These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1009 fasta sequence [CACCGNGCNGANTCGTTATGAGCTCGAGGCAGAATCGCCAGAGGTCTTAGCGCAAAAAGTGGAAATTATTGGGCGAGTAACAATGATAAAAATTAGACGAAGGGAATGAAATATTCACATTAAAATCCCAGGTTAACAACAGAGAGCCNTCTGACGTTAATGCGTCTGGACAGTAGGACACACTTCGGGTACTACTAGCAACCCACGAAGCAGAGCGACAGCCAAGATTTAANAGGGTTTTTACCCTCGGGGATACAACCGTTTGGAGCCACCCTCTTGGTGTTTAAGGGCAACNTTATTGAAGCGCCATGGCAATTCCCCCATACGGTCGGCACACTTAGTTTGGCCCTTATTTTCCCCCAAAAACCAGGTTTGATCCAGCCCCGTTGTTGCTATTCTGAGTGTCCCCCCCGGATTCCGATTCGGGTAATACCCGAGACAGACAGCGTTTCAACAGGATAGACCGGAAAACGACAACGTTTATACACACACTTAAANGATTCGCGACAAAGTCGTCNATCATAGTTCGAGACCNGACTTNGGCTTGGGTTGGTTTTNAAAACCCACGGTAGACGCATCTTCAAAGGCCTATTGGCCCAGACCTGTTTTCCCCAACCTTGGATAATCCCGGCGAATGCTNTNTAATGGTTACCAAGAGGCTTAACCACACGNTAATTCAGGCCGGTCGTAGGAGGAACACCCCAACNACCAAAAGGCCCCCAAAGGCGGGGAAAACCCAACCCCAGGCAANCTATCGGAGNGACCCGGACACAGGAAAACGAAGGGTCTTGTTGGAANAAAAANTCGCCCAACATTTNGCCAAAAGCACCAGAACGGGCGTTCACANCATGGGCGCGNACATTAAATCACACGTNGGGAAGTAAAACAAGACGTGGAAATTTNATACAGACACGGTANCCTCTNAAAANCCGAGGCACACCGAGGAACTTTCNAATCAACAGTCGAAAAGGACCCCTATTACCAGAACACTTTGCAGACTGCTGAGTTT] [+] EMBL AL696594 [CACCGNGCNGANTCGTTATGAGCTCGAGGCAGAATCGCCAGAGGTCTTAGCGCAAAAAGTGGAAATTATTGGGCGAGTAACAATGATAAAAATTAGACGAAGGGAATGAAATATTCACATTAAAATCCCAGGTTAACAACAGAGAGCCNTCTGACGTTAATGCGTCTGGACAGTAGGACACACTTCGGGTACTACTAGCAACCCACGAAGCAGAGCGACAGCCAAGATTTAANAGGGTTTTTACCCTCGGGGATACAACCGTTTGGAGCCACCCTCTTGGTGTTTAAGGGCAACNTTATTGAAGCGCCATGGCAATTCCCCCATACGGTCGGCACACTTAGTTTGGCCCTTATTTTCCCCCAAAAACCAGGTTTGATCCAGCCCCGTTGTTGCTATTCTGAGTGTCCCCCCCGGATTCCGATTCGGGTAATACCCGAGACAGACAGCGTTTCAACAGGATAGACCGGAAAACGACAACGTTTATACACACACTTAAANGATTCGCGACAAAGTCGTCNATCATAGTTCGAGACCNGACTTNGGCTTGGGTTGGTTTTNAAAACCCACGGTAGACGCATCTTCAAAGGCCTATTGGCCCAGACCTGTTTTCCCCAACCTTGGATAATCCCGGCGAATGCTNTNTAATGGTTACCAAGAGGCTTAACCACACGNTAATTCAGGCCGGTCGTAGGAGGAACACCCCAACNACCAAAAGGCCCCCAAAGGCGGGGAAAACCCAACCCCAGGCAANCTATCGGAGNGACCCGGACACAGGAAAACGAAGGGTCTTGTTGGAANAAAAANTCGCCCAACATTTNGCCAAAAGCACCAGAACGGGCGTTCACANCATGGGCGCGNACATTAAATCACACGTNGGGAAGTAAAACAAGACGTGGAAATTTNATACAGACACGGTANCCTCTNAAAANCCGAGGCACACCGAGGAACTTTCNAATCAACAGTCGAAAAGGACCCCTATTACCAGAACACTTTGCAGACTGCTGAGTTT] consensusID : consensus_7576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 931 fasta sequence [CCGATGACATAACATCAAAACATCAACAAAGGTGCTCTTGCGCAAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT-CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT-AAGA-TC-GACAGTGTATTATGTGG-CCGC-TGCTGGTG-TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCG-AGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTAACGCCGATATAGGAGCCTCGATGCGGTGGAACTTTAAACCTCAGCAAACCGAAATCAGGGTTGTTCCGGGTGAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGACCATCCGGTTGTTGGGATCAGCACCTATAATGTGATTCCATTCGAGGCTGGCGCGTACTTCAACAAAATACAGTGCTTTTGCTTCGAGGAGCAGCAGCTCAATCCACACGAAGAGGTT-GACTTGCCGGTGTTCTTCTACATCGATCCGGATTTTATAGAGGAGCCTAAGATGGAACTGGTAGACTCAATTACGCTATCGTACACA-TTCTTCGAGTCAAAGGATGGCGTGAACATACAAATGCCGGTGTATGCAAAACAGCATGGNTAAACAAGGATGTGTTAGTTTTTG-AATGATGTTAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAATNANACAAAAAGGACGGACTGT] [+] EMBL