These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 960 fasta sequence [CCGCCCGCTTCGAGTAAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAATTTTTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAC-AGCCCGTACGTCAA-TTCCTCCGACT-CGCAGTACGCCAGGGAGTTCGAGGAG-CAGATGCAAGCGCTGGTTATTAA-CTACGACA-TTGAGGAACCGTGCGCC-GAGGAGCAACATTCA--GCGCGCTAC-TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAAGATTCGATGCTGGAACCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACCAAACTGCTTACTGTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGTTATGAAGTTTAAGCTTTATCTTAATAGCGTAGAATTTGCTGTGCACGTGAACTCCAGCTC] [+] EMBL BM580642 [CCGCCCGCTTCGAGTAAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAGTTTTTATCGATAAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAC AGCCCGTACGTCAA TTCCTCCGACT CGCAGTACGCCAGGGAGTTCGAGGAG CAGATGCAAGCGCTGGTTATTAA CTACGACA TTGAGGAACCGTGCGCT GAGGAGCAACATTCA GCGCGCTAC TCTTTCACGAGTACGCCCCAGCCTTCCGGAAGTGAGCTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAG ] [+] EMBL BX621350 [ AAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAATTTTTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAC AGCCCGTACGTCAA TTCCTCCGACT CGCAGTACGCCAGGGAGTTCGAGGAG CAGATGCAAGCGCTGGTTATTAA CTACGACA TTGAGGAACCGTGCGCC GAGGAGCAACATTCA GCGCGCTAC TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCG ] [+] EMBL AL695998 [ gcccnggaaTTTTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCACTAGCCCGTACGTCAAGTTCCTCCGACTCCGCAGTACGCCAGGGAGTTCGNCGAGCCAGATGCAAGCGCTGGTTATTAAGCTACGANACTTGAGGAACCGTGCGCCTGAGGAGCAACATTCACGGGGCGCTACATCTTTCACGA ] [+] EMBL CNS09MIY [ CCAAAGCAAGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAG TGCTAACCACTCCAGCGCAGTTTCGTTGTGTGTGCTTGCTTGCAATCACAGCAATCGGAGCATCGCAAACTGTACCGCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAC AGCCCGTACGTCAA TTCCTCCGACT CGCAGTACGCCAGGGAGTTCGAGGAG CAGATGCAAGCGCTGGTTATTAA CTACGACA TTGAGGAACCGTGCGCC GAGGAGCAACATTCA GCGCGCTAC TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGCACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAAGATTCGATGCTGGAACCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACCAAACTGCTTACTGTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGTTATGAAGTTTAAGCTTTATCTTAATAGCGTAGAATTTGCTGTGCACGTGAACTCCAGCTC] [+] EMBL BX613952 [ AGGAGCAACATTCA CCGCGCTAC TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGGGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGTACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTG ] [+] EMBL BX613953 [ ACATTCA CCGCGCTAC TCTTTCACGAGCACGCCCCAGCCTTCCGGAAGTGGACTGGGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCTGACGAAGCGGTACGAGGGGCAGAAGAAGAGGTGCCGAAGAAGAAAATAGCTATGAATTTTGACCAGTGCGGTCCCGAATCGTCCCAGGGTTCGTTCGAGTCGAGCGAAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCGCATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGGAAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAATATTCGATGCTGGAACCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACCAAACTGCTTACTGTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGTT ] consensusID : consensus_7594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [AATNGCCCGAGGTTAACAAATATCCCGCTTCGAGGTAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAGTTATTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGTGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCACAGTTTCGTTGTGTGTGCTATGCTTGCAATCACAGCAATCGGAGCATCTGCAAACTGTACCTGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAGAGCCCGTACGTCAATTCCTCCGACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACATTGAGGAACCGTGCGCTGAGTGAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCCCAGNCTTCCGGAAGTGGGCTGAGGCTGGCGCGTACGAAGCCAACCAACACTGTAACGGCTGACGAGTGGCGGCAACGATGTGGCAGTACNGCAAGAGGTTGCCGCACGAAGNNAACAATAGCTATGAATTTNTGAGCCAGTGCNCGGTCCCGNAATCGGTCCCAGNGGTTCCGNCTCGCAGTCNNGCGCCGAGGTATTTCCGAAT] [+] EMBL AL930087 [AATNGCCCGAGGTTAACAAATATCCCGCTTCGAGGTAAAATCGATCGACCGCACTGTGGCGTAGTTAGTTTAAGTTATTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCAAGTGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCTAACCACTCCAGCACAGTTTCGTTGTGTGTGCTATGCTTGCAATCACAGCAATCGGAGCATCTGCAAACTGTACCTGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGTACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAGAGCCCGTACGTCAATTCCTCCGACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACATTGAGGAACCGTGCGCTGAGTGAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCCCAGNCTTCCGGAAGTGGGCTGAGGCTGGCGCGTACGAAGCCAACCAACACTGTAACGGCTGACGAGTGGCGGCAACGATGTGGCAGTACNGCAAGAGGTTGCCGCACGAAGNNAACAATAGCTATGAATTTNTGAGCCAGTGCNCGGTCCCGNAATCGGTCCCAGNGGTTCCGNCTCGCAGTCNNGCGCCGAGGTATTTCCGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7594#0 --------------------CCGCCCGCTTCGAGTAAAAATCGATCGACCGCACTGTGGC 40 consensus_7594#1 AATNGCCCGAGGTTAACAAATATCCCGCTTCGAGGTAAAATCGATCGACCGCACTGTGGC 60 *********** ************************ consensus_7594#0 GTAGTTAGTTTAAATTTTTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCA 100 consensus_7594#1 GTAGTTAGTTTAAGTTATTATCGATTAGCTTTACTTTCTTGAGCAATGTACACCAAAGCA 120 ************* ** ******************************************* consensus_7594#0 AGCGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCT 160 consensus_7594#1 AGTGTATATTCTGCATTAGTGCGCGTTGCCATAGTTACAAGATAGCGGCTGTAAGCTGCT 180 ** ********************************************************* consensus_7594#0 AACCACTCCAGCGCAGTTTCGTTGTGTGTGCT-TGCTTGCAATCACAGCAATCGGAGCAT 219 consensus_7594#1 AACCACTCCAGCACAGTTTCGTTGTGTGTGCTATGCTTGCAATCACAGCAATCGGAGCAT 240 ************ ******************* *************************** consensus_7594#0 C-GCAAACTGTACC-GCCCGGAAGAACTGCTTGAAGGAGGAGCAGGAAGCAACATGGAGT 277 consensus_7594#1 CTGCAAACTGTACCTGCCCGGAAGAACTGCTTGAAAGTGGAGTAGGAAGCAACATGGAGT 300 * ************ ******************** * **** ***************** consensus_7594#0 ACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCACAGCCCGTACGTCAATTCCTCCG 337 consensus_7594#1 ACTCCAGTTTCGTTCGCGAGCTGCGCAGGGAATCCCAGAGCCCGTACGTCAATTCCTCCG 360 ************************************* ********************** consensus_7594#0 ACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACA 397 consensus_7594#1 ACTCGCAGTACGCCAGGGAGTTCGAGGAGCAGATGCAAGCGCTGGTTATTAACTACGACA 420 ************************************************************ consensus_7594#0 TTGAGGAACCGTGCGCCGAG-GAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCC 456 consensus_7594#1 TTGAGGAACCGTGCGCTGAGTGAGCAACATTCAGCGCGCTACTCTTTCACGAGCACGCCC 480 **************** *** *************************************** consensus_7594#0 CAGCCTTCCGGAAGTGGACTGAGGCTGGCGCGTACGAAGCCAACCACCACTGTATCGGCT 516 consensus_7594#1 CAGNCTTCCGGAAGTGGGCTGAGGCTGGCGCGTACGAAGCCAACCAACACTGTAACGGCT 540 *** ************* **************************** ******* ***** consensus_7594#0 GACGAA--GCGGCA-CGAGG-GGCAG---AAGAAGAGGT-GCCG----AAGAAGAAAATA 564 consensus_7594#1 GACGAGTGGCGGCAACGATGTGGCAGTACNGCAAGAGGTTGCCGCACGAAGNNAACAATA 600 ***** ****** *** * ***** ******* **** *** * **** consensus_7594#0 GCTATGAATTTT--GACCAGTGCG--GTCCCGAATC--GTCCCAGGGTTC---GTTCG-A 614 consensus_7594#1 GCTATGAATTTNTGAGCCAGTGCNCGGTCCCGNAATCGGTCCCAGNGGTTCCGNCTCGCA 660 *********** ******* ****** * ******* * * *** * consensus_7594#0 GTCGAGCG--AAGGTATTTCGATGCGGTACGATTCCTGCAACTCGATCGACGACATACCG 672 consensus_7594#1 GTCNNGCGCCGAGGTATTTCCGAAT----------------------------------- 685 *** *** ********* consensus_7594#0 CATCTGGTTTCGTGTGATGAATTTGCCTGTGATGCGCCCACGATTCGCGGAGAGAAACGG 732 consensus_7594#1 ------------------------------------------------------------ consensus_7594#0 AAGCTCGGCAGTCCCGTTCCGTTCGATGCACTGCAGGGAGAGGAAGATTCGATGCTGGAA 792 consensus_7594#1 ------------------------------------------------------------ consensus_7594#0 CCGGCCAAATATGATCTGTACCCGAGCGTATCGACGCCTGCTACGACCAAACTGCTTACT 852 consensus_7594#1 ------------------------------------------------------------ consensus_7594#0 GTTCCTGCGAAACGAACGTATGACGAGGCTAATAGGTAGAAGTTAGGTTATGAAGTTTAA 912 consensus_7594#1 ------------------------------------------------------------ consensus_7594#0 GCTTTATCTTAATAGCGTAGAATTTGCTGTGCACGTGAACTCCAGCTC 960 consensus_7594#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||