These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 693 fasta sequence [GGATATT-TGCTCCTGCAACATACCATCAAAGAGTCCTCGAACCAAACAAAGAAGCCCAAGAGGGAGAGAAAGC-GAGTGCGATTTGTGCCCAAACCACAATTTGTTACGGAAAAG-AAACCGCTAACCGAGCTCGAGAGACAGTGTGCCCGTGTGCGTTGCTTATTATTTACCAAATAGAAGAAGCCAAAAAATGAGCGTGAAAGATATTTACTATTCGGATAAATATTACGACGACGAGTACGAGTACAGACATGTCGTGCTACCGAAGGACATAGCGAAGCTGG-TGCCCAAAACACACCTCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACTACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACATAAG-AAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTCAGGACGAAATATGTGTGTGTGT------GTGTGTGTGTGTGTGTGTCGCGGCGTGTCCCTGCTGGATACGAATGTG--TGTGTGTGCGTGCGTGCGTGTGTATGAATGTATGAGTATGTACCCTTTGCCAATAGACACCCGGGGAGGCGTGCAACAACATCGCCCCTTGTTGTACGCGTCATGAAGATTCTGGAAATGTTCAACGCGCCGCGAGCGTCAGTT] [+] EMBL CNS09CYK [GGATATT TGCTCCTGCAACATACCATCAAAGAGTCCTCGAACCAAACAAAGAAGCCCAAGACGGAGAGAAAGC GAGTGCGATTTGTGCCCAAACCACAATTTGTTACGGAAAAG AAACCGCTAACCGAGCTCGAGAGACAGTGTGCCCGTGTGCGTTGCTTATTATTTACCAAATAGAAGAAGCCAAAAAATGAGCGTGAAAGATATTTACTATTCGGATAAATATTACGACGACGAGTACGAGTACAGACATGTCGTGCTACCGAA GACATAGCGAA CTGGTTGCCCAAAACACACCTCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACTACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACATAAGCAAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTCAGGACGAAATATGTGTGTGTGTGCGTGAGTGTGTGTGTGTGTGTATCGCGGCGTGTCCCTGCTGGATGCGAATGTG TGTGTGTGCGTGCGTGCGTGTGTATGAATGTATGAGTATGTACCCTTTGCCAATAGACACCCGGGGAGGCGTGCAACAACATCGCCCCTTGTTGTACGCGTC ] [+] EMBL BX626160 [ GATATT TGCTCCTGCAACATACCATCAAAGAGTCCTCGAACCAAACAAAGAAGCCCAAGAGGGAGAGAAAGC GAGTGCGATTTGTGCCCAAACCACAATTTGCTACGGAAAAG AAACCACTAACCGAGCTCGAGAGACAGTGTGCCCGTGTGCGTTGCTTATTATTTACCAAATAGAAGAAGCCAAAAAATGAGCGTGAAAGATATTTACTATTCGGATAAATATTACGACGACGAGTACGAGTACAGACATGTCGTGCTACCGAAGGACATAGCGAAGCTGG TGCCCAAAACACACCTCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACTACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACATAAG AAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTCAGGACGAAATA TGTGTGTGT GTGTGCGTGAGTGTGTGTCGCGGCGTGTCCCTGCTGGATACGAATGTGTATGTGTGTGCGTGCGTGAGTGTGTATGAATGTATGAGTATGTACCC ] [+] EMBL CNS09NS8 [ ATTATGCTCCTGCAACATACCATCAAAGAGTCCTCGAACCAAACAAAGAAGCCCAAGAGGGAGAGAAAGCAGAGTGCGATTTGTGCCCAAACCACAATTTGTTACGGAAAAGAAAACCGCTAACCGAGCTCGAGAGACAGTGTGCCCGTGTGCGTTGCTTATTATTTACCAAATAGAAGAAGCCAAAAAATGAGCGT ] [+] EMBL BM582677 [ ccgCATCAAAGAGTCCTCGAACCAAACAAAGAAGCCCAAGAGGGAGAGAAAGC GAGTGCGATTTGTGCCCAAACCACAATTTGTTACGGAAAAG AAACCGCTAACCGAGCTCGAGAGACAGTGTGCCCGTGTGCGTTGCTTATTATTTACCAAATAGAAGAAGCCAAAAAATGAGCGTGAAAGATATTTACTATTCGGATAAATATTACGACGACGAGTACGAGTACAGACATGTCGTGCTACCGAAGGACATAGCGAAGCTGG TGCCCAAAACACACCTCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACTACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACATAAGCAAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTCAGGACGAAATATGTGTGTGTGTGCGTGAGTGTGTGTGTGTGTGTATCGCGGCGTGTCCCTGCTGGATGCGAATGTG TGTGTGTGCGTGCGTGCGTGTGTATGAATGTATGAGTATGTACCCTTTGCCAATAGACACCCGGGGAGGCGTGCAACAACATCGCCCCTTGTTGTACGCGTCATGAAGATT ] [+] EMBL BM617132 [ ccgGAAAGC GAGTGCGATTTGTGCCCAAACCACAATTTGTTACGGAAAAG AAACCGCTAACCGAGCTCGAGCGACAGTGTGCCCGGGGGCGTTGATTATTATTTACCAAATAGAAGAAGCCAAAAAATGAGCGTGAAAGATATTTACTATTCGGATAAATATTACGACGACGAGTACGAGTACAGACATGTCGTGCTACCGAAGGACATAGCGAAGCTGG TACCCAAAACACACCTCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACTACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACATA AAAAAAGAACCTTCCCACCCTGGAGTAAAAACCACCCCGAGATCGATCGAGCTCTTCAGGACGAAATATGTGTGTGTGT GTGCGTGAGTGTGTGTGTCGCGGCGTGTCCCTGCTGGATACCAATGTG TGTGAGTGCGTGCGTGCGTGTGTATGAATGTATGAGTATGTACCCTTTGCCAATAGACACCCGGGGAGGCGTGCAACAACATCGCCCCTTGTTGTACGCGTCATGAAGA ] [+] EMBL BX627385 [ GTGCGTTGCTTATTATTTACCAAATAGAAGAAGCCAAAAAATGAGCGTGAAAGATATTTACTATTCGGATAAATATTACGACGACGAGTACGAGTACAGACATGTCGTGCTACCGAAGGACATAGCGAAGCTGG TGCCCAAAACACACCTCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACTACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACATAAG AAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTCAGGACGAAATA TGTGTGTGT GTGTGCGTGAGTGTGTGTCGCGGCGTGTCCCTGCTGGATACGAATGTGTATGTGTGTGCGTGCGTGAGTGTGTATGAATGTATGAGTATGTACCCTTTGCCAATAGACACCCGGGGAGGCGTGCAACAACATCGCCCCTTGTTGTACGCGTCATGAAGATTCTGGAAATGTTCAACGCGCCGCGAGCGTCAGTT] consensusID : consensus_7597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [GCAGAATCGGCACTGTAGGGCGAAGCTGGTGCCCAAAACACACCTCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACTACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACATAAGAAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTCAGGACGAAATATGTGTGTGTGTGTGCGTGAGTGTGTGTCGCGGCGTGTCCCTGCTGGATACGAATGTGTATGTGTGTGCGTGCGTGAGTGTGTATGAATGTATGAGTATGTACCCTTTGCCAATAGACACCCGGGGAGGCGTGCAACGAACATCGCCCCTTGTTGTACGCGTCATGAAGATTCTGGAAATGTTCAACGCGCCGCGAGCGTCAGTTCTCGCCGTCGTCGTGGTGTCGCCTCCCGGATATGAAAATCAGTTCGTCGCGTACTGTACCNCACCACAGCCTCCCAATCTAGGCGCGTCGCTTTAT] [+] EMBL BX468555 [GCAGAATCGGCACTGTAGGGCGAAGCTGGTGCCCAAAACACACCTCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACTACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACATAAGAAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTCAGGACGAAATATGTGTGTGTGTGTGCGTGAGTGTGTGTCGCGGCGTGTCCCTGCTGGATACGAATGTGTATGTGTGTGCGTGCGTGAGTGTGTATGAATGTATGAGTATGTACCCTTTGCCAATAGACACCCGGGGAGGCGTGCAACGAACATCGCCCCTTGTTGTACGCGTCATGAAGATTCTGGAAATGTTCAACGCGCCGCGAGCGTCAGTTCTCGCCGTCGTCGTGGTGTCGCCTCCCGGATATGAAAATCAGTTCGTCGCGTACTGTACCNCACCACAGCCTCCCAATCTAGGCGCGTCGCTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7597#0 