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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1155 fasta sequence
[TAATGTGGTCCGGGCAGTCGAGGAGGAATCATCCTTCGGAAGCTTTCAAATCGCGTTGATCGCGTTGAGGTGTGATCGAATATATGGTGGCCAAGGAACTTTGAATTTGGGGACACATTTTGGTCGGTCGATGAAGCGTGACAACGCGGAGAGGCGAATGGGAAAGCTAAGTGGCATATTTATTTCGTAAAAAGAGAAAATAATTGTGGTTCTTTAATTGTGCTGCTAAAGGGCTGTGCCTTGATGGCAAACACCACCACCTGTTCTCTGTTTTTGTTTTTTGCGCCATATCAAAGCATACACACACACAGCAGAC-AACAAACAAACAAAAAAAGGTGGTGTAAAGCGGCCAAGCCAATCCAAAACACAAAAACACGTTCTGAGATATATTATGATGTATCGCGCACAATCGATTTATTGTAATAGTAAAAGCATATGAAACATCTTATTACGTTAGTGAGCTTAGTTTAGGTACCAGGTATCTTTTATTACACACACACCAGCCGTTTGCACATCAATGTGTTGTCACAATGAGGGAAACGAGAAAAACTATAGGCTGATTGTTAAGCAGGGAACGAACAGGGAGGGGAACACACACTAGCAAAGTTAGTGCGTTAGTGGCGGTGACGGCGAAACAGAACACAAATTATTGTATAAATGACAGTGCGAAAACAATGCAAATTGCTTTCCGATTTCGTCATTCCTGTGCAGTAGCAGAATTCGCATCCCTCTTCTACATAGGAGTATGTTGCAGAAAAATTGCATTAATTCGTGATTATTGTACTATTTGCCGCATTATACATATTACACCATAGTAGTTTTATTTTTTCTTGTCCAGTTTCTTCAATATCGTATAATTCGTCCGTCACCGTCCGTGTCGAGTTAAGAAATGCATTTTAAGGTAAATTACATATTTAAACAACAAAAAAGCACATAATCATAGAAGGAAATCGTAATCCACCCATGTCAATCACACACACTGGTAGTCACCATATGATGGTGTTAGATGCTTTGATCGTAGCGTTCTCACAGTCNCGTCACGTACGTCTAGCGTTATCTAGCAAAGCAGGACGGGTCTAAAATAGCAACAAACGCTGAAAGTAACGGACAAGGGAAACCGGAGCATAATATGGTTGTCNCACGCTACGCAGTATA]
[+] EMBL BX604860 [TAATGTGGTCCGGGCAGTCGAGGAGGAATCATCCTTCGGAAGCTTTCAAATCGCGTTGATCGCGTTGAGGTGTGATCGAATATATGGTGGCCAAGGAACTTTGAATTTGGGGACACATTTTGGTCGGTCGATGAAGCGTGACAACGCGGAGAGGCGAATGGGAAAGCTAAGTGGCATATTTATTTCGTAAAAAGAGAAAATAATTGTGGTTCTTTAATTGTGCTGCTAAAGGGCTGTGCCTTGATGGCAAACACCACCACCTGTTCTCTGTTTTTGTTTTTTGCGCCATATCAAAGCATACACACACACAGCAGAC AA ]
[+] EMBL BX604076 [ CGGTCGATGAAGCGTGACAACGCGGAGAGGCGAATGGGAAAGCTAAGTGGCATATTTATTTCGTAAAAAGAGTAAATAATTGTGTTTCTTTAATTGTGCTGCTAAAGGGCTGTGCCTTGATGGCAAACACCACCACCTGTTCTCTGTTTTTGTTTTTTGCGCCATATCAAAGCATACACACACACAGCAGACAAACAAACAAACAAAAAAAGGTGGTGTAAAGCGGCCAAGCCAATCCAAAACACAAAAACACGTTCTGAGATATATTATGATGTATCGCGCACAATCGATTTATTGTAATAGTAAAAGCATATGAAACATCTTATTACGTTAGTGAGCTTAGTTTAGGTACCAGGTATCTTTTATTACACACACACCAGCCGTTTGCACATCAATGTGTTGTCACAATGAGGGAAACGAGAAAAACTATAGGCTGATTGTTAAGCAGGGAACGAACAGGGAGGGGAACACACACTAGCAAAGTTAGTGCGTTAGTGGCGGTGAC ]
