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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2212 fasta sequence
[CCGATCATACTGCTCGTCGTCATCTACTATCTGCGCGAGAAGCTGACCGGCCTGGCGGCCCTGTTCGAGGAGGCGGGCAAGTGTATGCTGCAGCTGCCGGGGTTGGCCGGACCGCCGCTGCTCGCCTTCCTCGCACTGTCGATCTTTCTGGCCTTCTGGGTGGTGGTGGTCGTTTGCTTGGCCACCGCCAACTATCCCGGCGTGAAGCCGTTGCTTCCGTTGGCCCAGCTCGAGGACAGTGCTTCGATTGCGAACGATCCAAAGCTGAAGCCGGAGCTGGCGGGGAAGAATGATACCAGCTTCAAGTCATTCAAATTGGTAGAATATCACGACGTGAACGTGCTGCGACACATGCTGTGGATCTACATCATTGGGCTGATCTGGACGAGTGAGTTTATCTTCGCCTGCCAGCAGCTAGCCATTGCCGGTGCCGTCGCGTTCTGGTACTTCCGCAAGCCCACCGATTCGCCCGTCCTGCTCGCGATTGCCAAGCTCGTTAAGTACCATCTTGGGTCCGTTGCAAAGGGTTCGCTCATTATTACGATCTTCAAAATCCCCCGCCTCATCCTTACCTACCTCTACGCGAAATTGAAGCGCCACCAGCAGGAAGGATCGGAATGTGCTAGCTGCTGTTTGCGGTGCTGCATCTGTAGCTTCTGGCTGCTGGAGAAGTTCATCCGCTACCTCAACCACAACGCGTACACCGTGATCGCGATCGAGGGTGTTAACTTCTGTCCCGCTGCAAAGATTGCTTGGAATGCACTCGTCACGAACGCACTGCAGGTCGCCACCATCAATGGTATTGGTGATTTTGTCCTATTCCTTGGCAAGCTGGCGGTGGCATCGATCTGTGGGCTGATTAGCATCCTGCTGCTGCGCGACAATCCCGATCTGCACTTCTACATGGCGCCAGTGATCATTATAACCGTGTTTGCGTTCTTCATCGCTCACATTATACTGTCGCTTTACGAGATGGTGGTTGACACGCTGTTCCTGTGCGTGTGCGAGGATCGCACCATCAACGGCAACAGTGGCCGCTGGAAGGAAAGCAATCTGGCACGGCTGCTGGGCGAAGCGCCGGAAGAGGACGCAGTTGAGGCACCGATGCAGGAGGTACAGCTTACCCCGATCACGAAGCAACCATTCTCCGCCCAATTCCTGCAGGCGGAGATGGAAAATAGTAAGGCTTAAGGATCATTCATCACAAAGTAGTACGCCACCGCGACAAAGGTTTGCGGAAGTGCATGAAGCAAGTAGAGAGTAAGGTTTTTCATTATTTTTTTTTTTTAATATTAACTATAAAGTGTATTTAACAAGTTAAGGGTAAAACTTCCCTTTGACATATTTACATCTTCCGCTACATCGATATTTATCTACATTGGCGTGCCGGCCATTAAGGCTATTTGTATTTGTATCTCACAATCGCCCGCGGGTGGAAAGGAGAAGTTTTGAACGCCCCAACGATAAATCTCATCCACTTAAATAGTATAATTATTTCGGCCATGCACACCCGGTAAATTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAATATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAATGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCATTGATGCACGATTCTAGCGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAATTTACTCAATAATAATATGTTCTTCTTTGAAAAGATGTACGGTGTGCTTCCGATATTAAGTGTGGCGCAATGGAGAAAGTGCACAAAACATGAACGCTGCCGCCGGGGCATTTGAAACTGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGC---TTGCAAACG--ATGTATATAAATATCGCCTGTTGAATG-TTTTTTTTTTCTTATATACAATAGAAGTTTTGTATGGGCCGTTTTTCTCTTGGCGCCGTCCTTTGTAACAATGAGCGTA-CC-CAACGTCAAGGCAGAGCAGAAAGGTAGAGGGCAAATAGGAAGCGAGGGATTGTGCGAGAATTTTTACTCAAAATATTTGCTACAATTTGTGCTATTTAACTATTGAACTACAAATAAAGTTGCGCCCCAGCCGAATAATGTGAAACGAAACACGACTTGTGGGTGAGAGAGCACGCCCAATTTGGTTTTTAAAATAAAG]
[+] EMBL BM621134 [CCGATCATACTGCTCGTCGTCATCTACTATCTGCGCGAGAAGCTGACCGGCCTGGCGGCCCTGTTCGAGGAGGCGGGCAAGTGTATGCTGCAGCTGCCGGGGTTGGCCGGACCGCCGCTGCTCGCCTTCCTCGCACTGTCGATCTTTCTGGCCTTCTGGGTGGTGGTGGTCGTTTGCTTGGCCACCGCCAACTATCCCGGCGTGAAGCCGTTGCTTCCGTTGGCCCAGCTCGAGGACAGTGCTTCGATTGCGAACGATCCAAAGCTGAAGCCGGAGCTGGCGGGGAAGAATGATACCAGCTTCAAGTCATTCAAATTGGTAGAATATCACGACGTGAACGTGCTGCGACACATGCTGTGGATCTACATCATTGGGCTGATCTGGACGAGTGAGTTTATCTTCGCCTGCCAGCAGCTAGCCATTGCCGGTGCCGTCGCGTTCTGGTACTTCCGCAAGCCCACCGATTCGCCCGTCCTGCTCGCGATTGCCAAGCTCGTTAAGTACCATCTTGGGTCCGTTGCAAAGGGTTCGCTCATTATTACGATCTTCAAAATCCCCCGCCTCATCCTTACCTACCTCTACGCGAAATTGAAGCGCCACCAGCAGGAAGGATCGGAATGTGCTAGCTGCTGTTTGCGGTGCTGCATCTGTAGCTTCTGGC ]
