These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1239 fasta sequence [GTATTTTTTTATTCTATTTTAAAAAAAAACCACTACAAAGAAAACCCCCCAAAGCCCTCACATTGAGCAACACAGAGCTTAGCTCTTGGACAGAAATTCTCGCATGACCTGGTTGACCAGCTCCGGGTTGTGCTGCTGCAGGAAGTGATCAACACCGGGCACGACACGGAACTCCAGATTCTCAAACTCCTGCTGCATCAGCGGTCCCGACTCCTTCGAGATGTACAGATCCTTCTCGCCGATCAGGTACAGCCCGGGAGCGAACGTTTTCGGCCGCGGTGGCATCTGCCGCCTCGTGAAGAAGCGGAAATTCTGGCGATAGTAGTTGATCGGGTACGTCATGCCGTGCGGTTTGGAGAACGTGTACTTGAACGCCTCGATCACGTCCGGCCCACCGTGGTGGCGGAACACCACCTCGAACAGGTGGAAGTCCATCAGACGCACGAAGAACTCCGGCAGCCAGGGCATTTGGTAGAAGAAGATGTACCAGGACATCTTGAACTGGGTTTTGCTGGTGGAGAACAGCTTCCGGGCAATCTTCTGCGAGGGTGCGTCCATCATGATGTACCGATCGACCATC-TCCATGTGTTTGGTGATGAAGTGCCATCCAATCACTGCGCCCCAGTCGTGCGCAACGAGGGTAAACTTTTGACGACCTAACTGTCGCACCAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTACTGGTACTGGGGCTTCTCGGTGTCACCGTACCCGCGCATATCCAACGCCACCACCCAGTAATCTTTGGCGAACTCCTTCAGCTGATGGCGCCACGAGAACCAAAACTCGGGAAAGCCGTGCACGAGCACCATGAGCGGTTTGCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTATCGGTGCCGTACTCGTGATTGCGCAAACATTCCGGCGGCACGGGCCGCTCCTTTGTGGCCCAAAATTTGGTGTGCGGTTTGGTGACGAGCAGCACCAGCAGACCGAACAGCACCCGGCAGCTGTAGAACAGGCACAGGGCGTACGACACCACAAACTGGATCGACTCGCGGACGTAGTACTGGATCATCGTGCCACACGAACGCACCCGGCCGGGA-TTGGGTTTGGGGACCAACTTACTTGTTCACACAAT-CGCACAAGCGGCATACGACACTTTCTGCGCGATGTGTGTGATGTACCGCGGA-CGCGCGGGCGGACGCGTGGGCGG] [+] EMBL CNS09K48 [GTATTTTTTTATTCTATTTTAAAAAAAAACCACTACAAAGAAAACCCCCCAAAGCCCTCACATTGAGCAACACAGAGCTTAGCTCTTGGACAGAAATTCTCGCATGACCTGGTTGACCAGCTCCGGGTTGTGCTGCTGCAGGAAGTGATCAACACCGGGCACGACACGGAACTCCAGATTCTCAAACTCCTGCTGCATCAGCGGTCCCGACTCCTTCGAGATGTACAGATCCTTCTCGCCGATCAGGTACAGCCCGGGAGCGAACGTTTTCGGCCGCGGTGGCATCTGCCGCCTCGTGAAGAAGCGGAAATTCTGGCGATAGTAGTTGATCGGGTACGTCATGCCGTGCGGTTTGGAGAACGTGTACTTGAACGCCTCGATCACGTCCGGCCCACCGTGGTGGCGGAACACCACCTCGAACAGGTGGAAGTCCATCAGACGCACGAAGAACTCCGGCAGCCAGGGCATTTGGTAGAAGAAGATGTACCAGGACATCTTGAACTGGGTTTTGCTGGTGGAGAACAGCTTCCGGGCAATCTTCTGCGAGGGTGCGTCCATCATGATGTACCGATCGACCATC TCCATGTGCTTGGTGATGAAGTGCCATCCAATCACTGCGCCCCAGTCGTGCGCAACGAGGGTAAACTTTTGACGACCTAACTGTCGCACCAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTACTGGTACTGGGGCTTCTCGGTGTCACCGTACCCGCGCATATCCAACGCCACCACCCAGTAATCTTTGGCGAACTCCTTCAGCTGATGGCGCCACGAGAACCAAAACTCGGGAAAGCCGTGCACGAGCACCATGAGCGGTTTGCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTATCGGTGCCGTACTCGTGATTTTGCTAACATTCCGGCGGCGCGGGCC ] [-] EMBL BX624498 [ AACTCCAGATTCTCAAACTCCTGCTGCATCAGCGGTCCCGACTCNTTCGAGATGTACAGATCNTTCTCGCCGATCAGGTACAGCCCGGGGGCGAACGTTTTCGNCCGCGGTGGCATCTGCCGCCTCGTGAAGAAGCGGAAATTCTGGCGATAGTAGTTGATCGGGTACGTCATGGCGTGCGGTTTGGAGAACGTGTACTTGAACGCCTCGATCACGTCCGGCCCACCGTGGTGGCGGAACACCACCTCGAACAGGTGGAAGTCCATCAGGCGCACGAAGAACTCCGGCAGCCAGGGCATTTGGTAGAAGAAGATGTACCAGGACATCTTGAACTGGGTTTTGCTGGTGGAGAACAGCTTCCGGGCAATCTTCTGCGAGGGTGCGTCCATCATGATGTACCGATCGACCATC