[+] EMBL AL694055 [ ccggnttnATACACACACACAGCAGAC AAC AACAAACAAAAAAAGGTGGTGT AAGCGGCCAAGCCAATCCAAAACACAAAAACACGTTCTGAGATATATTATGATGTATCGCGCACAATCGATTTATTGTAATAGTAAAAGCATATGAAACATCTTATTACGTTAGTGAGCTTAGTTTAGGTACCAGGTATCTTTTATTACACACACACCAGCCGTTTGCACATCAATGTGTTGTCACAATGAGGGAAACGAGAAAAACTATAGGCTGATTGTTAAGCAGGGAACGAACAGGGAGGGGAACACACACTAGCAAAGTTAGTGCGTTAGTGGCGGTGACGGCGAAACAGAACACAAATTATTGTATAAATGACAGTGCGAAAACAATGCAAATTGCTTTCCGATTTCGTCATTCCTGTGCAGTAGCAGAATTCGCATCCCTCTTCTACATAGGAGTATGTTGCAGAAAAATTGCATTAATTCGTGATTATTGTACTATTTGCCGCATTATACATATTACACCATAGTAGTTTTATTTTTTCTTGTCCAGTTTCTTCAATATCGTATAATTCGTCCGTCACCGTCCGTGTCGAGTTAAGAAATGCATTTTAAGGTAAATTACATATTTAAACAACAAAAAAGCACATAATCATAGAAGGAAATCGTAATCCACCCATGTCAATCACACACACTGGTAGTCACCATATGATGGTGTTAGATGCTTTGATCGTAGCGTTCTCACAGTCNCGTCACGTACGTCTAGCGTTATCTAGCAAAGCAGGACGGGTCTAAAATAGCAACAAACGCTGAAAGTAACGGACAAGGGAAACCGGAGCATAATATGGTTGTCNCACGCTACGCAGTATA]
consensusID : consensus_7587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence
[CTTCAATATCGTATAATTCGTCCGTCACCGTCCGTGTCGAGTTAAGAAATGCATTTTAAGGTAAATTACATATTTAAACAACAAAAAAGCACATAATCATAGAAGGAAATCGTAATCCACCCATGTCAATCACACACACTGGTAGTCACCATATGATGGTGTTAGATGCTTTGATCGTAGCGTTTTTTGTTTGTTTTGTTGTTTATGTTTTAGCAAAGCAGGACGGGTCTAAAATAGCAAAAACGCTGAAAGTAACGGAAAGGGAAACGGAGCATAATATGGTTGTAAGCTAAGAGTATAATTCAGAATAATTTATATTATCGTTTTTTTTGTTTGTTTGGCTAAAACACATTTCGATACGAGCGTGAATTGTGGTAGCTTTGAGGGGAGGATATGTGATGAGTGCGCCCAATAGAGTGGCTAGCCATAGCAGCGAAATGATTCTTCTCCTTTTCAGAGTGATTTTTGTGCATTATCGTATTAAGAGCTAGATGAAGTCTTTGCGTCCACTTTTTACGTTTAAAATGGGAAATGTTCAGGGCAAGTCTCTGTTTTGTTTTCTGTTTTTTTACATTTAATTTTACTTGTAAGAGACACTGTGGACGTCTAAGGGTTATAAATGCTATGCTGTTGATTACTACTACAACTACTACTACTAGCGCTAGTGAGAATCGCGTGTGT]
[+] EMBL BX616695 [CTTCAATATCGTATAATTCGTCCGTCACCGTCCGTGTCGAGTTAAGAAATGCATTTTAAGGTAAATTACATATTTAAACAACAAAAAAGCACATAATCATAGAAGGAAATCGTAATCCACCCATGTCAATCACACACACTGGTAGTCACCATATGATGGTGTTAGATGCTTTGATCGTAGCGTTTTTTGTTTGTTTTGTTGTTTATGTTTTAGCAAAGCAGGACGGGTCTAAAATAGCAAAAACGCTGAAAGTAACGGAAAGGGAAACGGAGCATAATATGGTTGTAAGCTAAGAGTATAATTCAGAATAATTTATATTATCGTTTTTTTTGTTTGTTTGGCTAAAACACATTTCGATACGAGCGTGAATTGTGGTAGCTTTGAGGGGAGGATATGTGATGAGTGCGCCCAATAGAGTGGCTAGCCATAGCAGCGAAATGATTCTTCTCCTTTTCAGAGTGATTTTTGTGCATTATCGTATTAAGAGCTAGATGAAGTCTTTGCGTC ]
[+] EMBL BX616206 [ CATGTCAATCACACACACTGGTAGTCACCATATGATGGTGTTAGATGCTTTGATCGTAGCGTTTTTTGTTTGTTTTGTTGTTTAGGTTTTAGCAAAGCAGGACGGGTCTAAAATAGCAAAAACGCTGAAAGTAACGGAAAGGGAAACGGAGCATAATATGGTTGTAAGCTAAGAGTATAATTCAGAATAATTTATATTATCGTTTTTTTTGTTTGTTTGGCTAAAACACATTTCGATACGAGCGTGAATTGTGGTAGCTTTGAGGGGAGGATATGTGATGAGTGCGCCCAATAGAGTGGCTAGCCATAGCAGCGAAATGATTCTTCTCCTTTTCAGAGTGATTTTTGTGCATTATCGTATTAAGAGCTAGATGAAGTCTTTGCGTCCACTTTTTACGTTTAAAATGGGAAATGTTCAGGGCAAGTCTCTGTTTTGTTTTCTGTTTTTTTACATTTAATTTTACTTGTAAGAGACACTGTGGACGTCTAAGGGTTATAAATGCTATGCTGTTGATTACTACTACAACTACTACTACTAGCGCTAGTGAGAATCGCGTGTGT]
