These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2251 fasta sequence [TAACCTAGAGAACAAGCATGCGCCCGCCGCAACCCCCTTTTTCTCTGATTTCGCGTCTTTCATGAATGCCTCACAATGCATATTACTCCATTCACGATCACTATTTATATTTCGAAAGTGTGTTATTATTGTGAGAGCCGCTTATTTTAACCACCAGACGCACCAGATTTCTTCGTACGTTCGTTCGGCGCACGCAATTGCAAAAACTAAACAAACACCACCACATGCCCGGGCCGCACACTTACAACGCGCGATATCCATCACTTACTTGCTAACTGATCATTTGCATTTGCTTTCTTACTTACAAACGGGCGTACACCACACTCCCCCTTCGTTCTTCGTCCTCTTTTTCGGGCCATCTGTTCCCTCATCTTTACTATTATTATCAATCCTACGGGCTGCTCCTCTACGATCGTTGCGGGTTTACCTGTGTTAATGGCTAATATTAGTGTATCTTCTTTTACAGTTTTACATAGCGCGATTCTGATTACTGTGTTTTACCCCC--CCTCTTCTTTTGTTATTATCAAACTCACGTGAGCTACTGCTACTGCTGCCGATTTTAAACTCGTGTGCTTCTCTCGTCGTTATACTACAGCCGAGCGACCGTTGGACCGCAATTTACACACAACCTTCATACATCCTTTCTTCGAAGTCGGGCCACAAATTATGATCAGAAACTGCCGTGTTACTTGCCGAGCGTATGTGTGTGGGTGCTCCTATTCTCCTACCAAACATTACCAGTTCTTTGTGATGATAGATGAACTCACCATTC----CTCTCTCTCTCGCGCGCGTGTGTTTAGCCTTATACGCGTTCTTGGGGAAGTGGAAAAGTCACCGCGAAACGATCGGATGGTTGGATTTCATGAAAGAAAGATTAAAATATGTTCACCAACAGGCAAACCAGTTCGTGTGTTGAATTATTTCAATTGCACTCGATATTGTGGTTGCTTTAATGAAGACTCAAAGTAAAATGCGGTACACCAAATGGTACAGATAGTCCAGGCCAATTTCTATTATTTCTCGCTCTTACGACCAGCTGCTACGGCGTGATGTGATGTACGTAATTCGGTTCGTGGTCGGTTTTGTAATGTTAGTGCTACACAAGCTTTGCTATCGATCGATCGAAGAAATTAACCAGCTCGAAGGTGGTGCATCATGCGACAGAAACGAATGTAAATCATAACACGTCAAATAAAATCGTGCCCGACATGGCGGCTATGTGGGATATTTCAGTATGGAGCGATCCGATGCATGCGGCCGTCGTGTTGGTGCGTACGTTGTAAACAAGCGTGAACAGAGTAGTGGGGGGAGGATACGTTGCAGAAAAGACGACGGGATGACGTTGACGACGTTTCTCGATTAGAAATTGAAGTAAGGCGCTAACTGAAGGATCAGACGTAGTCAATGTTGCTGTTGTTGAGCAAGTATATCGTCCACGCTAACGAACGCGCACGCACCGAGCGATGAGCTCGACATGAGGCGCAGCAGCTCGCAGGCGTGCGCTATGCACACCTCTAGCGGTGGTCGCCATGAGTAATTCATTGATTCTAATATGGCAGAGTTTAGAGCAGCACATACAGCTTCACGACGCGACGGGCACAGTTGCCACCCGAGCGGACTTGCCCATGGATTCGAATAGGCTAATAAACTAAATGCATCCTCTAACATTTTTTGATTAGTTTCATTAACACCATGTTCCTTCTCCAGTCGTTGGCTCATCTGGAACAGTTCGCGACCGAACTCTAGCATCCGCTCGACACCCGATTTTGCCGTGGCACTCGTCGATTTACAGTTTGGCGATAGCGATGAGTCCACGTCCATATCTTCATCCCGGCCGGTGTCCGCCTCTTCCTCTTCCTCTTCTACCAGTTCGTTCGTGTTCGTTCGATTGGCGGCACTGCCG-TTTTTGTAACCATTCGTGGCGCTATTATTGCTGTGGCCGTTCTCCATCTCGACGTCGTTCGAGTAGTCGTCTTCGATGCAGCTGCCATTATTGTTGTTGGTGTTATTACTGAGGACGTTATTTTTTAAGTATCCCTGATTGTCAGCATCATCCGGAATAATGGTGTTACCGTTTTGATAACTTTTTGTTGATTGTATCACCGATGTTTGCACGGGGCTCGTACGCGACGAAGGAGTACCTAGGTCAAAGTCAGATCCGTTCACCATCTCGATAAACTGTCGGCACTTTAGCATAAACAGCAGATTTTGATTCGACTCTAGCAGACCCGGATAGAGACGAATGGTCTGTT] [-] EMBL BM654600 [TAACCTAGAGAACAAGCATGCGCCCGCCGCAACCCCCTTTTTCTCTGATTTCGCGTCTTTCATGAATGCCTCACAATGCATATTACTCCATTCACGATCACTATTTATATTTCGAAAGTGTGTTATTATTGTGAGAGCCGCTTATTTTAACCACCAGACGCACCAGATTTCTTCGTACGTTCGTTCGGCGCACGCAATTGCAAAAACTAAACAAACACCACCACATGCCCGG ] [-] EMBL BX622191 [ CACCAGACGCACCAGATTTCTTCGTACGTTCGTTCGGCGCACGCAATTGCAAAAACTAAACAAACACCACCACATGCCGTCGCCGCACACTTACAACGCGCGATATCCATCACTTACTTGCTAACTGATCATTTGCATTTGCTTTCTTACTTACAAACGGGCGTACACCACACTCCCCCTTCGTTCTTCGTCCTCTTTTTCGGGCCATCTGTTCCCTCATCTTTACTATTATTATCAATCCTACGGGCTGCTCCTCTACGATCGTTGCGGGTTTACCTGTGTTAATGGCTAATATTAGTGTATCTTCTTTTACAGTTTTACATAGCGCGATTCTGATTACTGTGTTTTACCCCC CCTCTTCTTTTGTTATTATCAAACTCACGTGAGCTACTGCTACTGCTGCCGATTTTAAACTCGTGTGCTTCTCTCGTCGTTATACTACAGCCGAGCGACCGTTGGACCGCAATTTACACACAACCTTCATACATCCTTTCTTCGAAGTCGGGCCACAAATTATGATCAGAAACTGCCGTGTTACTTGCCGAGCGTATGTGTGTGGGTGCTCCTATTCTCCTACCAAACATTACCAGTTCTTTGTGATGATAGATGAACTCACCATTCCTCTCTCTCTCTCTCGCGCGCGTGTGTTTAGCCTTATACGCGTTCTTGGGGAAGTGGAAAAGTCACCGCGAAACGATCGGATGGTTGGATT ] [-] EMBL BM603250 [ CATTTGCTTTCTTACTTACAAACGGGCGTACATCACCCTCCGCCTTCATCCTTCGTCCTCTTTTTCGGTCCATCTGTTCCCTCATCCTTACTATTATTATCAATCCTACGGGCTGCTCCTCTACGATCGTTGCGGGTTTACCTGTGTTAATGGCTAATATTAGTGTATCTTCTTTTACAGTTTTACATAGCGCGATTCTGATTACAGTGTTTTACCCCCCTCCTCTTCTTTTGTTATTATCAAACTCACGTGAGCTACTGCTACTGCTGCCGCTTTTAAACTCGTGTGCTTCTCTCGTCGTTATACTACAGCCGAGCGACCGTTGGACCGCAATTTACACACAACCTTCACACATCCTTTCTTCGAAATCGGGCCACAAATTATGATCAGAAACTGCCGTGTTACTTGCCGAGCGTATGTGTGTGGGTGCTCCTATTCTCCTACCAAACATTACCAGTTCTTTGTGATGATAGATGAACTCACCATTC CTCTCGCTCTCGCGCGCGTGTGTTTAGCCTTAGACGCGTTCTTGGGGAAGTGGAAAAGTCACCGCGAAACGATCGGATGGTTGGATTTCATGAAAGAAAGATTAAAATATGTTCACCAACAGGCAAACCAGTTCGTGTGTTGAATTATTTCAATTGCACTCGATATTGTGGTTGCTTTAATGAAGACTCAAAGTAAAATGCGG ] [+] EMBL BM605110 [ TTCAATTGCACTCGATATTGTGGTTGCTTTAATGAAGACTCAAAGTAAAATGTTTTACACCAAATGGTACAGATAGTCCAGGCCAATTTCTATTATTTCTCGCTCTTACGACCAGCTGCTACGGCGTGATGTGATGTACGTAATTCGGTTCGTGGTCGGTTTTGTAATGTTAGTGCTACACAAGCTTTGCTATCGATCGATCGAAGAAATTAACCAGCTCGAAGGTGGTGCATCATGCGACAGAAACGAATGTAAATCATAACACGTCAAATAAAATCGTGCCCGACATGGCGGCTATGTGGGATATTTCAGTATGGAGCGATCCGATGCATGCGGCCGTCGTGTTGGTGCGTACGTTGTAAACAAGCGTGAACAGAGTAGTGGGGGGAGGATACGTTGCAGAAAAGACGACGGGATGACGTTGACGACGTTTCTCGATTAGAAATTGAAGTAAGGCGCTAACTGAAGGATCAGACGTAGTCAATGTTGCTGTTGTTGAGCAAGTATATCGTCCACGCTAACGAACGCGCACGCACCGAGCGATGAGCTCGACATGAGGCGCAGCAGCTCGCAGGCGTGCGCTATGCACACCTCTAGCGGTGGTCGCCATGAGTAATTCATTGATTCTAATATG ] [-] EMBL BM633739 [ AGCAAGTATATCGTCCACGCTAACGAACGCGCACGCACCGAGCGATGAGCTCGACATGAGGCGCAGCAGCTCGCAGGCGTGCGCTATGCACACCTCTAGCGGTGGTCGCCATGAGTAATTCATTGATTCTAATATGGCAGAGTTTAGAGCAGCACATACAGCTTCACGACGCGACGGGCACAGTTGCCACCCGAGCGGACTTGCCCATGGATTCGAATAGGCTAATAAACTAAATGCATCCTCTAACATTTTTTGATTAGTTTCATTAACACCATGTTCCTTCTCCAGTCGTTGGCTCATCTGGAACAGTTCGCGACCGAACTCTAGCATCCGCTCGACACCCGATTTTGCCGTGGCACTCGTCGATTTACAGTTTGGCGATAGCGATGAGTCCACGTCCATATCTTCATCCCGGCCGGTGTCCGCCTCTTCCTCTTCCTCTTCTACCAGTTCGTTCGTGTTCGTTCGATTGGCGGCACTGCCG