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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1061 fasta sequence
[CCGCCCACGCGTCCGGTTTCGCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCACCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTC-GGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG-GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCAGGATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCTCTTTCCTTTTGCTCCAGAAGCACGAAGGGTACGAAATGTGATACGATAGCGTGTAGTAGTGAGTTTGTTGGTAATGTTTTTTCCTCCCCTCTCCGAGACAGTGAAGCAGAATAAAATGTAGCCAAAATTAGTAAAAAATTAAATACAAAATACCGATTTGAAATATACGAGAGACTGTTACGCGAAAAAAG]
[+] EMBL BM578816 [CCGCCCACGCGTCCGGTTTCGCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCACCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTC GGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCA ]
[+] EMBL CNS09079 [ GCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCACCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTC GGCATGTTCGGTGCGGATCGGCTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGAAGAAAAAGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCA GATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGTGGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGGCAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCT ]
[-] EMBL CNS08R19 [ CGCCAACGATGACTGTGCTGAAACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTAGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAAAACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTCGGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTAACAATTGGACGTATCGCCTACCGCAGGATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAAAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAG ]
[-] EMBL CNS0907A [ ACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTGGCTGTCGAGGGGATTGTGTGCAGCGAAACGTTTTTTACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGTTATCACTTCGATACAGAACTGCTGCTCTCCGTGTTTCTC GGCATGTTCGGTGCGGATCGGCTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCAGGATTACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGGCAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCTCTTTCCTTTTGCTCCAGAAGCACGAAGGGTACGAAATGTGATACGATAGCGTGTAGTAGTGAGTTTGTTGGTAATGTTTTTTCCTCCCCTCTCCGAGACAGTGAAGCAGAATAAAATGTAGCCAAAATTAGTAAAAAATTAAATACAAAATACCGATTTGAAATATACGAGAGACTGTTACGCGAAAAAAG]
[-] EMBL CNS08Q16 [ AAAAAAAAAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGAACTGCTGCTCTCCGTGTTTCTC GGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCAGGATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCTCTTTCCTTTTGCTCCAGAAGCACGAAGGGTACGAAATGTGATACGATAGCGTGTAGTAGTGAGTTTGTTGGTAATGTTTTTTCCTCCCCTCTCCGAGACAGTGAAGCAGAATAAAATGTAGCCAAAATTAGTAAAAAATTAAATACAAAATACCGATTTGAAATATACGAGAGACTG ]
[+] EMBL CNS08R18 [ TCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCAGATTAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGTGGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATT ]
consensusID : consensus_7580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[CGATGTAAACAATAACACAAATTCCGCGTTCAGCTGTTTTCGCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCGCCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTCGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATGGGTCGGCATACATCATACC]
[+] EMBL CNS08Q15 [CGATGTAAACAATAACACAAATTCCGCGTTCAGCTGTTTTCGCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCGCCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTCGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATGGGTCGGCATACATCATACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7580#0 ---------------------CCGCCCACGCGTCCGGTTTCGCGATCGAATTTCTTTCGC 39
consensus_7580#1 CGATGTAAACAATAACACAAATTCCGCGTTCAGCTGTTTTCGCGATCGAATTTCTTTCGC 60
* * * * * ***********************
consensus_7580#0 CTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCT 99
consensus_7580#1 CTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCT 120
************************************************************
consensus_7580#0 CTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAAT 159
consensus_7580#1 CTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAAT 180
************************************************************
consensus_7580#0 CCGAACGCCGCACCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGAT 219
consensus_7580#1 CCGAACGCCGCGCCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGAT 240
*********** ************************************************
consensus_7580#0 ACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTG 279
consensus_7580#1 ACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTG 300
************************************************************
consensus_7580#0 CCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCC 339
consensus_7580#1 CCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCC 360
************************************************************
consensus_7580#0 GGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAA 399
consensus_7580#1 GGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAA 420
************************************************************
consensus_7580#0 AAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATAC 459
consensus_7580#1 AAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATAC 480
************************************************************
consensus_7580#0 AGCACTGCTGCTCTCCGTGTTTCTCGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTA 519
consensus_7580#1 AGCACTGCTGCTCTCCGTGTTTCTCGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTA 540
************************************************************
consensus_7580#0 TCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGT 579
consensus_7580#1 TCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGT 600
************************************************************
consensus_7580#0 CGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATGGGTCGGCATACATCAT 639
consensus_7580#1 CGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATGGGTCGGCATACATCAT 660
************************************************************
consensus_7580#0 ACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACC 699
consensus_7580#1 ACC--------------------------------------------------------- 663
***
consensus_7580#0 GCAGGATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGA 759
consensus_7580#1 ------------------------------------------------------------
consensus_7580#0 AAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAGAGAG 819
consensus_7580#1 ------------------------------------------------------------
consensus_7580#0 ATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCTCTTTCCTTT 879
consensus_7580#1 ------------------------------------------------------------
consensus_7580#0 TGCTCCAGAAGCACGAAGGGTACGAAATGTGATACGATAGCGTGTAGTAGTGAGTTTGTT 939
consensus_7580#1 ------------------------------------------------------------
consensus_7580#0 GGTAATGTTTTTTCCTCCCCTCTCCGAGACAGTGAAGCAGAATAAAATGTAGCCAAAATT 999
consensus_7580#1 ------------------------------------------------------------
consensus_7580#0 AGTAAAAAATTAAATACAAAATACCGATTTGAAATATACGAGAGACTGTTACGCGAAAAA 1059
consensus_7580#1 ------------------------------------------------------------
consensus_7580#0 AG 1061
consensus_7580#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||