These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 991 fasta sequence [CCAGAATCGCCACGAGNTNATAAACATTTCGGCCGAGTCGCTCTCGTTGACGCAGGCCGAGTTCGATAGTTTCATGTCGGGCGAGCACGAGGGCACGTCGGCGTGGGAAAGTGCACTGATCGCATGCGAAAGCTTGCACCAGATATCAGAAAACATGAAGGTGATGAAAACGATTGCGGCGAAGAAGGAAGTGCTGTATAGCGGAATCA-TTGCGCTGAACGAAGAGATTGATACTTTTGGGCAAGAG-ATTCGACAAACGGTAGCGGAGGTGCTTGACCGCACACCGC-TCGTGCTATTGCCCTGCAAAACGCCGGCTCGCGTTGTGGCCATGCGACAGCAGTACCTGTCGTCCTCGGTCGGCGCCGGC-TACGTTGA-CCCTGACTCGGTACAGCCCGC-GCTCGG-TGGCGGCCATTTTACCTCAAACTTGGTAGCAGCCAACAAAACGGTCAACATTGAAGCTGCCAGCAGCAAACCAAAGACGGTGGTGGTCGGTACCGCATCCAACCATCAGCCTCCGGCGTCCGGTACGTCCGGTAGTAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTCGGCCTCGGGCCTCGGTTCGACTACAACAACATCTTCGATGCGCAATCGCTGGACGGGCTGGCCACGCCGGACGATCTGGCGACGGATTCATCCGCGGGNATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGGCGGCGAGAAACAGCACNTGCCGGAGGGGACTNTTTGGACGCCAACGGGGCCACCGTTTTAAAAGCCCGGGTTCCCAGGGCCGGTACCCGATTGAAACCGAACGAAAACCGGCCCAATACAACACCGGTTTGAATCTGGGAACGNCAGTTTGGATCCC] [+] EMBL BX466614 [CCAGAATCGCCACGAGNTNATAAACATTTCGGCCGAGTCGCTCTCGTTGACGCAGGCCGAGTTCGATAGTTTCATGTCGGGCGAGCACGAGGGCACGTCGGCGTGGGAAAGTGCACTGATCGCATGCGAAAGCTTGCACCAGATATCAGAAAACATGAAGGTGATGAAAACGATTGCGGCGAAGAAGGAAGTGCTGTATAGCGGAATCA TTGCGCTGAACGAAGAGATTGATACTTTTGGGCAAGAG ATTCGACAAACGGTAGCGGAGGTGCTTGACCGCACACCGCGTCGTGCTATTGCCCTGCAAAACGCCGGCTCGCGTTGTGGCCATGCGACAGCAGTACCTGTCGTCCTCGGTCGGCGCCGGCATACGTTGAGCCCTGACTCGGTACAGACCGCAGCTCGGATGGCngg ] [+] EMBL CNS09GB7 [ GCCGAGTCGCTCTCGTTGACGCAGGCCGAGTTCGATAGTTTCATGTCGGGCGAGCACGAGGGCACGTCGGCGTGGGAAAGTGCACTGATCGCATGCGAAAGCTTGCACCAGATATCAGAAAACATGAAGGTGATGAAAACGATTGCGGCGAAGAAGGAAGTGCTGTATAGCGGAATCA TTGCGCTGAACGAAGAGATTGATACTTTTGGGCAAGAGCATTCGACAAACGGTAGCGGAGGTGCTTGACCGCACACCGC TCGTGCTATTGCCCTGCAAAACGCCGGCTCGCGTTGTGGCCATGCGACAGCAGTACCTGTCGTCCTCGGTCGGCGCCGGC TACGTTGA CCCTGACTCGGTACAGCCCGC GCTCGG TGGCGGCCATTTTACCTCAAACTTGGTAGCAGCCAACAAAACGGTCAACATTGAAGCTGCCAGCAGCAAACCAAAGACGGTGGTGGTCGGTACCGCATCCAACCATCAGCCTCCGGCGTCCGGTACGTCCGGTAGTAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCT ] [+] EMBL BX467620 [ gcagaATCGCCACG AGGAGGAAGTGCTGTATAGCGGAATCACTTGCGCTGAACGAAGAGATTGATACTTTTGGGCAAGAG ATTCGACAAACGGTAGCGGAGGTGCTTGACCGTACGCCGC TCGTGCTATTGCCCTGCAAAACGCCGGCTCGCGTTGTGGCCATGCGACAGCAGTATCTGTCGTCCTCGGTCGGAGCCGGC TACGTTGA CCCTGACTCGGTACAGCCCGC GCTCGG