[+] EMBL BX613211 [ CAGCGAAATGATTCTTCTCCTTTTCAGAGTGATTTTTGCGCATTATCGTATTAAGAGCTAGATGAAGTCTTTGCGTCCACTTTTTACGTTTAAAATGGGAAATGTTCAGGGCAAGTCTCTGTTTTGTTTTCTGTTTTTTTACATTTAATTTTACTTGTAAGAGACACTGTGGACGTCTAAGGGTTATAAATGCTATGCTGTTGATTACTACTACAACTACCACTACTAGCGCTAGTGAGAATCGCGTGgg ]
consensusID : consensus_7587#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[CCGCCCACGCGTCCGAGAGTAAATAATTGCGTTTCATTAATTGTGCTGCTAAAGGGCTGTGCCTTGATGGGCAAACGCCACCACCTGTTCTCGGTTTTTGTTTTGCGCCATATCAAAGCATACACACACACAGCAGACAAACAATAAAAAAGGTGGTGTAAAGCGGCCAAGCCAATCCAAAACACAAAAACACGTTCTGAGATATATTATGATGTATCGCGCACAATCGATTTATTGTAATATTAAAAGCATATGAAACATCTTATACGTTAGTGAGCTTAGTTTAGGTACCAGGTATCTTTTATTACACACACACCAGCAGTTTGCACATCAATGTGTGACAGAGGGAAACAAGAAGTACTACAGGCTGTTTGTTAAGCAGGGAACGAACAGGGGGGAGGGGGGACACACTAGCAAAGTTAGTGCGTTAGTGGCGGTGACGGCGAAACAGAACACAAATTATTGTATAAATGAAAGTGCGAAAACAATGCAAAATGCTTTCCGATTTCGTCATTCCTGTGCAGTAGCAGAATTCGCATCCCTCTTCTACACAGGAGTATGTTGCAGAAAAATTGCAATAATTCGTGATTATTGCACTATTT]
[+] EMBL BM584077 [CCGCCCACGCGTCCGAGAGTAAATAATTGCGTTTCATTAATTGTGCTGCTAAAGGGCTGTGCCTTGATGGGCAAACGCCACCACCTGTTCTCGGTTTTTGTTTTGCGCCATATCAAAGCATACACACACACAGCAGACAAACAATAAAAAAGGTGGTGTAAAGCGGCCAAGCCAATCCAAAACACAAAAACACGTTCTGAGATATATTATGATGTATCGCGCACAATCGATTTATTGTAATATTAAAAGCATATGAAACATCTTATACGTTAGTGAGCTTAGTTTAGGTACCAGGTATCTTTTATTACACACACACCAGCAGTTTGCACATCAATGTGTGACAGAGGGAAACAAGAAGTACTACAGGCTGTTTGTTAAGCAGGGAACGAACAGGGGGGAGGGGGGACACACTAGCAAAGTTAGTGCGTTAGTGGCGGTGACGGCGAAACAGAACACAAATTATTGTATAAATGAAAGTGCGAAAACAATGCAAAATGCTTTCCGATTTCGTCATTCCTGTGCAGTAGCAGAATTCGCATCCCTCTTCTACACAGGAGTATGTTGCAGAAAAATTGCAATAATTCGTGATTATTGCACTATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7587#0 TAATGTGGTCCGGGCAGTCGAGGAGGAATCATCCTTCGGAAGCTTTCAAATCGCGTTGAT 60
consensus_7587#2 ------------------------------------------------------------
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 CGCGTTGAGGTGTGATCGAATATATGGTGGCCAAGGAACTTTGAATTTGGGGACACATTT 120
consensus_7587#2 ------------------------------------------------------------
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 TGGTCGGTCGATGAAGCGTGACAACGCGGAGAGGCGAATGGGAAAGCTAAGTGGCATATT 180