[+] EMBL BM593092 [ ccgGCCGTTGCTTCCGTTGGCCCAGCTCGAGGACAGTGCTTCGATTGCGAACGATCCAAAGCTGAAGCCGGAGCTGGCGGGGAAGAATGATACCAGCTTCAAGTCTTTCAAATTGGTGGAATATCACGACGTGAACGTGCTGCGACACATGCTGTGGATCTACATCATTGGGCTGATCTGGACGAGTGAGTTTATCTTCGCTTGCCAGCAGCTAGCCATTGCCGGTGCCGTCGCGTTCTGGTACTTCCGCAAGCCCACCGATTCGCCCGTCCTGCTCGCGATTGCCAAGCTTGTTAAGTACCATCTTGGGTCCGTTGCGAAGGGTTCGCTCATTATTACGATCTTCAAAATCCCCCGCCTCATCCTTACCTACCTATACGCGAAATTGAAGCGCCACCAGCAGGAAGGATCGGAATGTGCTAGCTGCTGTTTGCGGTGCTGCATCTGTAGCTTCTGGCTGCTGGAGAAGTTCATCCGCTACCTCAACCACAACGCGTACACCGTGATCGCGATCGAGGGTGTTAACTTCTGTCCCGCTGCAAAGATTGCTTGGAATGCACTCGTCACGAACGCACTGCAGGTCGCCACCATCAATGGTATTGGTGATTTTGTCCTATTCCTTGGCAAGCTGGCGGTGGCATCGATCTGTGGGCTGATTAGCATCCTGCTGCTGCGCGACAATCCCGATCTGCACTTCTACATG ]
[+] EMBL BM607401 [ ccgGTAGCTTCTGGCTGCTGGAGAAGTTCATCCGCTACCTCAACCACAACGCGTACACCGTGATCGCGATCGAGGGTGTTAACTTCTGTCCCGCGGCAAAGATTGCTTGGAATGCACTCGTCACGAACGCACTGCAGGTCGCCACCATCAATGGTATTGGTGATTTTGTCCTATTCCTTGGCAAGCTGGCGGTGGCATCGATCTGTGGGCTGATTAGCATCCTGCTGCTGCGCGACAATCCTGATCTGCACTTCTACATGGCGCCAGTGATCATTATAACCGTGTTTGCGTTCTTCATCGCTCACATTATACTGTCGCTTTACGAGATGGTGGTTGACACGCTGTTCCTGTGCGTGTGCGAGGATCGCACCATCAACGGCAACAGTGGCCGCTGGAAGGAAAGCAATCTGGCACGGCTGCTGGGCGAAGCGCCGGAAGAGGACGCAGTTGAGGCACCGATGCAGGAGGTACAGCTTACCCCGATCACGAAGCAACCATTCTCCGCCCAATTCCTGCAGGCGGAGATGGAAAATAGTAAGGCTTAAGGATCATTCATCACAAAGTAGTACGCCACCGCGACAAAGGTTTGCGGAAGTGCATGAAGCAAGTAGAGAGTAAGGTTTTTCATTATTTTTTTTTTTTAATATTAACTATAAAGTGTATTTAACAAGTTAAGGGTAAAACTTCCCTTTGACATATTTACATCTTCCG ]
[+] EMBL BX623093 [ aTTTTTTTTATATTAACTATAAAGTGTATTTAAAAAGTTAAGGGTAAAACTTCCCTTTTACATATTTACATCTTCCGCTACATCGATATTTATCTACATTGGCGTGCCGGCCATTAAGGCTATTTGTATTTGTATCTCACAATCGCCCGCGGGTGGAAAGGAGAAGTTTTGAACGCCCCAACGATAAATCTCATCCACTTAAATAGTATAATTATTTCGGCCATGCACACCCGGTAAATTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAATATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAATGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCATTGATGCACGATTCTAGCGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAATTTACTCAATAATAATATGTTCTTCTTTGAAAAGATGTACGGTGTGCTTCCGATATTAAGTGTGGCGCAATGGAGAAAGTGCACAAAACATGAACGCTGCCGCCGGGGCATTTGAAACTGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGC TTGCAAACG ATGTATATAAATATCGCCTGTTGAATG TTTTTTTTTTCTTATATACAATAGAAGTTTTGTATGGGCCGTTTTTCTCTTGGCGCCGTCCTTTGTAACAATGAGCGTA CC CNACGTCA ]
[-] EMBL BM601720 [ tTATATTTACAAAGTTGTGCTTATTGCAAACGATATATATATAAATATCGCCTGTTGAAAGTTTTTTTTTTTCTTATATACAATAGAAGTTTTGTATGGGCCGTTTTTTTCTTGGCGCCGTCCTTTGTAACAATGAGCGTACCC CAACGTCAAGGCAGAGCAGAAAGGTAGAGGGCAAATAGGAAGCGAGGGATTGTGCGAGAATTTTTACTCAAAATATTTGCTACAATTTGTGCTATTTAACTATTGAACTACAAATAAAGTTGCGCCCCAGCCGAATAATGTGA ]
[+] EMBL BX609908 [ TACAATAGAAGTTTTGTATGGGCCGTTTTTCTTTTGGCGCCGTCCTTTGTAACAATGAGCGTA CCACAACGTCAAGGCAGAGCAGAAAGGTAGAGGACAAATAGGAAGCGAGGGATTGTGCGAGAATTTCTACTCAAAATATTTGCTACAATTTGTGCTATTTAACTATTGAACTACAAATAAAGTTGCGCACCAGCCGAATAATGTGAAACGAAACACGACTTGTGGGTGAGAGAGCACGCCCAATTTGGTTTTTAAAATAAAG]
