGCGCCAAAAGGAAAGCTTAACCAAACCACAAAAAAAAAACAAATAATGAATGATGATGCTAATGCTAATGAATGAATGGTGGAATGAATGAAAAGCAATCTAATGTGCTAATTTAATATCGTTTCGATCGAGGAAACGAAGGATTTACACGAATCTGGGTAGAAGCCAGATCACTCTCCTTGCTAAATCAGGATCAAACAACATGTGAAGCAAACGAATCCTCTCTGCATTCTCGTTGAGCAAGCAATCTTGATGAAAAAGTGCGAACTTTCTTTTACA AAACAAAAACGTTTCTTTCCAACCGGTTCCTAACGCTCAATA GTTGTTAGGCAGGCAGGCGCGAGCACACCGCGACGCTTAATG ]
[-] EMBL BM618137 [ GGAATGAATGAAAAGCAATCTAATGCACTAATTTAATATCGTTTCGATCGATGAAACGAAGGATTTACACGAATCTGGGTAGAAGCCAGACCACTCTCCTTGCTAAATCAGGATCAAACAACATGTAAAGCAAACGAATCCTCTCTGCATTCTCGTTGAGCAAGCAATCTTGATGAAAAAGTGCGAACTTTCTTTTACAAAACA AAAAACGTTTCTTTCCAACCGGTTCCTAACGCTCAATAGGTGGTTAGGCAGGCAGGCGCGAGCACACCGCGACGCTTAATGATGTTTTACCGAGTTAAACCC]
[+] EMBL BX616840 [ CGTTTCGAACGAGGAAATGAAGGATTTACACGAATCTGGGTAGAAGCCATATCACCCCCCTTGCTAAATCAGGATCAAACAACATGTGAAGCAAACGAAACCTCTCTGCATTCTCGTTGAGCAAGCAATCTTGATGAAAAAGTGCGAACTTTCTTTTACA A AAAAACATTTCTTTCCAACCGGTTCCTAACGTTC ]
consensusID : consensus_7566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[CCGGCCGCCGGACCCAGACCGGTCGGTTTTTTTTCTCTGCTCGGCGGGCGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAGTAGCGCCACGGACAAACAGTAGCAGCAGTAACATTTGCAAATACAGCCCCCTTTATGCTTAGGGAAAATGAATAAAACAAAACAAAAGCAACCATATAGCAACACACTCGCACACTCATTTGATGTTTTGGAAATTATTTGGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGAGAGAGCAAACAAACCCAAACCAATCGCACTAAAAATCATCCAAACGACGCCATACGAGATGAGCATAAGCTACTGGGAATGATGTTAAATCTAACGGGCACGTGGCGTAGCGCAATGGTTGATTTGCGCGCGCCAAAAGGAAAGCTTAACCAAACCACACAAATAATGAATGATGATGCTAATGCTAATGAATGAATGGTGGAATGAATGAAAAGCAATCTAATGTGCTAATTTAATATCGTTTCGAACGAGGAAACGAAGGATTTACACGAATCTGGGTAGAAGCCCGTCACTCTCCGTGCTAAATCAGGATCAAAATCATAACCTACAGTCAAACACACACACACAACATGTGAAGCAAACGAATCCTCTCCGCATTCTCGTTGAGCAAGCAATCTTGATGAAAAAGTGCGAACTTTCTTTTACAAAACAAAAACGTTT]
[+] EMBL BM605390 [CCGGCCGCCGGACCCAGACCGGTCGGTTTTTTTTCTCTGCTCGGCGGGCGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAGTAGCGCCACGGACAAACAGTAGCAGCAGTAACATTTGCAAATACAGCCCCCTTTATGCTTAGGGAAAATGAATAAAACAAAACAAAAGCAACCATATAGCAACACACTCGCACACTCATTTGATGTTTTGGAAATTATTTGGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGAGAGAGCAAACAAACCCAAACCAATCGCACTAAAAATCATCCAAACGACGCCATACGAGATGAGCATAAGCTACTGGGAATGATGTTAAATCTAACGGGCACGTGGCGTAGCGCAATGGTTGATTTGCGCGCGCCAAAAGGAAAGCTTAACCAAACCACACAAATAATGAATGATGATGCTAATGCTAATGAATGAATGGTGGAATGAATGAAAAGCAATCTAATGTGCTAATTTAATATCGTTTCGAACGAGGAAACGAAGGATTTACACGAATCTGGGTAGAAGCCCGTCACTCTCCGTGCTAAATCAGGATCAAAATCATAACCTACAGTCAAACACACACACACAACATGTGAAGCAAACGAATCCTCTCCGCATTCTCGTTGAGCAAGCAATCTTGATGAAAAAGTGCGAACTTTCTTTTACAAAACAAAAACGTTT]