TCCATGTGTTTGGTGATGAAGTGCCATCCAATCACTGCGCCCCAGTCGTGCGCAACGAGGGTAAACTTTTGACGACCTAACTGTCGCACCAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTACTGGTACTGGGGCTTCTCGGTGTCACCGTACCCGCGCATATCCAACGCCACCACCCAGTAATCTTTGGCGAACTCCTTCAGCTGATGGCGCCACGAGAACCAAAACTCGGGAAAGCCGTGCACGAGCACCATGAGCGGTTTGCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTA ] [-] EMBL CNS09K47 [ CGTTTTCGGCCGCGGTGGCATCTGCCGCCTCGTGAAGAAGCGGAAATTCTGGCGATAGTAGTTGATCGGGTACGTCATGCCGTGCGGTTTGGAGAACGTGTACTTGAACGCCTCGATCACGTCCGGCCCACCGTGGTGGCGGAACACCACCTCGAACAGGTGGAAGTCCATCAGACGCACGAAGAACTCCGGCAGCCAGGGCATTTGGTAGAAGAAGATGTACCAGGACATCTTGAACTGGGTTTTGCTGGTGGAGAACAGCTTCCGGGCAATCTTCTGCGAGGGTGCGTCCATCATGATGTACCGATCGACCATC TCCATGTGCTTGGTGATGAAGTGCCATCCAATCACTGCGCCCCAGTCGTGCGCAACGAGGGTAAACTTTTGACGACCTAACTGTCGCACCAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTACTGGTACTGGGGCTTCTCGGTGTCACCGTACCCGCGCATATCCAACGCCACCACCCAGTAATCTTTGGCGAACTCCTTCAGCTGATGGCGCCACGAGAACCAAAACTCGGGAAAGCCGTGCACGAGCACCATGAGCGGTTTGCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTATCGGTGCCGTACTCGTGATTGCGCAAACATTCCGGCGGCGCGGGCCGCTCCTTTGTGGCCCAAAATTTGGTGTGCGGTTTGGTGATGAGTAGCACCAGCAGACCGAACAGCACCCGGCAGCTGTAGAACAGACACAGGGCGTACGACACCACAAACTGGATCGACTCGCGGACGTAGTACTGGATCATCGTGCCACACGAACGCACCCGGCCGGGA TTCGGATTGGGGACCAACTTACTTGTTCACACAAT CGCACAAGCGGCATACGACACTTTCTGCGCGATGTGTGTGATGTACCG ] [-] EMBL BM619278 [ GGGCAATCTTCTGCGAGGGTGCGTCCATCATGATGTACCGATCGACCATCTTCCATGTGTTTGGTGATGAAGTGCCATCCAATCACTGCGCCCCAGTCGTGCGCAACGAGGGTAAACTTTTGACGACCTAACTGTCGCACCAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTACTGGTACTGGGGCTTCTCGGTGTCACCGTACCCGCGCATATCCAACGCCACCACCCAGTAATCTTTGGCGAACTCCTTCAGCTGATGGCGCCACGAGAACCAAAACTCGGGAAAGCCGTGCACGAGCACCATGAGCGGTTTGCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTATCGGTGCCGTACTCGTGATTGCGCAAACATTCCGGCGGCACGGGCCGCTCCTTTGTGGCCCAAAATTTGGTGTGCGGTTTGGTGACGAGCAGCACCAGCAGACCGAACAGCACCCGGCAGCTGTAGAACAGGCACAGGGCGTACGACACCACAAACTGGATCGACTCGCGGACGTAGTACTGGATCATCGTGCCACACGAACGCACCCGGCCGGGATTTGGGTTTGGGGACCAACTTACTTGTTCACACAATCCGCACAAGCGGCATACGACACTTTCTGCGCGATGTGTGTGATGTACGCCGGA CGCGTGGGCGG ] [-] EMBL BM618417 [ TGTGTTTGGTGATGAAGTGCCATCCAATCACTGCGCCCCAGTCGTGCGCAACGAGGGTAAACTTTTGACGACCTAACTGTCGCACCAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTACTGGTACTGGGGCTTCTCGGTGTCACCGTACCCGCGCATATCCAACGCCACCACCCAGTAATCTTTGGCGAACTCCTTCAGCTGATGGCGCCACGAGAACCAAAACTCGGGAAAGCCGTGCACGAGCACCATGAGCAGTTTGCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTATCGGTGCCGTACTCGTGATTGCGCAAACAGTCCGGCGGCACGGGCCGCTCCTTTGTGGCCCAAAATTTGGTGTGCGGTTTGGTGACGAGCAGCACCAGCAGACCGAACAGCACCCGGCAGCTGTAGAACAGGCACAGGGCGTACGACACCACAAACTGGATCGACTCGCGGACGTAGTACTGGATCATCGTGCCACACGAACGCACCCGGCCGGGATTTGGGTTTGGGGACCAACTTACTTGTTCACACAATCCGCACAAGCGGCATACGACACTTTCTGCGCGATGTGTGTGATGTA