consensusID : consensus_7611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[GCAAGAATCGCCCGACGGTGAAACGAGGGCACACCCGGTAAACTTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAATATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAATGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCACTGATGCACGATTCTAGCGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAATTTACTCAATAATAATATGTTCTTCTTTGAAACAGATGTACGGTGTGCTTCCGATATTAAGTGTGGCGCAAATGGAGAAAGTGCACAAAAACATGAACGCTGCCGCCGGGGCATTTGAAACTGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGCTTATTGCAAACGATGTATATA]
[+] EMBL AL697124 [GCAAGAATCGCCCGACGGTGAAACGAGGGCACACCCGGTAAACTTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAATATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAATGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCACTGATGCACGATTCTAGCGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAATTTACTCAATAATAATATGTTCTTCTTTGAAACAGATGTACGGTGTGCTTCCGATATTAAGTGTGGCGCAAATGGAGAAAGTGCACAAAAACATGAACGCTGCCGCCGGGGCATTTGAAACTGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGCTTATTGCAAACGATGTATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7611#0 CCGATCATACTGCTCGTCGTCATCTACTATCTGCGCGAGAAGCTGACCGGCCTGGCGGCC 60
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CTGTTCGAGGAGGCGGGCAAGTGTATGCTGCAGCTGCCGGGGTTGGCCGGACCGCCGCTG 120
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CTCGCCTTCCTCGCACTGTCGATCTTTCTGGCCTTCTGGGTGGTGGTGGTCGTTTGCTTG 180
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GCCACCGCCAACTATCCCGGCGTGAAGCCGTTGCTTCCGTTGGCCCAGCTCGAGGACAGT 240
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GCTTCGATTGCGAACGATCCAAAGCTGAAGCCGGAGCTGGCGGGGAAGAATGATACCAGC 300
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 TTCAAGTCATTCAAATTGGTAGAATATCACGACGTGAACGTGCTGCGACACATGCTGTGG 360
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 ATCTACATCATTGGGCTGATCTGGACGAGTGAGTTTATCTTCGCCTGCCAGCAGCTAGCC 420
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 ATTGCCGGTGCCGTCGCGTTCTGGTACTTCCGCAAGCCCACCGATTCGCCCGTCCTGCTC 480
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GCGATTGCCAAGCTCGTTAAGTACCATCTTGGGTCCGTTGCAAAGGGTTCGCTCATTATT 540
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 ACGATCTTCAAAATCCCCCGCCTCATCCTTACCTACCTCTACGCGAAATTGAAGCGCCAC 600
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CAGCAGGAAGGATCGGAATGTGCTAGCTGCTGTTTGCGGTGCTGCATCTGTAGCTTCTGG 660
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CTGCTGGAGAAGTTCATCCGCTACCTCAACCACAACGCGTACACCGTGATCGCGATCGAG 720
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GGTGTTAACTTCTGTCCCGCTGCAAAGATTGCTTGGAATGCACTCGTCACGAACGCACTG 780
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CAGGTCGCCACCATCAATGGTATTGGTGATTTTGTCCTATTCCTTGGCAAGCTGGCGGTG 840
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GCATCGATCTGTGGGCTGATTAGCATCCTGCTGCTGCGCGACAATCCCGATCTGCACTTC 900
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 TACATGGCGCCAGTGATCATTATAACCGTGTTTGCGTTCTTCATCGCTCACATTATACTG 960
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 TCGCTTTACGAGATGGTGGTTGACACGCTGTTCCTGTGCGTGTGCGAGGATCGCACCATC 1020
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 AACGGCAACAGTGGCCGCTGGAAGGAAAGCAATCTGGCACGGCTGCTGGGCGAAGCGCCG 1080
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GAAGAGGACGCAGTTGAGGCACCGATGCAGGAGGTACAGCTTACCCCGATCACGAAGCAA 1140