consensusID : consensus_7566#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[CAGCAATCCCCNAGNNTTTATGTGGGAGGAGGGGAGGGATAGTGTGTTGGTGGTTACTAGAGTTACAGAGGGCCTGCCGGCCCAGACCGGTCGGTTTTTTTTTCTCTGCTCGGCGGGCGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAGTAGCGCCACGGACAAACAGTAGCAGCAGTAACATTTGCAAATACAGCCCCTTTATGCTTAGGGAAAATGAATAAAACAAAACAAAAGCAACCATATAGCAACACACTCGCACACTCATTTGATGTTTGGAAATTATTTGGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGTCAACNAATCCAAANCACTCGCACGTAAAATCATCCAAANGACGCCATACGAGATGAGCATATGCTCCTGGGAATAGAATGTANAAAATCTAAACGGGGACGNGGAGCAGCGCACAANGGTNGNACCTANGNGTTGCGCCCAAAAAAAAAGGGAAACAGNACTANAACACCCCAAAAGACCCAACNAAACANAAAAAACACAACCANAACTAACACGACACTTGCACNGACATGGCCTAAANAGGCCTAAACATGACAATGANAACNATTGGGTAGGGNAANTTGAAATGGAACACAAGNNAGAGATCTAAAANGCCCGCCNGACAATNGCAAAAAANNACGGAAGCCCCGAACTACCANCNAN]
[+] EMBL AL692590 [CAGCAATCCCCNAGNNTTTATGTGGGAGGAGGGGAGGGATAGTGTGTTGGTGGTTACTAGAGTTACAGAGGGCCTGCCGGCCCAGACCGGTCGGTTTTTTTTTCTCTGCTCGGCGGGCGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAGTAGCGCCACGGACAAACAGTAGCAGCAGTAACATTTGCAAATACAGCCCCTTTATGCTTAGGGAAAATGAATAAAACAAAACAAAAGCAACCATATAGCAACACACTCGCACACTCATTTGATGTTTGGAAATTATTTGGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGTCAACNAATCCAAANCACTCGCACGTAAAATCATCCAAANGACGCCATACGAGATGAGCATATGCTCCTGGGAATAGAATGTANAAAATCTAAACGGGGACGNGGAGCAGCGCACAANGGTNGNACCTANGNGTTGCGCCCAAAAAAAAAGGGAAACAGNACTANAACACCCCAAAAGACCCAACNAAACANAAAAAACACAACCANAACTAACACGACACTTGCACNGACATGGCCTAAANAGGCCTAAACATGACAATGANAACNATTGGGTAGGGNAANTTGAAATGGAACACAAGNNAGAGATCTAAAANGCCCGCCNGACAATNGCAAAAAANNACGGAAGCCCCGAACTACCANCNAN]
consensusID : consensus_7566#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[GAATGAATGAAAAGCAATCTAATGCGTTTAATGTTGAATATCGTTTCGATCGATGAACACGAAGGATTTACACGAATCTGGGTAGAAGCCAGATCACTNTCCTTGCCTAAATCAGGATCAAACACATGTAAAGCAAACGAATCCTCTCTGCATTCTCGTTGAGCAAGCAATCTTGATGCAAAAAGTGCGTAACTTTCTGTTTACAAAACTCAAAACGTTTCTTTCCAACCGGTTCCTAACGCTCAATAGGTGGTTCAGGCAGGCAGGCGCGAGCACACCCGGCGACGCTAATGATGTTTTACCGAGTTAAAACCACGCTCGAGCGTAAACTTTATACATGCTTTATGGGTTTTTTGGTTTCTTCATCAGGTGTCTCCTCGATTTAAGGGTTGTTTTGTTTGTTTGGTTTTTTTTTGGGTGTAGTTCGGCATAATACCGTACCGTCCCCTACTATCCGTGGGGATGGTGCGGGGCTGTGCTGAAGTGACTGGAATGTAATATCGTATAATAATGTAACGTTTATTTGTTCTGCAGAAAAGAAAATAAAACAAATCCTACTAAAATCTAAAAAATTCCNCANAAGGGCAGCATGTGC]
[-] EMBL BX466848 [GAATGAATGAAAAGCAATCTAATGCGTTTAATGTTGAATATCGTTTCGATCGATGAACACGAAGGATTTACACGAATCTGGGTAGAAGCCAGATCACTNTCCTTGCCTAAATCAGGATCAAACACATGTAAAGCAAACGAATCCTCTCTGCATTCTCGTTGAGCAAGCAATCTTGATGCAAAAAGTGCGTAACTTTCTGTTTACAAAACTCAAAACGTTTCTTTCCAACCGGTTCCTAACGCTCAATAGGTGGTTCAGGCAGGCAGGCGCGAGCACACCCGGCGACGCTAATGATGTTTTACCGAGTTAAAACCACGCTCGAGCGTAAACTTTATACATGCTTTATGGGTTTTTTGGTTTCTTCATCAGGTGTCTCCTCGATTTAAGGGTTGTTTTGTTTGTTTGGTTTTTTTTTGGGTGTAGTTCGGCATAATACCGTACCGTCCCCTACTATCCGTGGGGATGGTGCGGGGCTGTGCTGAAGTGACTGGAATGTAATATCGTATAATAATGTAACGTTTATTTGTTCTGCAGAAAAGAAAATAAAACAAATCCTACTAAAATCTAAAAAATTCCNCANAAGGGCAGCATGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7566#1 ------------------------------------------------------------