TTTTTGTAACCATTCGTGGCGCTATTATTGCTGTGGCCGTTCTCCATCTCGACGTCGTTCGAGTAGTCGTCTTCGATGCAGCTGCCATTATTGTTGTTGGTGTTATTACTGAGGACGTTATTTTTTAAGTATCCCTGATTGTCAGCATCATCCGGAATAATGGTGTTACCGTTTTGATAACTTTTTGTTGATTGTATCACCGATGTTTGCACGG ] [+] EMBL CNS08Y2Q [ GTGCGCTATGCACACCTCTAGCGGTGGTCGCCATGAGTAATTCATTGATTCTAATATGGCAGAGTTTAGAGCAGCACATACAGCTTCACGACGCGACGGGCACAGTTGCCACCCGAGCGGACTTGCCCATGGATTCGAATAGGCTAATAAACTAAATGCATCCTCTAACATTTTTTGATTAGTTTCATTAAGACCATGTTCCTTCTCCAGTCGTTGGCTCATCTGGAACAGTTCGCGACCGAACTCTAGCATCCGCTCGACACCCGATTTTGCCGTGGCACTCGTCGATTTACAGTTTGGCGATAGCGATGAGTCCACGTCCATATCTTCATCCCGGCCGGTGTCCGCCTCTTCCTCTTCCTCTTCTACCAGTTCGTTCGTGTTCGTTCGATTGGCGGCACTGCCGTTTTTTGTAACCATTCGTGGCGCTATTATTGCTGTGGCCGTTCTCCATCTCGACGTCGTTCGAGTAGTCGTCTTCGATGCAGCTGCCATTATTGTTGTTGGTGTTATTACTGAGGACGTTATTTTTTAAGTATCCCTGATTGTCAGCATTATCCGGAATAATGGTGTTACCGTTTTGATAACTTTTTGTTGATTGTATCACCGATGTTTGCACTGGGCTCGTACGCGACGAAGGAGTACCTAGGTCAAAGTCAGATCCGTTCACCATCTCGATAAACTGTCGGCACTTTAGCATAAACAGCAGATTTTGATTCGACTCTAGCAGACCCGGATAGAGACGAATGGTCTGTT] consensusID : consensus_7605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [ACATACAGCTTCACGACGCGACGGGCACAGTTGCCACCCGAGCGGACTTGCCCATGGATTCGAATAGGCTAATAAACTAAATGCATCCTCTAACATTTTTTGATTAGTTTCATTAACACCATGTTCCTTCTCCAGTCGTTGGCTCATCTGGAACAGTTCGCGACCGAACTCTAGCATCCGCTCGACACCCGATTTTGCCGTGGCACTCGTCGATTTACAGTTTGGCGATAGCGATGAGTCCACGTCCATATCTTCATCCCGGCCGGTGTCCGCCTCTTCCTCTTCCTCTTCTACCAGTTCGTTCGTGTTCGTTCGATTGGCGGCACTGCCGTTTTTGTAACCATTCGTGGCGCTATTATTGCTGTGGCCGTTCTCCATCTCGACGTCGTTCGAGTAGTCGTCTTCGATGCAGCTGCCATTATTGTTGTTGGTGTTATTACTGAGGACGTTATTTTTTAAGTATCCCTGATTGTCAGCATTATCCGATAATGGTGTACCGTTTGATACTTNACTCGGGCGATC] [-] EMBL AL932517 [ACATACAGCTTCACGACGCGACGGGCACAGTTGCCACCCGAGCGGACTTGCCCATGGATTCGAATAGGCTAATAAACTAAATGCATCCTCTAACATTTTTTGATTAGTTTCATTAACACCATGTTCCTTCTCCAGTCGTTGGCTCATCTGGAACAGTTCGCGACCGAACTCTAGCATCCGCTCGACACCCGATTTTGCCGTGGCACTCGTCGATTTACAGTTTGGCGATAGCGATGAGTCCACGTCCATATCTTCATCCCGGCCGGTGTCCGCCTCTTCCTCTTCCTCTTCTACCAGTTCGTTCGTGTTCGTTCGATTGGCGGCACTGCCGTTTTTGTAACCATTCGTGGCGCTATTATTGCTGTGGCCGTTCTCCATCTCGACGTCGTTCGAGTAGTCGTCTTCGATGCAGCTGCCATTATTGTTGTTGGTGTTATTACTGAGGACGTTATTTTTTAAGTATCCCTGATTGTCAGCATTATCCGATAATGGTGTACCGTTTGATACTTNACTCGGGCGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7605#0 TAACCTAGAGAACAAGCATGCGCCCGCCGCAACCCCCTTTTTCTCTGATTTCGCGTCTTT 60 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CATGAATGCCTCACAATGCATATTACTCCATTCACGATCACTATTTATATTTCGAAAGTG 120 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TGTTATTATTGTGAGAGCCGCTTATTTTAACCACCAGACGCACCAGATTTCTTCGTACGT 180 