Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 7593 cluster # 7593       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7593#0 length = 1236 sequences # 6  
consensus_7593#1 length = 523 sequences # 1  

consensusID : consensus_7593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1236
fasta sequence
                              [CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA]

[+] EMBL CNS098I2             [CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAG GACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAAT                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM576665             [                                        ccgacCAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCACTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AGA285267            [                                                                   CCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX627095             [                                                                                                                                                                                                                                                                                                                                       AGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCACTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAANGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGNGCGCCAACGGCAAATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGGGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGC                                                                                                                                                                                                                                                           ]
[-] EMBL CNS098I3             [                                                                                                                                                                                                                                                                                                                                                                  tttTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTTCCCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTTGTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGTTCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAG                 ]
[-] EMBL AGA283971            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA]


>consensus_7593#0 CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGC GACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCA GTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCT GACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCG AGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCAT CGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCC CGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAA GGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGC AGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATA CGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTG GTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTT GCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAA AAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGA ATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGAC CAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAA CGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAA ATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTG GGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCAT ATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTG TGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTT ATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA



consensusID : consensus_7593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence
                              [GCCAGGANCAATCAAATGAGCGACAATCCAGCGAGGCGTTAGTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACACCG]

[+] EMBL AL932965             [GCCAGGANCAATCAAATGAGCGACAATCCAGCGAGGCGTTAGTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACACCG]


>consensus_7593#1 GCCAGGANCAATCAAATGAGCGACAATCCAGCGAGGCGTTAGTGGTCCCAATGATACCAG CGCCATACCAGCCCCAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAG CTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCAC CGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAA GGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCC GTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGT GCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTC CGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAA CGGTGCCAACCCGAACATACGGGATAAAAATATGAACACACCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7593#0      CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGC 60
consensus_7593#1      ----------------------------------GCCAGGANCAATC-----AAATGAGC 21
                                                        * ***    **       ********

consensus_7593#0      GACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCA 120
consensus_7593#1      GAC-AATCCAGCGAGGCGTTA-GTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCA 79
                      *** ***************** ******************************** *****

consensus_7593#0      GTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCT 180
consensus_7593#1      GTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCT 139
                      ************************************************************

consensus_7593#0      GACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCG 240
consensus_7593#1      GACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCG 199
                      ************************************************************

consensus_7593#0      AGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCAT 300
consensus_7593#1      AGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCAT 259
                      ************************************************************

consensus_7593#0      CGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCC 360
consensus_7593#1      CGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCC 319
                      ************************************************************

consensus_7593#0      CGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAA 420
consensus_7593#1      CGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAA 379
                      ******************************************************** ***

consensus_7593#0      GGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGC 480
consensus_7593#1      GGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGC 439
                      ************************************************************

consensus_7593#0      AGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATA 540
consensus_7593#1      AGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATA 499
                      ************************************************************

consensus_7593#0      CGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTG 600
consensus_7593#1      CGGGATAAAAATATGAACACACCG------------------------------------ 523
                      ******************** ***                                    

consensus_7593#0      GTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTT 660
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      GCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAA 720
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      AAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGA 780
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      ATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGAC 840
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      CAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAA 900
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      CGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAA 960
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      ATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTG 1020
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      GGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCAT 1080
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      ATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTG 1140
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      TGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTT 1200
consensus_7593#1      ------------------------------------------------------------
                                                                                  

consensus_7593#0      ATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA 1236
consensus_7593#1      ------------------------------------
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)