BM583816 [CCGATGACATAACATCAAAACATCAACAAAGGTGCTCTTGCGCAAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC TGCTGGTG TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCG AGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAG ] [+] EMBL BX619971 [ CTCTTGCGCAAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC T ] [+] EMBL BM619366 [ ccgCTTGCGCAAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC TGCTGGTG TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCG AGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTAACGCCGATATAGGAGCCTCGATGCGGTGGAACTTTAAACCTCAGCAAACCGAAATCAGGGTTGTTCCGGGTGAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGACCATCCGGTTGTTGGGATCAGCACCTATAATGTGATTCCATTCGAGGCTGGCGCGTACTTCAACAAAATACAGTGCTTTTGCTTCGAGGAGCAGCAGCTCAATCCACACGAAGAGGTTGGACTTGCCGGTGTTCTTCTACATCGATCC ] [+] EMBL BX621613 [ AAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC TGCTGGTG TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCG AGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTAACGCCGATATAGGAGCCTCGATGCGGTGGAACTTTAAACCTCAGCAAACCGAAATCAGGGTTGTTCCGGGTGAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGACCATCCGGTTGTTGGGATCAGCACCTATAATGTGATTCCATTCGAGGCTGGCGCGTACTTCAACAAAATACAGTGCTTTTGCTTCGAGGAGCAGCAGCTCAATCCACACGAAGAGGTT GACTTGCCGGTGTTCTTCTACATCGATCCGGATTTTATAGAGGAGCCTAAGATGGAACTGGTAGACTCAATTACGCTATCGTACACA TTCTTCGAGTCAAAGGATGGCGTGAACATACAAATGCCGGTGTATGCAAAACAGCATGGNTAAACAAGGATGTGTTAGTTTTTG AATGA ] [+] EMBL BX619940 [ GGAAATTATTGGGCNAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTGCATAAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACNAACATAGTTACGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC TGCTGGTG TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGNNTTGTCAGGCTTACAGC ] [-] EMBL BX466662 [ anGTTTCAAATAAAGATTCGGACAGTGTATTANGTGGCCCGCTTCCTGGTGCTTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGNTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCGCAGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTAACGCCGATATAGGAGCCTCGATGCGGTGGAACTTTAAACCTCAGCAAACCGAAATCAGGGTTGTTCCGGGTGAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGACCATCCGGTTGTTGGGATCAGCACCTATAATGTGATTCCATTCGAGGCTGGCGCGTACTTCAACAAAATACAGTGCTTTTGCTTCGAGGAGCAGCAGCTCAATCCACACGAAGAGGTT GACTTGCCGGTGTTCTTCTACATCGATCCGGATTTTATAGAGGACCCTAAGATGGAACTGGTAGACTCAATTACGCTATCGTACACATTTCTTCGAGTCAAAGGATGGCGTGAACATACAAATGCCGGTGTATGCAAAACAGCATGGTTAAA AAGGATGTGTTAGTTTTTGAAATGATGTTAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAATNANACAAAAAGGACGGACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7576#0 CACCGNGCNGANTCGTTATGAGCTCGAGGCAGAATCGCCAGAGGTCTTAGCGCAAAAAGT 60 consensus_7576#1 -------CCGAT--GACATAACATCAAAACATCAACAAAGGTGCTCTT-GCGCAAAAAGT 50 * ** * ** * ** * ** * * * * **** *********** consensus_7576#0 GGAAATTATTGGGCGAGTAACAATGATAAAAATTAGACGAAGGGAATGAAATATTCACAT 120 consensus_7576#1 GGAAATTATTGGGCGAGTAA-AATGATAAAAATTAGACGAAGGGAATGAAATATT-ACAT 108 ******************** ********************************** **** consensus_7576#0 TAAAATCCCAGGTTAACAACAGAGAGCCNTCTGACGTTAATGCGTCTGGACAGTAGGACA 180 