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TCGTTCGGCGCACGCAATTGCAAAAACTAAACAAACACCACCACATGCCCGGGCCGCACA 240 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CTTACAACGCGCGATATCCATCACTTACTTGCTAACTGATCATTTGCATTTGCTTTCTTA 300 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CTTACAAACGGGCGTACACCACACTCCCCCTTCGTTCTTCGTCCTCTTTTTCGGGCCATC 360 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TGTTCCCTCATCTTTACTATTATTATCAATCCTACGGGCTGCTCCTCTACGATCGTTGCG 420 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 GGTTTACCTGTGTTAATGGCTAATATTAGTGTATCTTCTTTTACAGTTTTACATAGCGCG 480 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 ATTCTGATTACTGTGTTTTACCCCCCCTCTTCTTTTGTTATTATCAAACTCACGTGAGCT 540 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 ACTGCTACTGCTGCCGATTTTAAACTCGTGTGCTTCTCTCGTCGTTATACTACAGCCGAG 600 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CGACCGTTGGACCGCAATTTACACACAACCTTCATACATCCTTTCTTCGAAGTCGGGCCA 660 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CAAATTATGATCAGAAACTGCCGTGTTACTTGCCGAGCGTATGTGTGTGGGTGCTCCTAT 720 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TCTCCTACCAAACATTACCAGTTCTTTGTGATGATAGATGAACTCACCATTCCTCTCTCT 780 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CTCGCGCGCGTGTGTTTAGCCTTATACGCGTTCTTGGGGAAGTGGAAAAGTCACCGCGAA 840 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 ACGATCGGATGGTTGGATTTCATGAAAGAAAGATTAAAATATGTTCACCAACAGGCAAAC 900 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CAGTTCGTGTGTTGAATTATTTCAATTGCACTCGATATTGTGGTTGCTTTAATGAAGACT 960 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CAAAGTAAAATGCGGTACACCAAATGGTACAGATAGTCCAGGCCAATTTCTATTATTTCT 1020 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CGCTCTTACGACCAGCTGCTACGGCGTGATGTGATGTACGTAATTCGGTTCGTGGTCGGT 1080 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TTTGTAATGTTAGTGCTACACAAGCTTTGCTATCGATCGATCGAAGAAATTAACCAGCTC 1140 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 GAAGGTGGTGCATCATGCGACAGAAACGAATGTAAATCATAACACGTCAAATAAAATCGT 1200 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 GCCCGACATGGCGGCTATGTGGGATATTTCAGTATGGAGCGATCCGATGCATGCGGCCGT 1260 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 CGTGTTGGTGCGTACGTTGTAAACAAGCGTGAACAGAGTAGTGGGGGGAGGATACGTTGC 1320 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 AGAAAAGACGACGGGATGACGTTGACGACGTTTCTCGATTAGAAATTGAAGTAAGGCGCT 1380 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 AACTGAAGGATCAGACGTAGTCAATGTTGCTGTTGTTGAGCAAGTATATCGTCCACGCTA 1440 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 ACGAACGCGCACGCACCGAGCGATGAGCTCGACATGAGGCGCAGCAGCTCGCAGGCGTGC 