consensus_7587#2 ---------------------------------------------------CCGCCCACG 9
consensus_7587#1 ----------------------------------CTTCAATATCGTATAATTCGTCCGT- 25
*
consensus_7587#0 TATTTCGTAAAAAGAGAAAATAATTGTGGTTCT---TTAATTGTGCTGCTAAAGGGC--- 234
consensus_7587#2 CGTCC------GAGAGTAAATAATTGCGTTTCA---TTAATTGTGCTGCTAAAGGGC--- 57
consensus_7587#1 CACCGTCCGTGTCGAGTTAAGAAATGCATTTTAAGGTAAATTACATATTTAAACAACAAA 85
*** ** ** ** ** * **** **** *
consensus_7587#0 ----TGTGCCTTGATGG-CAAACACCACCACCTGTTCTCTGT--TTTTGTTTTTTG---- 283
consensus_7587#2 ----TGTGCCTTGATGGGCAAACGCCACCACCTGTTCTCGGT--TTTTGTTT--TG---- 105
consensus_7587#1 AAAGCACATAATCATAGAAGGAAATCGTAATCCACCCATGTCAATCACACACACTGGTAG 145
* ** * * * * * * * **
consensus_7587#0 -CGCCATATCAAAGCAT-ACACACA-----CACAGCAGACAACAAACAAACAAAAAAAGG 336
consensus_7587#2 -CGCCATATCAAAGCAT-ACACACA-----CACAGCAGACAAACAATAAA-----AAAGG 153
consensus_7587#1 TCACCATATGATGGTGTTAGATGCTTTGATCGTAGCGTTTTTTGTTTGTTTTGTTGTTTA 205
* ****** * * * * * * * ***
consensus_7587#0 TGGTGTAAAGCGGCCAAGCCAATCCAAAACACAAAAACACGTTCTGAGATATATTATGAT 396
consensus_7587#2 TGGTGTAAAGCGGCCAAGCCAATCCAAAACACAAAAACACGTTCTGAGATATATTATGAT 213
consensus_7587#1 TGTTTTAGCAAAGCAGGACGGGTCTAAAATAGCAAAA-ACGCTGAAAGTAACGGAAAGGG 264
** * ** ** * ** **** * **** *** * ** * * *
consensus_7587#0 GTATCGCGCACAATCGATTTATTGTAATAGTAAAAGCATA---TGAAACATCTTATTACG 453
consensus_7587#2 GTATCGCGCACAATCGATTTATTGTAATATTAAAAGCATA---TGAAACATCTTAT-ACG 269
consensus_7587#1 AAACGGAGCATAATA---TGGTTGTAA-GCTAAGAGTATAATTCAGAATAATTTAT-ATT 319
* * *** *** * ****** *** ** *** ** * **** *
consensus_7587#0 TTAGTGAGCTTAGTTTAGGTACCAGGTATCTTTTATTACACACACACCAGCCGTTTGCAC 513
consensus_7587#2 TTAGTGAGCTTAGTTTAGGTACCAGGTATCTTTTATTACACACACACCAGCAGTTTGCAC 329
consensus_7587#1 ATCGTTTTTTTTGTTTGTTTGGCTAAAACACATTTCGATACGAGCGTGAATTGTGGTAGC 379
* ** ** **** * * * ** * ** * * ** *
consensus_7587#0 ATCAATGTGTTGTCACAATGAGGGAAACGAGAAAAACTATAGGCTGATTGTTAAGCAGGG 573
consensus_7587#2 ATCAATGTGT---GACA--GAGGGAAACAAGAAGTACTACAGGCTGTTTGTTAAGCAGGG 384
consensus_7587#1 TTTGAGGGGAGGATATG-TGATGAGTGCGCCCAATAGAGT-GGCTAGCCAT--AGCAGCG 435
* * * * * ** * * * * **** * ***** *
consensus_7587#0 AACGAACAGGGAGG-----GGAACACACACTAGCAAAGTTAGTGCGTTAGTGGC--GGTG 626
consensus_7587#2 AACGAACAGGGGGGAG---GGGGGACACACTAGCAAAGTTAGTGCGTTAGTGGC--GGTG 439
