These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1621 fasta sequence [CCGCGGACGCGTGGGTTTCGATTGATTGCATCGCCCTCAGAAGCGGCTGGTGCGGTTTCGAACGAGCATCCTAACAATCCCCGACTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAGAAGATCACCATCGAGAGCTATCGCAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGACGAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCGCCACCGGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTCGAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGATATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCACG-CCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCG-TGACGCCGCAGGGCCACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAGCGGATGGACGAAAGCGTCGACGGTGTGCTGACCATCCTGTGCAACCACGTGTTCCATGCCGGGTGTCTCAACAAGTGGGGCGACTCGACCTGCCCGGTGTGCCGCTGCGTGCAGACGCCCGAACTGTCCGAACAGTCCGTGTGCATGGAGTGCGAGGGTACGGAGGCACTGTGGATTTGCCTGATCTGCGGGCACATCGGGTGCGGCCGGTATCAGGGCGGTCACGCCGCCTCCCACTATCGGACGACAAATCACACGTACGCGCTGCAGCTCGGCACGAACCGCGTGTGGGACTATGCGGGCGATAATTTTGTGCACCGCTTGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGCTTTCGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCATAAGCTGCAGGAGGACCACGAGCAGGCGAAACAAAAGACGGCACAGTTGGAGGTGAAGCTGCACGCGCTTACGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAAATTAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCTGCAAGCAAATCAAGTTACCTGGCAAACTAAATTCACCACCCTGGAGAAGCAGTGCACGGAGAAGGAGCAGGAAATTGTCGAACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGAGGCACAGAACACGATTGCCGGCTCGGAGCTCAAGAGTGAGCTGGTCGACGGGACGGTAGTGCTTCCGGCGGACGCAGTTGCCGCCGCCTCATCCATTTCCGCCAGCGGCGCATTTGCCGCCG] [+] EMBL BM603958 [CCGCGGACGCGTGGGTTTCGATTGATTGCATCGCCCTCAGAAGCGGCTGGTGCGGTTTCGAACGAGCATCCCAACAATCCCCGGCTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAGAAGATCACCATCGAGAGCTATCGTAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGACGAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCGCCACCAGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTCGAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCGAAGACACTTTGTCTGATTGCTGTGCCGTCATCGCTCAACTGTCACGATATTCTCAACTTCATCGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAACCGGACACACTGTGCCACG CGGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCG TGACGCCGCAGGGCCACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAG ] [+] EMBL BM623445 [ ccgcaTTTCGATTGATTGCATCGCCCTCAGAAGCGGCTGGTGCGGTTTCGAACGAGCATCCTAACAATCCCCGACTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAGAAGATCACCATCGAGAGCTATCGCAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGACGAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCGCCACCGGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTCGAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGATATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCACG CCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCG TGACGCCGCAGGGCCACACCGAGCTACC ] [+] EMBL BM623398 [ ccgGCGGTTTCGAACGAGCATCCTAACAATCCCCGACTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAGAAGATCACCATCGAGAGCTATCGCAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGACGAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCGCCACCGGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTCGAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGATATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCACGCCCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCGTTGACGCCGCAGGGCCACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAGCGGATGGACGAAAGCGTCGACGGTGTGCTGACCA ] [+] EMBL BM644330 [ ccgATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGATATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCACG CCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCG TGACGCCGCAGGGCCACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAGCGGATGGACGAAAGCGTCGACGGTGTGCTGACCATCCTGTGCAACCACGTGTTCCATGCCGGGTGTCTCAACAAGTGGGGCGACTCGACCTGCCCGGTGTGCCGCTGCGTGCAGACGCCCGAACTGTCCGAACAGTCCGTGTGCATGGAGTGCGAGGGTACGGAGGCACTGTGGATTTGCCTGATCTGCGGGCACATCGGGTGCGGCCGGTATCAGGGCGGTCACGCCGCCTCCCA ] [+] EMBL BX615643 [ TCTGCGGCCACATCGGGTGCGGCCGGTATCAGGGCGGTCACGCCGCCTCCCACTATCGGACGACAAATCACACGTACGCGCTGCAGCTCGGCACGAACCGCGTGTGGGACTATGCGGGCGATAATTTTGTGCACCGCTTGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGCTTTCGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCATAAGCTGCAGGAGGACCACGAGCAGGCGAAACAAAAGACGGCACAGTTGGAGGTGAAGCTGCACGCGCTTACGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAAATTAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCTGCAAGCAAATCAAGTTACCTGGCAAACTAAATTCACCACCCTGGAGAAGCAGTGCACGGAGAAGGAGCAGGAAATTGTCGAACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGAGGCACAGAACACGATTGCCGGCTCGGAGCTCAAGAGTGAGCTGGTCGACGGGACGGTAGTGCTTCCGGCGGACGCAGTTG ] [+] EMBL BX615198 [ tCGACAAATCACACGTACGCGCTGCAGCTCGGCACGAACCGCGTGTGGGACTATGCGGGCGATAATTTTGTGCACCGCTTGCTGCAGAGCAAATCGGATGAAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGCTTTCGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCAGAAGCTGCAGGAGGACCACGAGCAGGCGAAACAAAAGACGGCACAGTTGGAGGTGAAGCTGCACGCGCTTACGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAAATTAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCTGCAAGCAAATCAAGTTACCTGGCAAACTAAATTCACCACCCTGGAGAAGCAGTGCACGGAGAAGGAGCAGGAAATTGTCGAACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGAGGCACAGAACACGATTGCCGGCTCGGAGCTCAAGAGTGAGCTGGTCGACGGGACGGTAGTGCTTCCGGCGGACGCAGTTGCCGCCGCCTCATCCATTTCCGCCAGCGGCGCATTTGCCGCCG] consensusID : consensus_7574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [AGGCAGAATTCGGCACGATGGGCGGGCGATAATTTTGTGCACCGCTTGGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGGTTTCGGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCAGAAGCTGCAGGAGGACCACGGAGCAGGCGAAACAAAAGACGGGACAGTTGGAGGTGAAGCTGCACGCGCTTACCGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAGAATTAAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCGTGCAAGCAAATCAAGTTACCTGGCGAAACTAGAAGTTCACCANCCTGGAGAAGCAGGTGCACGGAGAAGGAGCAAGGAANATTGTCGANACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGGAGGCACAGAACACGATTGGCCGGCTCGNGAGGCTCAAGAGTGAGCTGGTCGACAGGACGGTAGTGCTTC] [+] EMBL BX469855 [AGGCAGAATTCGGCACGATGGGCGGGCGATAATTTTGTGCACCGCTTGGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGGTTTCGGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCAGAAGCTGCAGGAGGACCACGGAGCAGGCGAAACAAAAGACGGGACAGTTGGAGGTGAAGCTGCACGCGCTTACCGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAGAATTAAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCGTGCAAGCAAATCAAGTTACCTGGCGAAACTAGAAGTTCACCANCCTGGAGAAGCAGGTGCACGGAGAAGGAGCAAGGAANATTGTCGANACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGGAGGCACAGAACACGATTGGCCGGCTCGNGAGGCTCAAGAGTGAGCTGGTCGACAGGACGGTAGTGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7574#0 CCGCGGACGCGTGGGTTTCGATTGATTGCATCGCCCTCAGAAGCGGCTGGTGCGGTTTCG 60 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 AACGAGCATCCTAACAATCCCCGACTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAG 120 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 AAGATCACCATCGAGAGCTATCGCAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGAC 180 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 GAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCG 240 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 CCACCGGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTC 300 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 GAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAG 360 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 GGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGAT 420 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 ATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGAT 480 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 GGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAG 540 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 TTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCAC 600 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 GCCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCGTGACGCCGCAGGGC 660 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 CACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAGCGGATGGACGAAAGCGTCGACGGT 720 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 GTGCTGACCATCCTGTGCAACCACGTGTTCCATGCCGGGTGTCTCAACAAGTGGGGCGAC 780 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 TCGACCTGCCCGGTGTGCCGCTGCGTGCAGACGCCCGAACTGTCCGAACAGTCCGTGTGC 840 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 ATGGAGTGCGAGGGTACGGAGGCACTGTGGATTTGCCTGATCTGCGGGCACATCGGGTGC 900 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 GGCCGGTATCAGGGCGGTCACGCCGCCTCCCACTATCGGACGACAAATCACACGTACGCG 960 consensus_7574#1 ------------------------------------------------------------ consensus_7574#0 CTGCAGCTCGGCACGAACCGCGTGTGGGACTATG--CGGGCGATAATTTTGTGCACCGCT 1018 consensus_7574#1 --------------AGGCAGAATTCGGCACGATGGGCGGGCGATAATTTTGTGCACCGCT 46 * * * ** ** *** ************************ consensus_7574#0 TG-CTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGAT 1077 consensus_7574#1 TGGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGAT 106 ** ********************************************************* consensus_7574#0 GGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCT-GACGTCGCAGCT 1136 consensus_7574#1 GGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTTGACGTCGCAGCT 166 *********************************************** ************ consensus_7574#0 CGACGCGCAGCGGGATTATTACGAGGAGCGGCTTTCG-CGCCTCGAGTCCATCATCTGTG 1195 consensus_7574#1 CGACGCGCAGCGGGATTATTACGAGGAGCGGGTTTCGGCGCCTCGAGTCCATCATCTGTG 226 ******************************* ***** ********************** consensus_7574#0 GCGAGCGGCATAAGCTGCAGGAGGACCACG-AGCAGGCGAAACAAAAGACGGCACAGTTG 1254 consensus_7574#1 GCGAGCGGCAGAAGCTGCAGGAGGACCACGGAGCAGGCGAAACAAAAGACGGGACAGTTG 286 ********** ******************* ********************* ******* consensus_7574#0 GAGGTGAAGCTGCACGCGCTTAC-GAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCA 1313 consensus_7574#1 GAGGTGAAGCTGCACGCGCTTACCGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCA 346 *********************** ************************************ consensus_7574#0 ACTAACGTCAAAATT--AGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGT 1371 consensus_7574#1 ACTAACGTCAAGAATTAAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGT 406 *********** * * ******************************************* consensus_7574#0 AAAACGC-TGCAAGCAAATCAAGTTACCTGGC-AAACTAAA--TTCACCACCCTGGAGAA 1427 consensus_7574#1 AAAACGCGTGCAAGCAAATCAAGTTACCTGGCGAAACTAGAAGTTCACCANCCTGGAGAA 466 ******* ************************ ****** * ******* ********* consensus_7574#0 GCAG-TGCACGGAGAAGGAGCAGG--AAATTGTCGAA-CTCAAGGAGCAGGTGCGCGATC 1483 consensus_7574#1 GCAGGTGCACGGAGAAGGAGCAAGGAANATTGTCGANACTCAAGGAGCAGGTGCGCGATC 526 **** ***************** * * ******** ********************** consensus_7574#0 TCATGTTCTACATGG-AGGCACAGAACACGATTG-CCGGCTCGGA--GCTCAAGAGTGAG 1539 consensus_7574#1 TCATGTTCTACATGGGAGGCACAGAACACGATTGGCCGGCTCGNGAGGCTCAAGAGTGAG 586 *************** ****************** ******** ************* consensus_7574#0 CTGGTCGACGGGACGGTAGTGCTTCCGGCGGACGCAGTTGCCGCCGCCTCATCCATTTCC 1599 consensus_7574#1 CTGGTCGACAGGACGGTAGTGCTTC----------------------------------- 611 ********* *************** consensus_7574#0 GCCAGCGGCGCATTTGCCGCCG 1621 consensus_7574#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||