1500 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 GCTATGCACACCTCTAGCGGTGGTCGCCATGAGTAATTCATTGATTCTAATATGGCAGAG 1560 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TTTAGAGCAGCACATACAGCTTCACGACGCGACGGGCACAGTTGCCACCCGAGCGGACTT 1620 consensus_7605#1 -----------ACATACAGCTTCACGACGCGACGGGCACAGTTGCCACCCGAGCGGACTT 49 ************************************************* consensus_7605#0 GCCCATGGATTCGAATAGGCTAATAAACTAAATGCATCCTCTAACATTTTTTGATTAGTT 1680 consensus_7605#1 GCCCATGGATTCGAATAGGCTAATAAACTAAATGCATCCTCTAACATTTTTTGATTAGTT 109 ************************************************************ consensus_7605#0 TCATTAACACCATGTTCCTTCTCCAGTCGTTGGCTCATCTGGAACAGTTCGCGACCGAAC 1740 consensus_7605#1 TCATTAACACCATGTTCCTTCTCCAGTCGTTGGCTCATCTGGAACAGTTCGCGACCGAAC 169 ************************************************************ consensus_7605#0 TCTAGCATCCGCTCGACACCCGATTTTGCCGTGGCACTCGTCGATTTACAGTTTGGCGAT 1800 consensus_7605#1 TCTAGCATCCGCTCGACACCCGATTTTGCCGTGGCACTCGTCGATTTACAGTTTGGCGAT 229 ************************************************************ consensus_7605#0 AGCGATGAGTCCACGTCCATATCTTCATCCCGGCCGGTGTCCGCCTCTTCCTCTTCCTCT 1860 consensus_7605#1 AGCGATGAGTCCACGTCCATATCTTCATCCCGGCCGGTGTCCGCCTCTTCCTCTTCCTCT 289 ************************************************************ consensus_7605#0 TCTACCAGTTCGTTCGTGTTCGTTCGATTGGCGGCACTGCCGTTTTTGTAACCATTCGTG 1920 consensus_7605#1 TCTACCAGTTCGTTCGTGTTCGTTCGATTGGCGGCACTGCCGTTTTTGTAACCATTCGTG 349 ************************************************************ consensus_7605#0 GCGCTATTATTGCTGTGGCCGTTCTCCATCTCGACGTCGTTCGAGTAGTCGTCTTCGATG 1980 consensus_7605#1 GCGCTATTATTGCTGTGGCCGTTCTCCATCTCGACGTCGTTCGAGTAGTCGTCTTCGATG 409 ************************************************************ consensus_7605#0 CAGCTGCCATTATTGTTGTTGGTGTTATTACTGAGGACGTTATTTTTTAAGTATCCCTGA 2040 consensus_7605#1 CAGCTGCCATTATTGTTGTTGGTGTTATTACTGAGGACGTTATTTTTTAAGTATCCCTGA 469 ************************************************************ consensus_7605#0 TTGTCAGCATCATCCGGAATAATGGTGTTACCGTTTTGATAACTTTTTGTTGATTGTATC 2100 consensus_7605#1 TTGTCAGCATTATCCG--ATAATGGTGT-ACCGTTT-GATA--CTTNACTCGGGCG-ATC 522 ********** ***** ********** ******* **** ** * * * *** consensus_7605#0 ACCGATGTTTGCACGGGGCTCGTACGCGACGAAGGAGTACCTAGGTCAAAGTCAGATCCG 2160 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 TTCACCATCTCGATAAACTGTCGGCACTTTAGCATAAACAGCAGATTTTGATTCGACTCT 2220 consensus_7605#1 ------------------------------------------------------------ consensus_7605#0 AGCAGACCCGGATAGAGACGAATGGTCTGTT 2251 consensus_7605#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||