These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1051 fasta sequence [AACCACGAGGTCCGAAAGCGATCACACAGTGAGGCGGTGCATCTTTTTCAGTTGGATATCGTCACAGTACACATTTTGTGTGTAAAAATGTTCTACTAACAACAAGTGTGATGATGTTTCGTTCGCTCGCGAGCTAATAACATTCCAGTGGTGAAATCTGGTTCTAAAAATTGCAAAAGTGTACCAGTGTGCGTGAAATTACCACACATGACGTACCTACTATAGTGAATATTACTGCACGGAACCATTTGTAAAGCAAAGCATTTTTGACTGTAAAACATGTCGCTAACGGATAAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCCATCAAGGTGAAGCACGTCCGTGCGG-CTATCATTGGTACATTCCACAGCAATGGTGCGCATGCATTTTGGGCCATTGCCATCCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAAGTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCAC-CCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCCGGAAAAG-ATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCCTTGCATTCAAGACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCTGCTGACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGGACAGTCGCGCAATCTGCAGTATTTTGTTAACCTGATCA] [+] EMBL CNS09MVZ [AACCACGAGGTCCGAAAGCGATCACACAGTGAGGCGGTGCATCTTTTTCAGTTGGATATCGTCACAGTACACATTTTGTGTGTAAAAATGTTCTACTAACAACAAGTGTGATGATGTTTCGTTCGCTCGCGAGCTAATAACATTCCAGTGGTGAAATCTGGTTCTAAAAATTGCAAAAGTGTACCAGTGTGCGTGAAATTACCACACATGACGTACCTACTATAGTGAATATTACTGCACGGAACCATTTGTAAAGCAAAGCATTTTTGACTGTAAAACATGTCGCTAACGGATAAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCCATCAAGGTGAAGCACGTCCGTGCGGTCTATCATTGGTACATTCCACAGCAATGGTGCGCATGCATTTTGGGCCATTGCCATCCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAAGTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCAC CCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCCGGAAAAGCATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCCTTGCATTCAAGACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTT AACTGCACGCCAACTTACCCTCAGATCTGCTGACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGGACAGTCGCGCAATCTGCAGTA ] [+] EMBL CNS08JD8 [ CGATCACACAGTGAGGCGGTGCATCTTTTTCAGTTGGATATCGTCACAGTACACATTTTGTGTGTAAAAATGTTCTACTAACAACAAGTGTGATGATGTTTCGTTCGCTCGCGAGCTAATAACATTCCAGTGGTGAAATCTGGTTCTAAAAATTGCAAAAGTGTACCAGTGTGCGTGAAATTACCACACATGACGTACCTACTATAGTGAATATTACTGCACGGAACCATTTGTAAAGCAAAGCATTTTTGACTGTAAAACATGTCGCTAACGGATAAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCCATCAAGGTGAAGCACGTCCGTGCGG CTATCATTGGTACATTCCACAGCAATGGTGCGCATGCATTTTGGGCCATTGCCATCCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAAGTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCAC CCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCTGGAAAAG ATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCCTTGCATTCAAGACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTC ] [-] EMBL CNS09MW0 [ TTGGATATCGTCACAGTACACATTTTGTGTGTAAAAATGTTCTACTAACAACAAGTGTGATGATGTTTCGTTCGCTCGCGAGCTAATAACATTCCAGTGGTGAAATCTGGTTCTAAAAATTGCAAAAGTGTACCAGTGTGCGTGAAATTACCACACATGACGTACCTACTATAGTGAATATTACTGCACGGAACCATTTGTAAAGCAAAGCATTTTTGACTGTAAAACATGTCGCTAACGGATAAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCCATCAAGGTGAAAGACGTCCGTGCGG CTATCATTGGTACATTCCACAGCAATGGTGCGCATGCATTTTGGGCCATTGCCATCCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAAGTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCACTCCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCCGGAAAAG ATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCCTTGCATTCAAGACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCTGCTGACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGGACAGTCGCGCAATCTGCAGTATTTTGTTAACCTGATCA] [-] EMBL CNS08JD9 [ AAAAATGTTCTACTAACAACAAGTGTGATGATGTTTCGTTCGCTCGCGAGCTAATAACATTCCAGTGGTGAAATCTGGTTCTAAAAATTGCAAAAGTGTACCAGTGTGCGTGAAATTACCACACATGACGTACCTACTATAGTGAATATTACTGCACGGAACCATTTGTAAAGCAAAGCATTTTTGACTGTAAAACATGTCGCTAACGGATAAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCCATCAAGGTGAAAGACGTCCGTGCGG