These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1307 fasta sequence [CCGGCATCTCAGTGTATGCGTAATATATAACGAAGTGTGCATATGTGTTATCCATATTGCTTAAAACGAACTCTATTCCCCACCCACCACCACAACACCTGTCGAAGAAACGGACGAGCTGGACCAGCAGCAGCAGCAGCAGCAACAATCAAGCATCAACAACAATCGTCGCTCGTATCCGACCACACCGGTGCGTAACCTAACCGTGCCACCGGCGATGGGCCAACGGACGGCGTCGGAGGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATGAGGGATGTCGGATGTCGAACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAAGGGAACAGAGAACATGATGAGTAGAGTTGGATGGC-AGGGTGTTGGTGGTACATTGTTGGTGATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGGGAGGAGTGCGATCGAAATGGTTTGGTGCATAGTTTCGCGTTGCTAGGTGTGTGCTATATT-GTGT----GTAGAGGTACGACCAGCGAGGCAAATCTGTCTCGAGGAAAAGAAAACTGAACTGATACTGGAACTAGGTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAAAGCACTGGTATAAATGAACAGAATTAAACCATTCACTTCTTTGCTCTTACAGCATCAAGCCGGCACA--GTGTGTGTGTGTCCAGTGGTGGAAGACAATAGTCTCTAACTCTGTGTACAGACA-GGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAACATTACGGGCACCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAATTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGAGGAACAATGCGTCCTACAACTAGGAAAGGGGTAAGGGCAATAGAAGTTGTTTAGAAATATATTTATACCAATAGCGGGTAGTAGTTGTGTGAAGTGAAAGCTGCTAGAATTAACGAATGTTCGAGCCGGAATGTCCGGGCTGTGTGGTGTGGTGTGTGTGTGTGGTGG] [+] EMBL BM585339 [CCGGCATCTCAGTGTATGCGTAATATATAACGAAGTGTGCATATGTGTTATCCATATTGCTTAAAACGAACTCTATTCCCCACCCACCACCACAACACCTGTCGAAGAAACGGACGAGCTGGACCAGCAGCAGCAGCAGCAGCAACAATCAAGCATCAACAACAATCGTCGCTCGTATCCGACCACACCGGTGCGTAACCTAACCGTGCCACCGGCGATGGGCCAACGGACGGCGTCGGAGGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATGAGGGATGTCGGATGTCGAACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAAGGGAACAGAGAACATGATGAGTAGAGTTGGATGGC AGGGTGTTGGTGGTACATTGTTGGTGATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGGGAGGAGTGCGATCGAAATGGTTTGGTGCATAGTTTCGCGTTGCTAGGTGTGTGCTATATTGGTGT GTAGAGGTACGACCAGCGAGGCAAATCTGTCTCGAGGAAAAGAAAACTGAACTGATACTGGAACTAGGTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAAAGCACTGGTATAAATGA ] [+] EMBL BX616371 [ CAGCAGCAGCAGCAGCAACAATCAAGCATCAACAACAATCGTCGCTCGTATCCGACCACACCGGTGCGTAACCTAACCGTGCCACCGGCGATGGGCCAACGGACGGCGTCGGAGGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATGAGGGATGTCGG TG CACACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAAGGGAACAGAGAACATGATGAGTAGAGTTGGATGGCAAGGGGGTTGGTGGTACATTGTTGGTGATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGAGTGGAGTGCGATCGAAATGGTTTGGTGCATAGTTTCGTGTTGCTAGGTGTGTGCTATATT GTGTACCACTA AAGTACGACCAGCGAGTCAAATCTGTCTC ] [+] EMBL BM633083 [ ccgGGACGGCGTCGGAGGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATGAGGGATGTCGGATGTCGAACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAAGGGAACAGAGAACATGATGAGTAGAGTTGGATGGC AGGGTGTTGGTGGTACATTGTTGGTGATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGGGAGGAGTGCGATCGAAATGGTTTGGTGCATAGTTTCGCGTTGCTAGGTGTGTGCTATATT GTGT GTAGAGGTACGACCAGCGAGGCAAATCTGTCTCGAGGAAAAGAAAACTGAACTGATACT GAACTAGGTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAAAGCACTGGTATAAATGAACAGAATTAAACCATTCACTTCTTTGCTCTTACAGCATCAAGCCGGCACA GTGTGTGTGTGTCCAGTGGTGGAAGACAATAGTCTCTAACTCTGTGTACAGACAGGGAGGACGGTGGTCGCACTAGA ] [+] EMBL BX609930 [ CTAGGTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAAAGCACTGGTATAAATGAACAGAATTAAACCATTCACTTCTTTGCTCTTACAGCATCAAGCCGGCACAGTGTGTGTGTGTGTCCAGTGGTGGAAGACAATAGTCTCTAACTCTGTGTACAGACA GGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAACATTACGGGCACCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGA ] [-] EMBL AGA282811 [ TATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAATTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGAGGAACAATGCGTCCTACAACTAGGAAAGGGGTAAGGGCAATAGAAGTTGTTTAGAAATATATTTATACCAATAGCGGGTAGTAGTTGTGTGAAGTGAAAGCTGCTAGAATTAACGAATGTTCGAGCCGGAATGTCCGGGCTGTGTGGTGTGGTGTGTGTGTGTGGTGG] consensusID : consensus_7583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [TTTTTTTTAAATAGCAATTGGAATTTAATGAAACGAAACATTACGGGCATCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAATTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGAGGAACAATGCGTCCTACAACTANGAAA] [+] EMBL AGA281187 [TTTTTTTTAAATAGCAATTGGAATTTAATGAAACGAAACATTACGGGCATCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAATTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGAGGAACAATGCGTCCTACAACTANGAAA] consensusID : consensus_7583#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGACAATAGTCTCTAACTCTGTGTACAGACAGGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAAACATTACGGGCATCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGAGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCG] [+] EMBL