These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 835 fasta sequence [CCCCGATCATCGTCACCTTGAGCACCATCCAGCTTGCAGCATCAATCTTTCGCATACGCGCATGAACTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTAGCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACGGTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACCGAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAACAAACCAACTTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCGCGGCACACTGT-CTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGT-CCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAGCTCATCGTTCATCCCGGCTTCAGCCCGAACAGCGTCACCGACGATATAGCGCTGATCAAGCTCGCGACCGACATTACGATGACACGGTACGTTCAACCGGTCTGTCTCTGGAGCTTGGAACCGAACCTGGACCTGATCGTGGGCCGCAACGGCACGGTCGTGGGCTTCGGGCTGACGGAGCACGATC-GGGTGTCGGACTATCTGCGGCAGGCCGCCATCGCTGTGGTCGATTCCTGGACGTGCATCGATAGCGACCGGCAGGTGTACGGTGCTACCCTAACCGCGAACATGTACTGTGGCGGAGGTAAAACCGGTGTGAGCGTGTGCAACCGGGACAGCGGAAGGGGGAATGTTTTTCNAGCAT] [+] EMBL BM654381 [ CCGATCATCGTCACCTTGAGCACCATCCAGCTTGCAGCATCAATCTTTCGCATACGCGCATGAACTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTAGCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACGGTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACCGAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAACAAACCAACTTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCGCGGCACACTGT CTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGT CCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAGCTCATCGTTCATCCCGGCTTCAGCCCGAACAGCGTCACCGACGATATAGCGCTGATCAAGCTCGCGACCGACATTACGATGACACGGTACGTTCAACCGGTCTGTCTCTGGAGCTTGGAACCGAACCTGGACCTGATCGTGGGCCGCAACGGCACGGTCGTGGGCTTCGGGCTGACGGAGCACGATC GGGTGTCGGACTATCTGCGGCAGG ] [+] EMBL BM637777 [ccggGATCATCGTCACCTTGAGCACCATCCAGCTTGCAGCATCAATCTTTCGCATACGCGCATGAACTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTAGCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACGGTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACCGAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAACAAACCAACTTCGAGTACGTGTGTGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCGCGGCACACTGT CTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGTCCCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAG ] [+] EMBL BM648621 [ ccgGTCACCTTGAGCACCATCCAGCTTGCAGCATCAATCTTTCGCATACGCGCATGAACTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTACCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACGGTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACCGAAACCAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAACAAACCAACTTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCGCGGCACACTGT CTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGT CCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCTAGCGTCCGCTCGCAGGAGCACCACCCCGAACAGCTCATCGTTCATCCCGGCTTCAGCCCGAACAGCGTCACCGACGATATAGCGCTGATCAAGCTCGCGACCGACATTACGATGACACGGTACGTTCAACCGGTCTGTCTCTGGAGCTTGGAACCGAACCTGGACCTGATCGTGGGCCGCAACGGCACGGTCGTGGGCTTCGGGCTGACGGAGCACGATCGGGGTGTCGGACTATCTGCGGCAGGCCGCCATCGCT ] [+] EMBL BX626943 [ ATCAATCTTTCGCATACGCGCATGAACTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTAGCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACGGTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACCGAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAACAAACCAACTTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCGCGGCACACTGT CTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGT CCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAGCTCATCGTTCATCCCGGCTTCAGCCCGAACAGCGTCACCGACGATATAGCGCTGATCAAGCTCGCGACCGACATTACGATGACACGGTACGTTCAACCGGTCTGTCTCTGGAGCTTGGAACCGAACCTGGACCTGATCGTGGGCCGCAACGGCACGGTCGTGGGCTTCGGGCTGACGGAGCACGATC GGGTGTCGGACTATCTGCGGCAGGNCGCCATCGCTGTGGTCGATTCCTGGACGTGCATCGATAGCGACCGGCAGGTGTACGGTGCTACCCTAACCGCGAACATGTACTGTGGCGGAGGTAAAACCGGTGTGAGCGTGTGCAACCGGGACAGCGGAAGGGGGAATGTTTTTCNAGCAT] [+] EMBL AGA282243 [ GAGGTGCGTAAAACGAACGCTCTGGATACGGTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACCGAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAACAAACCAACTTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACAATCCTTACCGCGGCACACTGT CTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGT CCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAGCTCATCGTTCATCCCGGCTTCAGCCCGAACAGCGTCACCGACGATATAGCGCTGATCAAGCTCGCGACCGACATTACGATGACACGGTACGTTCAACCGG ] [+] EMBL CNS09O80 [ GGTGCAGCATGGTACCGAAACGAAGGAGGGCCACTGGCCGTGGCACACAG TA CTACCATCGGGAACAAACCAACTTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACAATCCTTACCGCGGCACACTGTACTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGT CCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCAAGC ] consensusID : consensus_7598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [ATCAGGACCATCCAGCTTGCAATAATCTTTCGTACGCACATGATCTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTAGCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACGGTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACCGAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAGCAAACCAACTTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCGGTATGTATAAGTAAATAGTGTACTGGCAAACTGTGCACAAAAAATGGATTAATTGGTCGGTCGTCTAGCGGCACACTGTCTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGTCCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAGCT] [+] EMBL BX620434 [ATCAGGACCATCCAGCTTGCAATAATCTTTCGTACGCACATGATCTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTAGCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACGGTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACCGAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAGCAAACCAACTTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCGGTATGTATAAGTAAATAGTGTACTGGCAAACTGTGCACAAAAAATGGATTAATTGGTCGGTCGTCTAGCGGCACACTGTCTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGTCCGTGCAGGTTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7598#0 CCCCGATCATCGTCACCTTGAGCACCATCCAGCTTGCAGCATCAATCTTTCGCATACGCG 60 consensus_7598#1 -----------------ATCAGGACCATCCAGCTTGCAA---TAATCTTTCG--TACGCA 38 * ** *************** ********* ***** consensus_7598#0 CATGAACTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTA 120 consensus_7598#1 CATGATCTAGGGAATCCCCTTCGCCATTCCGCAATGGTTTCGATCTTGCGGGGATTTTTA 98 ***** ****************************************************** consensus_7598#0 GCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACG 180 consensus_7598#1 GCACTGATTGCAGTCTTCTGTGCGATTGGCGAGGTGCGTAAAACGAACGCTCTGGATACG 158 ************************************************************ consensus_7598#0 GTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACC 240 consensus_7598#1 GTTCCACTGGAGTGTGGAGAACGCAAAGTGAAAACCATATACCTGGTGCAGCATGGTACC 218 ************************************************************ consensus_7598#0 GAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAACAAACCAAC 300 consensus_7598#1 GAAACGAAGGAGGGCCACTGGCCGTGGCACACGGCCATCTACCATCGGGAGCAAACCAAC 278 ************************************************** ********* consensus_7598#0 TTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCG-------- 352 consensus_7598#1 TTCGAGTACGTGTGCGGTGGTTCGATCCTGGATAGAAACACGATCCTTACCGGTATGTAT 338 **************************************************** consensus_7598#0 ------------------------------------------------------------ consensus_7598#1 AAGTAAATAGTGTACTGGCAAACTGTGCACAAAAAATGGATTAATTGGTCGGTCGTCTAG 398 consensus_7598#0 CGGCACACTGTCTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGTCCGTGCAGG 412 consensus_7598#1 CGGCACACTGTCTGTACACCTCCCGCGGACTGATCAAGCTGGACCAGCTGTCCGTGCAGG 458 ************************************************************ consensus_7598#0 TTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAGC 472 consensus_7598#1 TTGGGCGCAATCAGCTGTCGGAAGCAAGCGTCCGCTCGCAGGAGCACCACCCCGAGCAGC 518 ************************************************************ consensus_7598#0 TCATCGTTCATCCCGGCTTCAGCCCGAACAGCGTCACCGACGATATAGCGCTGATCAAGC 532 consensus_7598#1 T----------------------------------------------------------- 519 * consensus_7598#0 TCGCGACCGACATTACGATGACACGGTACGTTCAACCGGTCTGTCTCTGGAGCTTGGAAC 592 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 CGAACCTGGACCTGATCGTGGGCCGCAACGGCACGGTCGTGGGCTTCGGGCTGACGGAGC 652 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 ACGATCGGGTGTCGGACTATCTGCGGCAGGCCGCCATCGCTGTGGTCGATTCCTGGACGT 712 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 GCATCGATAGCGACCGGCAGGTGTACGGTGCTACCCTAACCGCGAACATGTACTGTGGCG 772 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 GAGGTAAAACCGGTGTGAGCGTGTGCAACCGGGACAGCGGAAGGGGGAATGTTTTTCNAG 832 consensus_7598#1 ------------------------------------------------------------ consensus_7598#0 CAT 835 consensus_7598#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||