CTATCATTGGTACATTCCACAGCAATGGTGCGCATGCATTTTGGGCCATTGCCATCCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAAGTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCAC CCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCTGGAAAAG ATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCCTTGCATTCAAGACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCTGCTGACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTG ] consensusID : consensus_7584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 943 fasta sequence [CTGTTGGCCTACTGGAATTGGCAGTACGCCCTGACCAGGCTCAGTATTGATTCTGTGAAAGTGAAACAGTGAGGATCATCGAAGGTGGGATCCGAAAGTACCTACTATAGTGAATATTACTGCACGGAACCATTTGTAAAGCAAAGCATTTTTAACTGTAAAACATGTCGCTAACGGATAAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCCATCAAGGTAAAAGACGTCCGTGCGG-CTATCATTGGTACATTCCACAGCAATGGTGCGCATGCATTTTG-G-GCCATTGCCATACCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAAGTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCACCCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCTGGAAAAGATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCC-TTGCATTCAAGACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCTGCTGACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGGACAGTCGCGCAATCTGCAGTATTTTGTTAACCTGATCACCATGA] [-] EMBL CNS09P50 [CTGTTGGCCTACTGGAATTGGCAGTACGCCCTGACCAGGCTCAGTATTGATTCTGTGAAAGTGAAACAGTGAGGATCATCGAAGGTGGGATCCGAAAGTACCTACTATAGTGAATATTACTGCACGGAACCATTTGTAAAGCAAAGCATTTTTAACTGTAAAACATGTCGCTAACGGATAAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCCATCAAGGTAAAAGACGTCCGTGCGG CTATCATTGGTACATTCCACAGCAATGGTGCGCATGCATTTTG G GCCATTGCCATACCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAAGTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCACCCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCTGGAAAAGATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCCATTGCATTCAAAACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCTGCTAACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGCACA ] [+] EMBL CNS09P4Z [ AGTATTGATTCTGTGAAAGTGAAA AGTGAGGATCATCGAAGGTGGGATCCGAAAGTACCTACTATAGTGAATATTACTGCACGGAACCATTTGTAAAGCAAAGCATTTTTGACTGTAAAACATGTCGCTAACGGATAAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCCATCAAGGTGAAGCACGTCCGTGCGGTCTATCATTGGTACATTCCACAGCAATGGTGCGCATGCATTTTGTGTGCCATTGCCAT CCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAAGTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCACCCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCTGGAAAAGATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCC TTGCATTCAAGACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCTGCTGACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGGACAGTCGCGCAATCTGCAGTATTTTGTTAACCTGATCACCATGA] [+] EMBL BM605328 [ ccgGGGCCACCCGCTATGCTGTCAGCATTCCATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGGGTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGATCGCAACCCCCGCGTGCCGGGCAGCTTATCGTTGCGCCAGGGCGATCTGGAAAAGATTGGCGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGATATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGATGACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCC TTGCATTCAAGACTCGAACCCACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCTGCTGACTGGGCATCGCCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGGACAGTCGCGCAATCTGCAGTATTTTGTTAACCTGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7584#0 AACCACGAGGTCCGAAAGCGATCACACAGTGAGGCGGTGCATCTTTTTCAGTTGGATATC 60 consensus_7584#1 ------------------------------------------------------------ consensus_7584#0 GTCACAGTACACATTTTGTGTGTAAAAATGTTCTACTAACAACAAGTGTGATGATGTTTC 120 consensus_7584#1 ----------------------------------------------------------CT 