GGATATTTGCTCCTGCAACATACCATCAAAGAGTCCTCGAACCAAACAAAGAAGCCCAAG 60 consensus_7597#1 ------------------------------------------------------------ consensus_7597#0 AGGGAGAGAAAGCGAGTGCGATTTGTGCCCAAACCACAATTTGTTACGGAAAAGAAACCG 120 consensus_7597#1 ------------------------------------------------------------ consensus_7597#0 CTAACCGAGCTCGAGAGACAGTGTGCCCGTGTGCGTTGCTTATTATTTACCAAATAGAAG 180 consensus_7597#1 ------------------------------------------------------------ consensus_7597#0 AAGCCAAAAAATGAGCGTGAAAGATATTTACTATTCGGATAAATATTACGACGACGAGTA 240 consensus_7597#1 ------------------------------------------------------------ consensus_7597#0 CGAGTACAGACATGTCGTGCTACCGA-AGGACATAGCGAAGCTGGTGCCCAAAACACACC 299 consensus_7597#1 ----------------GCAGAATCGGCACTGTAGGGCGAAGCTGGTGCCCAAAACACACC 44 * * ** * * ************************* consensus_7597#0 TCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACT 359 consensus_7597#1 TCATGACCGAGAACGAATGGCGAGCGATCGGTGTACAGCAGTCCCGTGGCTGGGTCCACT 104 ************************************************************ consensus_7597#0 ACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACAT 419 consensus_7597#1 ACATGGTGCACCAGCCCGAGCCCCACATTCTGCTGTTTCGAAGGCCCATCACGAAGACAT 164 ************************************************************ consensus_7597#0 AAGAAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTC 479 consensus_7597#1 AAGAAAAAAGAACCTTCCCACCCTGGAGCAAAAACCACCCCGAGATCGATCGAGCTCTTC 224 ************************************************************ consensus_7597#0 AGGACGAAATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGCGGCGTGTCCCTGCTGGA 539 consensus_7597#1 AGGACGAAATATGTGTGTGTGTGTGCGTGAGTGTGTGT--CGCGGCGTGTCCCTGCTGGA 282 ************************* *** ******** ******************** consensus_7597#0 TACGAATGTGT--GTGTGTGCGTGCGTGCGTGTGTATGAATGTATGAGTATGTACCCTTT 597 consensus_7597#1 TACGAATGTGTATGTGTGTGCGTGCGTGAGTGTGTATGAATGTATGAGTATGTACCCTTT 342 *********** *************** ******************************* consensus_7597#0 GCCAATAGACACCCGGGGAGGCGTGCAAC-AACATCGCCCCTTGTTGTACGCGTCATGAA 656 consensus_7597#1 GCCAATAGACACCCGGGGAGGCGTGCAACGAACATCGCCCCTTGTTGTACGCGTCATGAA 402 ***************************** ****************************** consensus_7597#0 GATTCTGGAAATGTTCAACGCGCCGCGAGCGTCAGTT----------------------- 693 consensus_7597#1 GATTCTGGAAATGTTCAACGCGCCGCGAGCGTCAGTTCTCGCCGTCGTCGTGGTGTCGCC 462 ************************************* consensus_7597#0 ------------------------------------------------------------ consensus_7597#1 TCCCGGATATGAAAATCAGTTCGTCGCGTACTGTACCNCACCACAGCCTCCCAATCTAGG 522 consensus_7597#0 ------------- consensus_7597#1 CGCGTCGCTTTAT 535 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||