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CCATTCTCCGCCCAATTCCTGCAGGCGGAGATGGAAAATAGTAAGGCTTAAGGATCATTC 1200
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 ATCACAAAGTAGTACGCCACCGCGACAAAGGTTTGCGGAAGTGCATGAAGCAAGTAGAGA 1260
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GTAAGGTTTTTCATTATTTTTTTTTTTTAATATTAACTATAAAGTGTATTTAACAAGTTA 1320
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 AGGGTAAAACTTCCCTTTGACATATTTACATCTTCCGCTACATCGATATTTATCTACATT 1380
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GGCGTGCCGGCCATTAAGGCTATTTGTATTTGTATCTCACAATCGCCCGCGGGTGGAAAG 1440
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GAGAAGTTTTGAACGCCCCAACGATAAATCTCATCCACTTAAATAGTATAATTATTTCGG 1500
consensus_7611#1 ------------------------------------GCAAGAATCGCCCGACGGTGAAAC 24
* *** * * *
consensus_7611#0 CCATGCACACCCGGTAAA-TTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAAT 1559
consensus_7611#1 GAGGGCACACCCGGTAAACTTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAAT 84
************** *****************************************
consensus_7611#0 ATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAA 1619
consensus_7611#1 ATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAA 144
************************************************************
consensus_7611#0 TGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCATTGATGCACGATTCTAG 1679
consensus_7611#1 TGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCACTGATGCACGATTCTAG 204
******************************************* ****************
consensus_7611#0 CGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAAT 1739
consensus_7611#1 CGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAAT 264
************************************************************
consensus_7611#0 TTACTCAATAATAATATGTTCTTCTTTGAAA-AGATGTACGGTGTGCTTCCGATATTAAG 1798
consensus_7611#1 TTACTCAATAATAATATGTTCTTCTTTGAAACAGATGTACGGTGTGCTTCCGATATTAAG 324
******************************* ****************************
consensus_7611#0 TGTGGCGCAA-TGGAGAAAGTGCACAAAA-CATGAACGCTGCCGCCGGGGCATTTGAAAC 1856
consensus_7611#1 TGTGGCGCAAATGGAGAAAGTGCACAAAAACATGAACGCTGCCGCCGGGGCATTTGAAAC 384
********** ****************** ******************************
consensus_7611#0 TGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGCTT---GCAAACGATGTATAT 1913
consensus_7611#1 TGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGCTTATTGCAAACGATGTATAT 444
****************************************** ***************
consensus_7611#0 AAATATCGCCTGTTGAATGTTTTTTTTTTCTTATATACAATAGAAGTTTTGTATGGGCCG 1973
consensus_7611#1 A----------------------------------------------------------- 445
*
consensus_7611#0 TTTTTCTCTTGGCGCCGTCCTTTGTAACAATGAGCGTACCCAACGTCAAGGCAGAGCAGA 2033
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 AAGGTAGAGGGCAAATAGGAAGCGAGGGATTGTGCGAGAATTTTTACTCAAAATATTTGC 2093
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 TACAATTTGTGCTATTTAACTATTGAACTACAAATAAAGTTGCGCCCCAGCCGAATAATG 2153
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 TGAAACGAAACACGACTTGTGGGTGAGAGAGCACGCCCAATTTGGTTTTTAAAATAAAG 2212
consensus_7611#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||