consensus_7587#1 AAATGATTCTTCTCCTTTTCAGAGTGATTTTTGTGCA-TTATCGTATTAAGAGCTAGATG 494
** * * * * * *** * *** ** * **
consensus_7587#0 ACGGCGAAACAGAACACAAATTATTGTATAAATGA-CAGTGCG-AAAACAA---TGCAAA 681
consensus_7587#2 ACGGCGAAACAGAACACAAATTATTGTATAAATGA-AAGTGCG-AAAACAA---TGCAAA 494
consensus_7587#1 AAGTCTTTGC-GTCCACTTTTTACGTTTAAAATGGGAAATGTTCAGGGCAAGTCTCTGTT 553
* * * * * *** *** * ***** * ** * *** *
consensus_7587#0 TTGCTTTCCGATTTCGT-CATTCCTGTGCAGTAGCAGAATTCGCATCCCTCTTCTA---- 736
consensus_7587#2 ATGCTTTCCGATTTCGT-CATTCCTGTGCAGTAGCAGAATTCGCATCCCTCTTCTA---- 549
consensus_7587#1 TTGTTTTCTGTTTTTTTACATTTAATTTTACTTGTAAGAGACACTGTGGACGTCTAAGGG 613
** **** * *** * **** * * * * * * * * * ****
consensus_7587#0 -CATAGGAG-TATGTTGCAGAAAAATTGCATTAATTCGTGATTATTGTACTATTTGCCGC 794
consensus_7587#2 -CACAGGAG-TATGTTGCAGAAAAATTGCAATAATTCGTGATTATTGCACTATTT----- 602
consensus_7587#1 TTATAAATGCTATGCTGTTGATTA-CTACTACAACTACTACTACTAGCGCTAGTGAGAAT 672
* * * **** ** ** * * * ** * * * * * *** *
consensus_7587#0 ATTATACATATTACACCATAGTAGTTTTATTTTTTCTTGTCCAGTTTCTTCAATATCGTA 854
consensus_7587#2 ------------------------------------------------------------
consensus_7587#1 CGCGTGTGT--------------------------------------------------- 681
consensus_7587#0 TAATTCGTCCGTCACCGTCCGTGTCGAGTTAAGAAATGCATTTTAAGGTAAATTACATAT 914
consensus_7587#2 ------------------------------------------------------------
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 TTAAACAACAAAAAAGCACATAATCATAGAAGGAAATCGTAATCCACCCATGTCAATCAC 974
consensus_7587#2 ------------------------------------------------------------
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 ACACACTGGTAGTCACCATATGATGGTGTTAGATGCTTTGATCGTAGCGTTCTCACAGTC 1034
consensus_7587#2 ------------------------------------------------------------
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 NCGTCACGTACGTCTAGCGTTATCTAGCAAAGCAGGACGGGTCTAAAATAGCAACAAACG 1094
consensus_7587#2 ------------------------------------------------------------
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 CTGAAAGTAACGGACAAGGGAAACCGGAGCATAATATGGTTGTCNCACGCTACGCAGTAT 1154
consensus_7587#2 ------------------------------------------------------------
consensus_7587#1 ------------------------------------------------------------
consensus_7587#0 A 1155
consensus_7587#2 -
consensus_7587#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||