CGCGGACCGCGCGG ] [-] EMBL BM644733 [ CGTGCACGAGCACCATGAGCGGTTTGCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTATCGGTGCCGTACTCGTGATTGCGCAAACATTCCGGCGGCACGGGCCGCTCCTTTGTGGCCCAAAATTTGGTGTGCGGTTTGGTGACGAGCAGCACCAGCAGACCGAACAGCACCCGGCAGCTGTAGAACAGGCACAGGGCGTACGACACCACAAACTGGATCGACTCGCGGACGTAGTACTGGATCATCGTGCCACACGAACGCACCCGGCCGGGATTTGGGTTTGGGGACCAACTTACTTGTTCACACAATCCGCACAAGCGGCATACGACACTTTCTGCGCGATGTGTGTGATGTA CGCGGA C CGC GGCGGACGCGTGGGCGG] consensusID : consensus_7573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [CTACTGTCGCACAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTATCTGGTACTGGGGCTTTCGGTGTCACNGTACACCGCGCATATCCACGCACACCACCCAGTAATCTTTGGCGAACTCCTTCAGCTGATGGCGCCACGAGTAACCAAAACTCGGGAAAGCCGTGCACGAGCACCATGAGCGGTTTGTCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTATCGGTGCCGTAATCGTGAGTTGCGCAAACATTCCGCGGCACGGCCGCTCCTTTGTGGCCCAAAATTTGGTGCCGTTTTGGTGACAGACGCCAAAGGGCCCCCAAACCCAGCAGACCGAAAGCACCCGAGCTGTAGAACAGCACAGGCGTAGAACCACAANTGATGACTCGANAACCTCGGGGAATT] [-] EMBL AL932299 [CTACTGTCGCACAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTATCTGGTACTGGGGCTTTCGGTGTCACNGTACACCGCGCATATCCACGCACACCACCCAGTAATCTTTGGCGAACTCCTTCAGCTGATGGCGCCACGAGTAACCAAAACTCGGGAAAGCCGTGCACGAGCACCATGAGCGGTTTGTCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGTTCGCATTCTGGTACTTATCGGTGCCGTAATCGTGAGTTGCGCAAACATTCCGCGGCACGGCCGCTCCTTTGTGGCCCAAAATTTGGTGCCGTTTTGGTGACAGACGCCAAAGGGCCCCCAAACCCAGCAGACCGAAAGCACCCGAGCTGTAGAACAGCACAGGCGTAGAACCACAANTGATGACTCGANAACCTCGGGGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7573#0 GTATTTTTTTATTCTATTTTAAAAAAAAACCACTACAAAGAAAACCCCCCAAAGCCCTCA 60 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CATTGAGCAACACAGAGCTTAGCTCTTGGACAGAAATTCTCGCATGACCTGGTTGACCAG 120 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CTCCGGGTTGTGCTGCTGCAGGAAGTGATCAACACCGGGCACGACACGGAACTCCAGATT 180 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CTCAAACTCCTGCTGCATCAGCGGTCCCGACTCCTTCGAGATGTACAGATCCTTCTCGCC 240 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GATCAGGTACAGCCCGGGAGCGAACGTTTTCGGCCGCGGTGGCATCTGCCGCCTCGTGAA 300 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GAAGCGGAAATTCTGGCGATAGTAGTTGATCGGGTACGTCATGCCGTGCGGTTTGGAGAA 360 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CGTGTACTTGAACGCCTCGATCACGTCCGGCCCACCGTGGTGGCGGAACACCACCTCGAA 420 