consensus_7576#1 TAAAATCCAG---TAACAACAA--------CTGTAGTTAA-GAATGTTGACAA----ACA 152 ******** ******** *** ***** * * * **** *** consensus_7576#0 CACTTCGGGTACTACTAGCAACCCACGAAGCAGAGCGACAGCCAAGATTTAANAGGGTTT 240 consensus_7576#1 TAGTTCG--TACTGCCTGTAGATTACCGATCAGG------AATGTGCTTTCCAACGTTGA 204 * **** **** * * * ** * *** * *** * * * consensus_7576#0 TTACCCTCGGGGATACAACCGTTTGGAGCCACCCTCTTGGTG-TTTAAGGGCAACNTTAT 299 consensus_7576#1 TCGCCCGTGTTTAT---------CGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTA 255 * *** * ** ** ** ** * * ** **** ***** * consensus_7576#0 TGAAGCGCCATGGCAATTCCCCCATACGGTCGGCA-CACTTAGTTTGGCCCTTATTTTCC 358 consensus_7576#1 CGATGCGGAACGA-AAGTTTAAAATAAGATCGACAGTGTATTATGTGGCCGCTGCTGGTG 314 ** *** * * ** * *** * *** ** * * ***** * * consensus_7576#0 CCCAAAAACCAGGTTTGATCCA-GCCCCGTTGTTGCTATTCTGAGTGTCCCCCCCGGATT 417 consensus_7576#1 TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTT 374 ** *** ** * * * *** * * ** * * *** * ** ** consensus_7576#0 CCGATTCGGGTAATACCCGAGACAGACAGCGTTTCAACAGGATAGACCGGAAAACGACAA 477 consensus_7576#1 ACAGCTATGGCGGGACC---ACCAGCCAGGG-----ACACGATGGCGAGAAGGTTGAAAG 426 * * ** *** *** *** * *** *** * * * ** * consensus_7576#0 CGTTTATACACACACTTAAANGATTCGCGACAAAGTCGTCNATCATAGTTCGAGACCNGA 537 consensus_7576#1 C----ATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTA-ACGCCGATATAGGA 481 * ** ** * * ** * ** **** * * * *** * ** consensus_7576#0 CTTNGGCTTGGGTTGGTTTTNAAAACCCACGGTAGACGCATCTTCAAAGGCCTATTGGCC 597 consensus_7576#1 GCCTCGATGCGGTGGAACTTTAAA--CCTCAGCAAAC-CGAAATCAGGGTTGTTCCGGGT 538 * * *** * ** *** ** * * * ** * *** * * ** consensus_7576#0 CAGACC-TGTTTTCCCCAACCTTGG--ATAATCCCGGCGAATGCTNTNTAATGGTTACCA 654 consensus_7576#1 GAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGA--CCATC---CGGTTGTTG 593 * *** ** * ** ** * ** *** ** * * * **** consensus_7576#0 AGAGGCTTAACCACACGNTAATTCAGGCCGGTCGTAGGAGGAACACCCCAACNACCAAAA 714 consensus_7576#1 GGATCAGCACCTATAATGTGATTCCATTCGAGGCTGG--CGCGTACTTCAACAAAATACA 651 ** * * * * * **** ** * * * ** **** * * * consensus_7576#0 GGCCCCCAAAGGCGGGGAAAACCCAACCCCAGGCAANCTATCGGAGNGACCCG--GACAC 772 consensus_7576#1 GTGCTTTTGCTTCGAGGAGCAGC-AGCTCAATCCACACGAAGAGGTTGACTTGCCGGTGT 710 * * ** *** * * * * * * ** * * * *** * * consensus_7576#0 AGGAAAACGAAGGGTCTTGTTGGAANAAAAANTCGCCCAACATTTNGCCAAAAGCACCAG 832 consensus_7576#1 TCTTCTAC-ATCGATCCGGATTTTATAGAGGA--GCCTAAGATGGAACTGGTAG-ACTCA 766 ** * * ** * * * * * *** ** ** * ** ** consensus_7576#0 AACGGGCGTTCACAN-CATGGGCGCGNACATTAAATCACACGTNGGGAAGTAAAACAAGA 891 consensus_7576#1 ATTACGCTATCGTACACATTCTTCGAGTCAAAGGATGGCGTGAACATACAAATGCCGGTG 826 * ** ** * *** ** ** * * * * * consensus_7576#0 CGTG-GAAATTTNATACAGACACGGTANCCTCTNAAAANCCGAGGCACACCGAGGAACTT 950 consensus_7576#1 TATGCAAAACAGCATGGNTAAACAAGGATGTGTTAGTTTTTGAATGATGTTAAAAAAAAA 886 ** *** ** * ** * * * ** * * ** consensus_7576#0 TCNAATCAACAGTCGAAAAGGACCCCTATTACCAGAACACTTTGCAGACTGCTGAGTTT 1009 consensus_7576#1 AAAGGAAAAAAAAAAAAAAAAAATNANACAAAAAGGACGGACTGT-------------- 931 ** * **** * * * ** ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||