BM599608 [CCGCGGACGCGTGGGCGGACGCGTGGGGACAATAGTCTCTAACTCTGTGTACAGACAGGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAAACATTACGGGCATCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGAGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7583#0 CCGGCATCTCAGTGTATGCGTAATATATAACGAAGTGTGCATATGTGTTATCCATATTGC 60 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 TTAAAACGAACTCTATTCCCCACCCACCACCACAACACCTGTCGAAGAAACGGACGAGCT 120 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 GGACCAGCAGCAGCAGCAGCAGCAACAATCAAGCATCAACAACAATCGTCGCTCGTATCC 180 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 GACCACACCGGTGCGTAACCTAACCGTGCCACCGGCGATGGGCCAACGGACGGCGTCGGA 240 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 GGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATG 300 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 AGGGATGTCGGATGTCGAACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAA 360 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 GGGAACAGAGAACATGATGAGTAGAGTTGGATGGCAGGGTGTTGGTGGTACATTGTTGGT 420 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 GATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGGGAGGAGTGCGA 480 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 TCGAAATGGTTTGGTGCATAGTTTCGCGTTGCTAGGTGTGTGCTATATTGTGTGTAGAGG 540 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 TACGACCAGCGAGGCAAATCTGTCTCGAGGAAAAGAAAACTGAACTGATACTGGAACTAG 600 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 GTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAA 660 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 AGCACTGGTATAAATGAACAGAATTAAACCATTCACTTCTTTGCTCTTACAGCATCAAGC 720 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 CGGCACAGTGTGTGTGTGTCCAGTGGTGGAAGACAATAGTCTCTAACTCTGTGTACAGAC 780 consensus_7583#1 ------------------------------------------------TTTTTTTTAAAT 12 consensus_7583#2 ----CCGCGGACGCGTGGGCGGACGCGTGGGGACAATAGTCTCTAACTCTGTGTACAGAC 56 * * * * * consensus_7583#0 AGGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAA-CATTACGGGCACCACAGACA 839 consensus_7583#1 AGCA-------------ATTGGAATTTAATGAAACGAAA-CATTACGGGCATCACAGACA 58 consensus_7583#2 AGGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAAACATTACGGGCATCACAGACA 116 ** * * * ****************** *********** ******** consensus_7583#0 AAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGT 899 consensus_7583#1 AAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGT 118 consensus_7583#2 AAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGAGCAGACGTGT 176 ************************************************* ********** consensus_7583#0 ACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCA 959 consensus_7583#1 ACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCA 178 consensus_7583#2 ACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCA 236 ************************************************************ consensus_7583#0 AGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCA 1019 consensus_7583#1 AGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCA 238 consensus_7583#2 AGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCA 296 ************************************************************ consensus_7583#0 CCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAA 1079 consensus_7583#1 CCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAA 298 consensus_7583#2 CCGTACGTTGTAAGAGCAATCG-------------------------------------- 318 ********************** consensus_7583#0 TTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGA 1139 consensus_7583#1 TTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGA 358 consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 GGAACAATGCGTCCTACAACTAGGAAAGGGGTAAGGGCAATAGAAGTTGTTTAGAAATAT 1199 consensus_7583#1 GGAACAATGCGTCCTACAACTANGAAA--------------------------------- 385 consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 ATTTATACCAATAGCGGGTAGTAGTTGTGTGAAGTGAAAGCTGCTAGAATTAACGAATGT 1259 consensus_7583#1 ------------------------------------------------------------ consensus_7583#2 ------------------------------------------------------------ consensus_7583#0 TCGAGCCGGAATGTCCGGGCTGTGTGGTGTGGTGTGTGTGTGTGGTGG 1307 consensus_7583#1 ------------------------------------------------ consensus_7583#2 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||