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Anopheles gambiae
cluster # 7581 cluster # 7581       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7581#0 length = 1265 sequences # 6  
consensus_7581#1 length = 443 sequences # 1  

consensusID : consensus_7581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1265
fasta sequence
                              [CGTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT-TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA-TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG-GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT-GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA-GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAATCTAGAAGTTGTGA]

[+] EMBL CNS08E55             [ GTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGA CTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTAC                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM629176             [ccgGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX619508             [       TAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTTGTCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGANACATTGGTGAGGAGTATCAATATCCCAAATNGGTGTTCGCATCTCACGTGCCTCACACGATNATTATTCTGGAGGATGTGAGCTCACAGGGGATNGACAATGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CNS08MNV             [                                                                                                                      GAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGCGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTATTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGGCAGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CNS08E56             [                                                                                                                                                                                                                                                                                                                                                     AAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCCTCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAATCTAGAAGTTGTGA]
[-] EMBL CNS08MNW             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAATTGCCAAGTTCCATGCGGCCTCTGTCGTACTACAAGGGAAGGGTCCTACCTTTGCGTCCAAAAAACAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTTAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAAT AATCTAGAAGTTt   ]


>consensus_7581#0 CGTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTTTCCTCGCC GGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAA CGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTGC AAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGAT CAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATGG TGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAGC ACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGT GCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACAGGGATGGACAATGGAAGGGTT GATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGC CTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGC GAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTT TCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAA GATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGAT ACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGA TACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTA CCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTA TCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCC GACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTA TATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTT TCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGAT CGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAATCTAGAAGT TGTGA



consensusID : consensus_7581#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence
                              [TCNAGGCAGAATCGCACGAGAATNTGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAGCGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTCACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTGGCAAGGGTTGA]

[+] EMBL BX469715             [TCNAGGCAGAATCGCACGAGAATNTGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAGCGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTCACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTGGCAAGGGTTGA]


>consensus_7581#1 TCNAGGCAGAATCGCACGAGAATNTGATGATTATTTTCGGCACGTTTNCGTGTAAGATAG AATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTG GCGATCATTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACG TGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAG ATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGC CTCAAATGGCAGCGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGT GTTCGCAGTCTCACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGG GATGGACAAGTGGCAAGGGTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7581#0      CGTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTTTCCTCGCC 60
consensus_7581#1      ---------------------------------------TCNAGGCAGAAT---CGCACG 18
                                                             **  *    * *   * * * 

consensus_7581#0      GGAGTGGTTAAATGATGATTATTTTCGGCACGTTTT-GTGTAAGATAGAATGTGATTCGA 119
consensus_7581#1      AGAATN------TGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGA 72
                       ** *       ***********************  ***********************

consensus_7581#0      ACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTG 179
consensus_7581#1      ACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTG 132
                      ************************************************************

consensus_7581#0      CAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGA 239
consensus_7581#1      CAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGA 192
                      ************************************************************

consensus_7581#0      TCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATG 299
consensus_7581#1      TCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATG 252
                      ************************************************************

consensus_7581#0      GTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAG 359
consensus_7581#1      GTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAG 312
                      ************************************************************

consensus_7581#0      C-ACTAATGCGAAACATTGGTGAGGAGTATCAAT-ATCCCAAATTGGTGTTCGCA-TCTC 416
consensus_7581#1      CGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTC 372
                      * ******************************** ******************** ****

consensus_7581#0      ACGTGCCTCACACGAT--AATTATTC-TGGAGGATGTGAGCTCACAGGGATGGACAA-TG 472
consensus_7581#1      ACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTG 432
                      ***************   * ****** ****************************** **

consensus_7581#0      G-AAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTT 531
consensus_7581#1      GCAAGGGTTGA------------------------------------------------- 443
                      * *********                                                 

consensus_7581#0      CCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTG 591
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      CACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATT 651
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      TATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTT 711
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      TCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAA 771
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      TGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAA 831
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      AATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGA 891
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      TTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGA 951
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      GATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGG 1011
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      CCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACT 1071
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      CTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGA 1131
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      AGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAAC 1191
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      GATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAA 1251
consensus_7581#1      ------------------------------------------------------------
                                                                                  

consensus_7581#0      TCTAGAAGTTGTGA 1265
consensus_7581#1      --------------
                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)