consensus_7566#2 CAGCAATCCCCNAGNNTTTATGTGGGAGGAGGGGAGGGATAGTGTGTTGGTGGTTACTAG 60
consensus_7566#0 -------------CCGGTGATGTGG-AGGAGGGGAGGGGTAGTGTGTGGGTGGTAACTAG 46
consensus_7566#3 ------------------------------------------------------------
consensus_7566#1 --------CCGGCCGCCGGACCCAGACCGGTCGGTTTT---TTTT-CTCTGCTCGGCGGG 48
consensus_7566#2 AGTTACAGAGGGCCTGCCGGCCCAGACCGGTCGGTTTT---TTTTTCTCTGCTCGGCGGG 117
consensus_7566#0 AGTTACAGAGGGCCGCCGGCCCCAGACCGGTCGGTATT---TTT--CTCTGCTCGGCGGG 101
consensus_7566#3 ---GAATGAATGAAAAGCAATCTAATGCGTTTAATGTTGAATATCGTTTCGATCGATGAA 57
* * * ** * * ** * * * * *** *
consensus_7566#1 CGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAG-TAGCGCCACGGACAAACAGTAGCA 107
consensus_7566#2 CGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAG-TAGCGCCACGGACAAACAGTAGCA 176
consensus_7566#0 CGGGCGTCAAACACAGGTATTTAGCAGTAAAGCAA-TAGCGCCACGGACAAACAGTAGCA 160
consensus_7566#3 CACGAAGGATTTACACGAATCTGGGTAGAAGCCAGATCACTNTCCTTGCCTAAATCAGGA 117
* * * *** * ** * * ** ** * * * * * * ** *
consensus_7566#1 GCAGTAACATTT---GCAAATACAGCCCCCTTTATGCTTAGGGAAAATGAATAAAACAAA 164
consensus_7566#2 GCAGTAACATTT---GCAAATACAGCCCC-TTTATGCTTAGGGAAAATGAATAAAACAAA 232
consensus_7566#0 GCAGTAACATTT---GCAAATACAGCCCCCTTTATGCTTAGGGAAAATGAATAAAACAAA 217
consensus_7566#3 TCAAACACATGTAAAGCAAACGAATCCTC-TCTGCATTCTCGTTGAGCAAGCAATCTTGA 176
** **** * ***** * ** * * * * * * * ** *
consensus_7566#1 ACAAAAGCAACCATATAGCAACACACTCGCACA-CTCATTTGATGTTTTGGAAATTATTT 223
consensus_7566#2 ACAAAAGCAACCATATAGCAACACACTCGCACA-CTCATTTGATGTTT-GGAAATTATTT 290
consensus_7566#0 A---AAGCAACCATATAGCAACACACTCGCGCA-CTCATTTGATGTTTTGGAAATTATTT 273
consensus_7566#3 TGCAAA--AAGTGCGTAACTTTCTGTTTACAAAACTCA--AAACGTTT------CTTTCC 226
** ** ** * * * * **** * **** * *
consensus_7566#1 GGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGAGAGAGCAAACAAACCCA 283
consensus_7566#2 GGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAG------TCAACNAATCCA 344
consensus_7566#0 GGCAAATCACTACCGAGAAGCACATGTTTTCGAGAGAGAGAGAG----CAAACAAACCCA 329
consensus_7566#3 AACCGGTTCCTAACGCTCAATAGGTGGTTCAGGCAGGCAGGCG-----CGAGCACACCCG 281
* * *** ** * * ** ** * ** ** * * * **
consensus_7566#1 AACCAATCGCACTAAAAATCATCCAAACGACGCCATACGAGATGAGCATAAGCTACTGGG 343
consensus_7566#2 AANCACTCGCACGTAAAATCATCCAAANGACGCCATACGAGATGAGCATATGCTCCTGGG 404
consensus_7566#0 AACCACTCGCACTAAAAATCATCCAAACGACGCCATACGAGATGAGCATAAGCTCCTGGG 389