TGGCGGCCATTTTACCTCAAACTTGGTAGCAGCCAACAAAACGGTCAACATTCAAGCTGCCAGCAGCAAACCAAAGACGGTGGTGGTCGGTACCGCATCCAACCATCAGCCTCCGGC A TCCGGTAGCAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTACTGTCGGCCTCGGGCCTCGGTTCGACTACAACAACATCTTCGATGCGCAATCGCTGGACGGGCTGGCCACGCCGGACGATCTGGCGACGGATTCATCCGCGGGNATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGGCGGCGAGAAACAGCACNTGCCGGAGGGGACTNTTTGGACGCCAACGGGGCCACCGTTTTAAAAGCCCGGGTTCCCAGGGCCGGTACCCGATTGAAACCGAACGAAAACCGGCCCAATACAACACCGGTTTGAATCTGGGAACGNCAGTTTGGATCCC] consensusID : consensus_7600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 973 fasta sequence [TAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTCGGCCTCGCCCTCGTTCGACTACAACAACATCTTCGATGCGCAATCGCTGGACGGGCTGGCCACGCCGGACGATCTGGC-GACGGATTTCATCCGCGGCATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGCGGGGAGAACAGCACGGCGGAGGACTTTGACCCGCGGGCCACGTTTAAACCGGTCCCGGCCGTACCGACGGAACCGACGAAACCGCCCATCACACCGTTCGATCTGGAAGAGTTTGATCCGCTGCTGCAGAAGGACGGGGCCGGCTCGACTGGTCAGCGTCCGGCGGAACCGTTGCTACCGCTACCGTTACAGCCATCGACGGTAGTGGCGAGTGGGGGTGCCGGTACCGGCGGTGGCAGTCTGCTGGATGATTCTCCCGGCTCACTGATGCTGGAGTCGCCGCTGAAACCGACCGTCGCCGACTTCCACGGGTTATCGCTGCACGGGTGCAACATTCCGACGATAACGTGCGCGACCGGCGTTCTACATCCTCCACCGGCCGGCGGTGGTGGTGGGAGCGGTGGGAGTGGACAGAATGGGCCAAAGGCTACGTCGAGCGGTCGGAACGCTAACAATGACACTAGCTTAATCTAGACCGGTGCAAACGAAAGGGGACGTTGGCGTTGATAGTGACTTGTTATTGTATATTGTTTGCAGCAGTGCGGAAGCACAGTGGACGGTTAAGATAAAAATGGAACAAAAATTGTTTGTTATTTGTTTAGTACAAGAAGAAGAAGGAGAAGAAGAAAAAAAATAAACACACTTATTTGCTAATTCAATCGAAAAAAAAAAAAAAAA] [+] EMBL BX612697 [TAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTCGGCCTCGCCCTCGTTCGACTACAACAACATCTTCGATGCGCAATCGCTGGACGGGCTGGCCACGCCGGACGATCTGGC GACGGATTTCATCCGCGGCATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGCGGGGAGAACAGCACGGCGGAGGACTTTGACCCGCGGGCCACGTTTAAACCGGTCCCGGCCGTACCGACGGAACCGACGAAACCGCCCATCACACCGTTCGATCTGGAAGAGTTTGATCCGCTGCTGCAGAAGGACGGGGCCGGCTCGACTGGTCAGCGTCCGGCGGAACCGTTGCTACCGCTACCGTTACAGCCATCGACGGTAGTGGCGAGTGGGGGTGCCGGTACCGGCGGTGGCAGTCTGCTGGATGATTCTCCCGGCTCACTGATGCTGGAGTCGCCGCTGAAACCGACCGTCGCCGACTTCCACGGGTTATCGCTGCACGG ] [-] EMBL CNS09GB8 [ TGGACGGGCTGGCCACGCCGGACGGTCTGGCGGAC GATTTCATCCGCGGCATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGCGGGGAGAACAGCACGGCGGAGGACTTTGACCCGCGGGCCACGTTTAAACCGGTCCCGGCCGTACCGACGGAACCGACGAAACCGCCCATCACACCGTTCGATCTGGAAGAGTTTGATCCGCTGCTGCAGAAGGACGGGGCCGGCTCGACTGGTCAGCGTCCGGCGGAACCGTTGCTACCGCTACCGTTACAGCCATCGACGGTAGTGGCGAGTGGGGGTGCCGGTACCGGCGGTGGCAGTCTGCTGGATGATTCTCCCGGCTCACTGATGCTGGAGTCGCCGCTGAAACCGACCGTCGCCGACTTCCACGGGTTATCGCTGCACGGGTGCAACATTCCGACGATAACGTGCGCGACCGGCGTTCTACATCCTCCACCGGCCGGCGGTGGTGGTGGGAGCGGTGGGAGTGGACAGAATGGGCCAAAGGCTACGTCGAGCGGTCGGAACGCTAACAATGACACTAGCTTAATCTAGACCGGTGCAAACGAAAGGGGACGTTGGCGTTGATAGTGACTTGTTATTGTATATTGTTTGCAGCAGTGCGGAAGCACAGTGGACGGTTAAGATAAAAATGGAACAAAAATTGTTTGTTATTTGTTTAGTACAAGAAGAAGAAGGAGAAGAAGAAAAAAAATAAACACACTTATTTGCTAATTCAATCGAAAAAAAAAAAAAAAA] [-] EMBL BX611610 [ cCCGGCGGTGGTGGTGGGAGCGGTGGGAGTGGACAGAATGGGCCAAAGGTTACGTCGAGCGGTCGGAACGCTAACAATGACACTAGCTTAATCTAGACCGGTGCAAACGAAAGGGGACGTTGGCGTTGATAGTGACTTGTTATTGTATATTGTTTGCAGCAGTGCGGAAGCACAGTGGACAGTTAATATAAAAATGGAACAAAAATTGTTTGTTATTTGTTTAGTACAAGAAGAAGAAGGAGAAGAAGAAAAAAAATAAACACACTTATT ] consensusID : consensus_7600#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [TTTTTCGATTGAATTAGCAAACAAGTGTGTTTATTTCCTCCTTCTTCTTCTTCTTGTACTAAACAAATAACAAACAATTTTTGTTCCATTTTTATCTTAACCGTCCACTGTGCTTCCGCACTGCTGCAAACAATATACAATAACAAGTCACTATCAACGCCAACGTCCCCTTTCGTATGCACCGGTCTAGATTAAGCTAGTGTCATTGTTAGCGTTCCGACCGCTCGACGTAGCCTTTGGCCCATTCTGTCCACTCCCACCGCTCCCACCACCACCGCCAGCCGGTGTAGGATGTAGAACGCCGGTCGCGCACGTTATCGTCGGAATGTTGCACCCGTGCAGCGATAACCCGTGGAAGTCGGCGACGGTCGGTTTCAGCGGCGACTCCAGCATCAGTGAGCCGGGAGAATCATCCAGCAGACTGCCACTGCCAGCACCGGCAGCCCCACTCGCCACTACCGTCGATGGCTGTAACGGTAGCGGTAGCAACGGTTCCGCCGGACGCTGACCAGTCGATCCGGCCCCGTCCTTTTGCAGCAGCGGATCAAACTCTTCCAGATCGAACGGTGTGATGGGCGGTTTCGTCGGTTCCGTCGGTACGGCCGGGACCGGTTTAAACGTGACCCGCGGGTCAAAGTCCTCCGCCGTGCTGTTCTCCCCGCTGTGGTCGGAAAAGTCAAAGTCCCAGTAGGCCAACAGTGCT] [+] EMBL CNS091LP [TTTTTCGATTGAATTAGCAAACAAGTGTGTTTATTTCCTCCTTCTTCTTCTTCTTGTACTAAACAAATAACAAACAATTTTTGTTCCATTTTTATCTTAACCGTCCACTGTGCTTCCGCACTGCTGCAAACAATATACAATAACAAGTCACTATCAACGCCAACGTCCCCTTTCGTATGCACCGGTCTAGATTAAGCTAGTGTCATTGTTAGCGTTCCGACCGCTCGACGTAGCCTTTGGCCCATTCTGTCCACTCCCACCGCTCCCACCACCACCGCCAGCCGGTGTAGGATGTAGAACGCCGGTCGCGCACGTTATCGTCGGAATGTTGCACCCGTGCAGCGATAACCCGTGGAAGTCGGCGACGGTCGGTTTCAGCGGCGACTCCAGCATCAGTGAGCCGGGAGAATCATCCAGCAGACTGCCACTGCCAGCACCGGCAGCCCCACTCGCCACTACCGTCGATGGCTGTAACGGTAGCGGTAGCAACGGTTCCGCCGGACGCTGACCAGTCGATCCGGCCCCGTCCTTTTGCAGCAGCGGATCAAACTCTTCCAGATCGAACGGTGTGATGGGCGGTTTCGTCGGTTCCGTCGGTACGGCCGGGACCGGTTTAAACGTGACCCGCGGGTCAAAGTCCTCCGCCGTGCTGTTCTCCCCGCTGTGGTCGGAAAAGTCAAAGTCCCAGTAGGCCAACAGTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7600#0 --------CCAGAATCGCCACG-AGNTNATAAACATTTCGGCCGAGTCGCTCTCGTTGAC 51 consensus_7600#1 TAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCC 60 consensus_7600#2 ------------------------------------------------------------ consensus_7600#0 GCAGGCCGAGTTCGATAGTTTCATGTCGGGCGAGCACGAGGGCACGTCGGCGTGGGAAAG 111 consensus_7600#1 GCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGG 120 consensus_7600#2 ------------------------------------------------------------ consensus_7600#0 TGCACTGATCGCATGCGAAAGCTTGCACCAGATATCAGAAA-ACATGAAGGTGATGAAAA 170 consensus_7600#1 TACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTCGGCCTCGCCCTCGTTCGACTACAA 180 consensus_7600#2 ------------------------------------------------------------ consensus_7600#0 CGATTGCGGCGAAGAAGGAAGTGCTGTATAGCGGAATCATTGCGCTGAACGAAGAGATTG 230 consensus_7600#1 CAACATCTTCGATGC-GCAATCGCTG---GACGGGCTGGCCACGCCGGACGATCTGGCGA 236 consensus_7600#2 ------------------------------------------------------------ consensus_7600#0 ATACTTTTGGGCAAGAGATTCGACAAA-CGGTAGCGGAGGTG-CT-TGACCGCACACCGC 287 consensus_7600#1 CGGATTTCATCCGCGGCATACGCAACATCAACTACGACTTTGACT-TTTCCGACCACAGC 295 consensus_7600#2 ------TTTTTCGATTGAATTAGCAAA-------CAAGTGTGTTTATTTCCTCCTTCTTC 47 * * * * * * ** * * ** * * consensus_7600#0 TCGTGCTATTGCCCTGCAAA--ACGC-CGGCTCGCGTTGTGGCCATGCG-ACAGCAGTAC 343 consensus_7600#1 GGGGAGAACAGCACGGCGGAGGACTT-TGACCCGCG----GGCCACGTTTAAACCGGTCC 350 consensus_7600#2 TTCTTCTTGTACTAAACAAATAACAAACAATTTTTGTTCCATTTTTATCTTAACCGTCCA 107 * * * ** * * * consensus_7600#0 CTGTCGTCCTCGGTCGGCGCCGGCTACGTTGACCCTGACTCGGTACAGCCCGCGCTCG-G 402 consensus_7600#1 CGGCCGTACC--GACGGAACCGACGAAACCGCCCATCACAC-----------CGTTCG-A 396 consensus_7600#2 CTGTGCTTCCGCACTGCTGCAAACAATAT--ACAATAACAAGTCACTATCAACGCCAACG 165 * * * * * * * * * * ** ** consensus_7600#0 TGGCGGCCATTTTACCTCAAACTTGGTAGCAGCCAACAAAACGGTCAACATTGAAGCTGC 462 consensus_7600#1 TCTGGAAGAGTTTGATCCG----CTGCTGCAG--AAGGACGGGGCCGGC--TCGACTGGT 448 consensus_7600#2 TCCCCTTTCGTATGCACCGGTCTAGATTA-AGCTAGTGTCATTGTTAGCGTTCCGACCGC 224 * * * * ** * * * * * consensus_7600#0 CAGCAGCAAACCAAAGACGGTGGTGGTCGGTACCGCA--TCCAACCATCAGCCTCCGGCG 520 consensus_7600#1 CAGCGTCCGGC--GGAACCGTTGCTACCGCTACCGT---TACAGCCATC-------GACG 496 consensus_7600#2 TCGACGTAGCCTTTGGCCCATTCTGTCCACTCCCACCGCTCCCACCACCA----CCGCCA 