These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1236 fasta sequence [CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA] [+] EMBL CNS098I2 [CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAG GACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAAT ] [+] EMBL BM576665 [ ccgacCAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCACTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGA ] [+] EMBL AGA285267 [ CCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTT ] [+] EMBL BX627095 [ AGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCACTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAANGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGNGCGCCAACGGCAAATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGGGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGC ] [-] EMBL CNS098I3 [ tttTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTTCCCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTTGTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGTTCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAG ] [-] EMBL AGA283971 [ TCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA] consensusID : consensus_7593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [GCCAGGANCAATCAAATGAGCGACAATCCAGCGAGGCGTTAGTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACACCG] [+] EMBL AL932965 [GCCAGGANCAATCAAATGAGCGACAATCCAGCGAGGCGTTAGTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7593#0 CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGC 60 consensus_7593#1 ----------------------------------GCCAGGANCAATC-----AAATGAGC 21 * *** ** ******** consensus_7593#0 GACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCA 120 consensus_7593#1 GAC-AATCCAGCGAGGCGTTA-GTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCA 79 *** ***************** ******************************** ***** consensus_7593#0 GTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCT 180 consensus_7593#1 GTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCT 139 ************************************************************ consensus_7593#0 GACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCG 240 consensus_7593#1 GACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCG 199 ************************************************************ consensus_7593#0 AGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCAT 300 consensus_7593#1 AGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCAT 259 ************************************************************ consensus_7593#0 CGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCC 360 consensus_7593#1 CGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCC 319 ************************************************************ consensus_7593#0 CGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAA 420 consensus_7593#1 CGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAA 379 ******************************************************** *** consensus_7593#0 GGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGC 480 consensus_7593#1 GGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGC 439 ************************************************************ consensus_7593#0 AGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATA 540 consensus_7593#1 AGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATA 499 ************************************************************ consensus_7593#0 CGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTG 600 consensus_7593#1 CGGGATAAAAATATGAACACACCG------------------------------------ 523 ******************** *** consensus_7593#0 GTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTT 660 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 GCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAA 720 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 AAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGA 780 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 ATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGAC 840 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 CAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAA 900 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 CGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAA 960 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 ATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTG 1020 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 GGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCAT 1080 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 ATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTG 1140 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 TGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTT 1200 consensus_7593#1 ------------------------------------------------------------ consensus_7593#0 ATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA 1236 consensus_7593#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||