consensus_7566#3 G-CGACGCTAATGATGTTTTACCGAGTTAAAACCACGC---TCGAGCGTAAACT-TTATA 336
* * * * * * * * *** * **** ** ** *
consensus_7566#1 AATGA----TGTTAAATCTAA-CGGGCACGTGGCGTAGCGCAATGGTTGATTTGCGCGCG 398
consensus_7566#2 AATAGAATGTANAAAATCTAAACGGGGACGNGGAGCAGCGCA------------CAANGG 452
consensus_7566#0 AATGA----TGTTAAATCTAA-CGGGCACGTGGGGCAGCGCAATGGTTGATTCGCGTGCG 444
consensus_7566#3 CATGCTTTATGGGTTTTTTGG-TTTCTTCATCAGGTGTCTCCTCGATT------TAAGGG 389
** * * * * * * * *
consensus_7566#1 CCAAAAGGAAAGCTTAACCAAACCACACAAATAAT---------GAATGATGATGCTAAT 449
consensus_7566#2 TNGNACCTANGNGTTGCGC---CCAAAAAAAAAGG---------GAAACAGNACTANAAC 500
consensus_7566#0 CCAAAAGGAAAGCTTAACCAAACCACAAAAAAAAAACAAATAATGAATGATGATGCTAAT 504
consensus_7566#3 TTGTTTTGTTTGTTTGGTTTTTTTTTGGGTGTAGTTC-------GGCATAATACCGTACC 442
** * * * * *
consensus_7566#1 GCTAATGAATGAATGGTGGAATGAATGAAAAGCAATCTAATGTGCTAATTTAATATCGTT 509
consensus_7566#2 ACCCCAAAAGACCCAACNAAACANAAAAAACACAACCANA---ACTAACACGACACTTGC 557
consensus_7566#0 GCTAATGAATGAATGGTGGAATGAATGAAAAGCAATCTAATGTGCTAATTTAATATCGTT 564
consensus_7566#3 GTCCCCTACTATCCGTGGGGATGGTGCGGGGCTGTGCTGA---AGTGACTGGAATGTAAT 499
* * * * * * *
consensus_7566#1 TCGAACGAGGAAACGAAGGATTTACACGAATCTGGGTAGAAGCCCG-TCACTCTCCGTGC 568
consensus_7566#2 ACNGACATGGCCTAAANAGGCCTAAACATGAC--AATGANAACN-----ATTGGGTAGGG 610
consensus_7566#0 TCGATCGAGGAAACGAAGGATTTACACGAATCTGGGTAGAAGCCAGATCACTCTCCTTGC 624
consensus_7566#3 ATCG-TATAATAATGTAACGTTTATTTGTTCTGCAGAAAAGAAA-----ATAAAACAAAT 553
** *
consensus_7566#1 TAAATCAGGATCAAAATCATAACCTACAG-TCAAACACACACACACAACATGTGA----A 623
consensus_7566#2 NAANTTGAAATGGAA--CACAAGNNAGAGATCTAAAANGCCCGCCNGACAATNGC----A 664
consensus_7566#0 TAAATCAGGATCAAA----CAACATGTGAAGCAAACGAATCCTCTCTGCATTCTCGTTGA 680
consensus_7566#3 CCTACTAAAATCTAAAAAATTCCNCANAAGGGCAGCATGTGC------------------ 595
** ** * *
consensus_7566#1 GCAAACGA--------ATCCTCTCCGCATTCTCGTTGAGCAAGCAATCTTGATGAAAAAG 675
consensus_7566#2 AAAAANNAC-------GGAAGCCCCGAACTACCANCNAN--------------------- 696
consensus_7566#0 GCAAGCAATCTTGATGAAAAAGTGCGAACTTTCTTTTACAAAAAAACGTTTCTTTCCAAC 740
consensus_7566#3 ------------------------------------------------------------
consensus_7566#1 TGCGAACTTTCTTTTACAAAACAAAAACGTTT---------------------------- 707
consensus_7566#2 ------------------------------------------------------------
consensus_7566#0 CGGTTCCTAACGCTCAATAGTTGTTAGGCAGGCAGGCGCGAGCACACCGCGACGCTTAAT 800
consensus_7566#3 ------------------------------------------------------------
consensus_7566#1 ----------------------
consensus_7566#2 ----------------------
consensus_7566#0 GATGTTTTACCGAGTTAAACCC 822
consensus_7566#3 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||