These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1265 fasta sequence [CGTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT-TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA-TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG-GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT-GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA-GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAATCTAGAAGTTGTGA] [+] EMBL CNS08E55 [ GTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGA CTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTAC ] [+] EMBL BM629176 [ccgGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCT ] [+] EMBL BX619508 [ TAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTTGTCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGANACATTGGTGAGGAGTATCAATATCCCAAATNGGTGTTCGCATCTCACGTGCCTCACACGATNATTATTCTGGAGGATGTGAGCTCACAGGGGATNGACAATGGA ] [+] EMBL CNS08MNV [ GAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGCGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTATTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGGCAGCAC ] [-] EMBL CNS08E56 [ AAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCCTCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAATCTAGAAGTTGTGA] [-] EMBL CNS08MNW [ CAATTGCCAAGTTCCATGCGGCCTCTGTCGTACTACAAGGGAAGGGTCCTACCTTTGCGTCCAAAAAACAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTTAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAAT AATCTAGAAGTTt ] consensusID : consensus_7581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TCNAGGCAGAATCGCACGAGAATNTGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAGCGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTCACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTGGCAAGGGTTGA] [+] EMBL BX469715 [TCNAGGCAGAATCGCACGAGAATNTGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAGCGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTCACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTGGCAAGGGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7581#0 CGTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTTTCCTCGCC 60 consensus_7581#1 ---------------------------------------TCNAGGCAGAAT---CGCACG 18 ** * * * * * * consensus_7581#0 GGAGTGGTTAAATGATGATTATTTTCGGCACGTTTT-GTGTAAGATAGAATGTGATTCGA 119 consensus_7581#1 AGAATN------TGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGA 72 ** * *********************** *********************** consensus_7581#0 ACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTG 179 consensus_7581#1 ACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTG 132 ************************************************************ consensus_7581#0 CAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGA 239 consensus_7581#1 CAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGA 192 ************************************************************ consensus_7581#0 TCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATG 299 consensus_7581#1 TCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATG 252 ************************************************************ consensus_7581#0 GTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAG 359 consensus_7581#1 GTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAG 312 ************************************************************ consensus_7581#0 C-ACTAATGCGAAACATTGGTGAGGAGTATCAAT-ATCCCAAATTGGTGTTCGCA-TCTC 416 consensus_7581#1 CGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTC 372 * ******************************** ******************** **** consensus_7581#0 ACGTGCCTCACACGAT--AATTATTC-TGGAGGATGTGAGCTCACAGGGATGGACAA-TG 472 consensus_7581#1 ACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTG 432 *************** * ****** ****************************** ** consensus_7581#0 G-AAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTT 531 consensus_7581#1 GCAAGGGTTGA------------------------------------------------- 443 * ********* consensus_7581#0 CCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTG 591 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 CACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATT 651 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 TATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTT 711 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 TCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAA 771 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 TGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAA 831 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 AATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGA 891 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 TTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGA 951 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 GATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGG 1011 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 CCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACT 1071 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 CTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGA 1131 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 AGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAAC 1191 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 GATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAA 1251 consensus_7581#1 ------------------------------------------------------------ consensus_7581#0 TCTAGAAGTTGTGA 1265 consensus_7581#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||