280 * * * * * * ** * * *** * * * consensus_7600#0 TCCGGTACGTCCGGTAGTAGCGCGGCCGGCGAGGTAGAACAGCTGG-TGCAAAGTCTGTC 579 consensus_7600#1 GTAGTGGCGAGTGGGGGTGCCGGTACCGGCGGTGGCAGTCTGCTGGATGATTCTCCCGGC 556 consensus_7600#2 GCCGGTGTAGGATGTAG-AACGCCGGTCGCGCACGTTATCGTCGGAATGTTGCACCCGTG 339 * * * ** *** * * * ** * * consensus_7600#0 CAAC---ACGCTGACGACGCCGCTGGTG-TCGGTCGATGCGGGG--CCGCCGGAAACGGT 633 consensus_7600#1 TCACTG-ATGCTGGAGTCGCCGCTGAAA-CCGACCGTCGCCGACTTCCACGGGTTATCGC 614 consensus_7600#2 CAGCGATAACCCGTGGAAGTCGGCGACGGTCGGTTTCAGCGGCG--ACTCCAGCATCAGT 397 * * * * * * ** * ** ** * * * * * consensus_7600#0 CGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTC 693 consensus_7600#1 TGCACGGGTGCAACATTCCGACGATA--ACGTGCGCGACCGGCGTTCTACATCCTCCACC 672 consensus_7600#2 GAGCCGGGAG-AATCATCCAGCAG-ACTGCCACTGCCAGCA--CCGGCAGCCCCACTCGC 453 * * * * * * * * ** * * * * * consensus_7600#0 GGCCTCGGGCCTCGGTTCGA-CTACAACAACATCTTCGATGC-GC-AATCGCTGGACGGG 750 consensus_7600#1 GGCCGGCGGTGGTGGTGGGAGCGGTGGGAGTGGACAGAATGG-GCCAAAGGCTACGTCGA 731 consensus_7600#2 CACTACCGTCGATGGCTGTAACGGTAGCGGTAGCAACGGTTCCGCCGGACGCTGACCAGT 513 * * ** * * * ** *** * consensus_7600#0 CTGGCCACGCCGGACGATCTG--GCGACGGATTCATCCG---CGG-GNATACGCAA---- 800 consensus_7600#1 GCGGTCGGAACGCTAACAATG--ACACTAGCTTAATCTAGACCGGTGCAAACGAAAGGGG 789 consensus_7600#2 CGATCCGGCCCCGTCCTTTTGCAGCAGCGGATCAAACTCTTCCAGATCGAACGG------ 567 * * ** * * * * * * * *** consensus_7600#0 -CATCAACTACGACTTTGACTTTTCCGACCACAGGCGGCGAGAAACAGCACNTGC-CGGA 858 consensus_7600#1 ACGTTGGCGTTGATAGTGACTTGTT--ATTGTATATTGTTTGCAGCAGTGCGGAAGCACA 847 consensus_7600#2 -TGTGATGGGCGGTTTCGTCGGTTCCGTCGGTA--CGGCCGGGACCGGT--TTAAACGTG 622 * * * * * * * * * * * * consensus_7600#0 GGGGACTNTTTGGACGCCAACGGGGCCACCGTTTTAAAAGCCCGGGTTCCCAGGGCCGGT 918 consensus_7600#1 GTGGACGGTTAAGATAAAAATGGAACAAAAATTGTTTGTTATTTGTTTAGTACAAGAAGA 907 consensus_7600#2 ACCCGCGGGTCAAAGTCCTCCGCCGT-GCTGTTCTCCCCGCTGTGGTCGGAAAAGTCAAA 681 * * * * ** * * * * consensus_7600#0 ACCCGATTGAAACCGAACGAAAACCGGCCCAATACAACACCGGTTTGAATCTGGGAACGN 978 consensus_7600#1 AGAAGGA-GAAGAAGAAAAAAAATAAACACACTTATTTGCTAATTC-AATCGAAAAAAAA 965 consensus_7600#2 GTCCCA--GTAGGCCAACAGTGCT------------------------------------ 703 * * ** consensus_7600#0 CAGTTTGGATCCC 991 consensus_7600#1 AAAAAAAA----- 973 consensus_7600#2 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||