2 consensus_7584#0 GTTCGCTCGC--GAGCTAATAACATTCCAGTGGTGAAATCTGGTTCTAAAAATTGCAAAA 178 consensus_7584#1 GTTGGCCTACTGGAATTGGCAGTACGCCC-TGACCAGGCTCAGTATTGATT-CTGTGAAA 60 *** ** * ** * * * ** ** * ** * * ** *** consensus_7584#0 GTGTACCAGTGTGCGT----GAAATTACCACACATGACGTACCTACTATAGTGAATATTA 234 consensus_7584#1 GTGAAACAGTGAGGATCATCGAAGGTGGGATCCG-AAAGTACCTACTATAGTGAATATTA 119 *** * ***** * * *** * * * * ********************** consensus_7584#0 CTGCACGGAACCATTTGTAAAGCAAAGCATTTTTGACTGTAAAACATGTCGCTAACGGAT 294 consensus_7584#1 CTGCACGGAACCATTTGTAAAGCAAAGCATTTTTAACTGTAAAACATGTCGCTAACGGAT 179 ********************************** ************************* consensus_7584#0 AAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCC 354 consensus_7584#1 AAGGAATACTATAATCTGACTATCAGTATTTCCAAAGCGCTCAGCAATGTGGAAATGCCC 239 ************************************************************ consensus_7584#0 ATCAAGGTGAAGCACGTCCGTGCGGCTATCATTGGTACATTCCACAGCAATGGTGCGCAT 414 consensus_7584#1 ATCAAGGTAAAAGACGTCCGTGCGGCTATCATTGGTACATTCCACAGCAATGGTGCGCAT 299 ******** ** *********************************************** consensus_7584#0 GCATTTTGGGCCATTGCCAT-CCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAA 473 consensus_7584#1 GCATTTTGGGCCATTGCCATACCGGCAACCGATACAGGACAATCGGATAGTGGCGTGGAA 359 ******************** *************************************** consensus_7584#0 GTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCACCCGCTATGCTGTCAGCATTC 533 consensus_7584#1 GTTCTGCCATCTGCTGCACAAGATACTGCGCGAGGGCCACCCGCTATGCTGTCAGCATTC 419 ************************************************************ consensus_7584#0 CATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGG 593 consensus_7584#1 CATGCGGCACCGGGCCATGCTGCTGGAGGCCGGAAAGCTGTGGGGCCATCTGAACGATGG 479 ************************************************************ consensus_7584#0 GTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGA 653 consensus_7584#1 GTATGGTATTTGCATCAAGCACTACACCAAGCTGCTCGTGACGAAGCTCGAGTTTCACGA 539 ************************************************************ consensus_7584#0 TCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCCGGAAAAGATTGG 713 consensus_7584#1 TCGCAACCCCCGCGTACCGGGCAGCTTATCGTTGCGCCAGGGCGATCTGGAAAAGATTGG 599 *********************************************** ************ consensus_7584#0 CGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGA 773 consensus_7584#1 CGAGGGAGACATTAACATTTATTTCCAGCTCGCAGTTGAGATATTCGACTATCTGGATGA 659 ************************************************************ consensus_7584#0 TATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGAT 833 consensus_7584#1 TATCATTGCGCTGCAAGGCACAATATTCAATTCCATCACAACGTTCTGCGTCAGTTCGAT 719 ************************************************************ consensus_7584#0 GACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCCTTGCATTCAAGACTCGAACCC 893 consensus_7584#1 GACTTCGGCGGGACAGTGTCGTTTGGCACCGTTGATTCCTTGCATTCAAGACTCGAACCC 779 ************************************************************ consensus_7584#0 ACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCT 953 consensus_7584#1 ACTGTACGATATGCTGGTGCGCGTGATGTTTAAACTGCACGCCAACTTACCCTCAGATCT 839 ************************************************************ consensus_7584#0 GCTGACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGG 1013 consensus_7584#1 GCTGACTGGGCATCGTCAGCGCTTCAACACACTGTTCCATCAGCTGAAATCGTTCTACGG 899 ************************************************************ consensus_7584#0 ACAGTCGCGCAATCTGCAGTATTTTGTTAACCTGATCA------ 1051 consensus_7584#1 ACAGTCGCGCAATCTGCAGTATTTTGTTAACCTGATCACCATGA 943 ************************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||