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CAGGTGGAAGTCCATCAGACGCACGAAGAACTCCGGCAGCCAGGGCATTTGGTAGAAGAA 480 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GATGTACCAGGACATCTTGAACTGGGTTTTGCTGGTGGAGAACAGCTTCCGGGCAATCTT 540 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 CTGCGAGGGTGCGTCCATCATGATGTACCGATCGACCATCTCCATGTGTTTGGTGATGAA 600 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 GTGCCATCCAATCACTGCGCCCCAGTCGTGCGCAACGAGGGTAAACTTTTGACGACCTAA 660 consensus_7573#1 ---------------------------------------------------------CTA 3 * consensus_7573#0 CTGTCGCACCAGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTA-CTGGT 719 consensus_7573#1 CTGTCGCAC-AGGCACCGGATGTCCTCGGTCATGTTGTCGATCCGATAGGCGTATCTGGT 62 ********* ******************************************** ***** consensus_7573#0 ACTGGGGCTTCTCGGTGTCACCGTAC-CCGCGCATATCCAACGCCACCACCCAGTAATCT 778 consensus_7573#1 ACTGGGGCTT-TCGGTGTCACNGTACACCGCGCATATCCACGCACACCACCCAGTAATCT 121 ********** ********** **** ************* **************** consensus_7573#0 TTGGCGAACTCCTTCAGCTGATGGCGCCACGAG-AACCAAAACTCGGGAAAGCCGTGCAC 837 consensus_7573#1 TTGGCGAACTCCTTCAGCTGATGGCGCCACGAGTAACCAAAACTCGGGAAAGCCGTGCAC 181 ********************************* ************************** consensus_7573#0 GAGCACCATGAGCGGTTTG-CTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGT 896 consensus_7573#1 GAGCACCATGAGCGGTTTGTCTGCGATCTCCATTCTCCACGAAATGTATCCGTATGCCGT 241 ******************* **************************************** consensus_7573#0 TCGCATTCTGGTACTTATCGGTGCCGTACTCGTGA-TTGCGCAAACATTCCGGCGGCACG 955 consensus_7573#1 TCGCATTCTGGTACTTATCGGTGCCGTAATCGTGAGTTGCGCAAACATTCCG-CGGCACG 300 **************************** ****** **************** ******* consensus_7573#0 GGCCGCTCCTTTGTGGCCCAAAATTTGGTGTGCGGTTTGGTGACGAGCAGCACCAGCAGA 1015 consensus_7573#1 G-CCGCTCCTTTGTGGCCCAAAATTTGGTGC-CGTTTTGGTGACAGAC---GCCAAAGGG 355 * **************************** ** ********* * *** * consensus_7573#0 CCGAACAGCACCCGGCAGCTGTAGAACAGGCACAGGGCGTACGACACCACAAACTGGATC 1075 consensus_7573#1 CCC--CCAAACCCAGCAGACCGAAAGCA--CCCGAGCTGTAGAACAGCACAGGC---GTA 408 ** * **** **** * * ** * * * *** *** **** * * consensus_7573#0 GACTCGCGGACGTAGTACTGGATCATCGTGCCACACGAACGCACCCGGCCGGGATTGGGT 1135 consensus_7573#1 GAACCACAANTG-ATGACTCGANAACCTCGGGGAATT----------------------- 444 ** * * * * *** ** * * * * consensus_7573#0 TTGGGGACCAACTTACTTGTTCACACAATCGCACAAGCGGCATACGACACTTTCTGCGCG 1195 consensus_7573#1 ------------------------------------------------------------ consensus_7573#0 ATGTGTGTGATGTACCGCGGACGCGCGGGCGGACGCGTGGGCGG 1239 consensus_7573#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||