These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1797 fasta sequence [CCGCTTCAATTAAGCAAGTTATATTCTCCTTCATGACGACCTTTAACACATAGCTTTTTTCATTGAAAAGTCGGAATTAGATTTCCTAGTTTGATATAAAATCCCAAAAAACAATACAAAAATGTTTCATTATTTAACTAAAACAAAAAAAATCCAAATATAAAACATCACAGTTATTGGAATAACATTGCAGGAGCTCCAAGCAAACACGTCTAGTTGCTTCGTTTTCGTATAGCACAGGGCAAAGCAAGTACGACAACTTCGGAGTTAGTAGCGCGTTGGCGTACCCTCGTGCCATTCGTTTATCGTGGGGTTTTTCCACTGACATTTTCCTTTTCCATTGCAAGAATGTTCTAGCTTCGCGTAGTCACATTAACATCGGCACATGACACGAACGGCTACCATTCGGCAAACGGACGGAGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCAACGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAGTAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCT-GTGTGGGAAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCATACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGATATGCGTCTTTGTACAGCAGCAAAGCGTCCACCAGTTGAGGAAACAGCATCATTCTTACAAAGCTTGCTGGCATCACACGGTCCTAACTATCTGGAAAAATTATTCGGCAGTAAAGCGCGTGACGCATTAGCACCACTTGGTGGTGTGGAAAAAGTGGCCATTGCTCTCAGTGAATCGCAAACCATCGAAGATTTTGGAGCCGCTCTCCATTTGATGCGGTCTGACCTCGAGCATTTACGATCAGTTTTCATGGCAGTGGAGAACGGCGATTTGGGCATGTTAAAATCGATCGGTATCAAAGATTCAGAGCTGGGTGACGTAAAGTTTTTCCTAGAGAAACTCGTCAACACTGGCTTCCTAGACTGAGTATCGTCCGAGCTGCCGTATAGAAGTAGCTTCTATTATTTACTACCATTAACACCGCAGATTTATTCTTATTTAGGCTCACCGGAAGGTTTCAGCTATTAAGAAACCATAATTCTATCATTCACTGTTACCAGTCAGTGAGGCATATGCCGTATGTTACCAGTGAATCTTGACGACCATAAGAAAAAAAAAAGTTATTTTACTTTATTATATCATCAGGAACATGTTTCGTTAGACTTCCGTGAGAAGAAAAGAAGTAGAGCCTGCCGTAACGATATGGAGTTTGGCGAATGAGACAAATATCAATTATGGATGACTGCTCGCTGGAAAGGAAATATTAACATA-GAAAATCAATTATTCTTTGCATGAGCAGCATTTAAGCCAATTGAAAATCCTGACACAAATCATGATCCAAACCT] [+] EMBL BM629846 [CCGCTTCAATTAAGCAAGTTATATTCTCCTTCATGACGACCTTTAACACATAGCTTTTTTCATTGAAAAGTCGGAATTAGATTTCCTAGTTTGATATAAAATCCCAAAAAACAATACAAAAATGTTTCATTATTTAACTAAAACAAAAAAAATCCAAATATAAAACATCACAGTTATTGGAATAACATTGCAGGAGCTCCAAGCAAACACGTCTAGTTGCTTCGTTTTCGTATAGCACAGGGCAAAGCAAGTACGACAACTTCGGAGTTAGTAGCGCGTTGGCGTACCCTCGTGCCATTCGTTTATCGTGGGGTTTTTCCACTGACATTTTCCTTTTCCATTGCAAGAATGTTCTAGCTTCGCGTAGTCACATTAACATCGGCACATGACACGAACGGCTACCATTCGGCAAACGGACGGAGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCAACGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAGTAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCTGGGGGGGGAAGTGTTTGTGCGCAACGA ] [+] EMBL BM599930 [ cCGGACGGAGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCAACGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAGTAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCT GTGTGGGAAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCATACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGATATGCGTCTTTGTACAGCAGCAAAGCGTCCACCAGTTGAGGAAACAGCATCATTCTTACAAAGCTTGCTGGCATCACACGGTCC ] [+] EMBL BX628420 [ ggGGAGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCATCGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAATAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCT GTGTGGGCAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCATACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGAT ] [+] EMBL BM656389 [ ccgGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATATTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCATACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGATATGCGTCTTTGTACAGCAGCAAAGCGTCCACCAGTTGAGGAAACAGCATCATTCTTACAAAGCTTGCTGGCATCACACGGTCCTAACTATCTGGAAAAATTATTCGGCAGTAAAGCGCGTGACGCATTAGCACCACTTGGTGGTGTGGAAAAAGTGGCCATTGCTCTCAGTGAATCGCAAACCATCGAAGATTTTGGAGCCGCTCTCCATTTGATGCGGTCTGACCTCGAGCATTTACGATCAGTTTTCATGGCAGTGGAGAACGGCGATTTGGGCA ] [+] EMBL BM640159 [ ccgCGGCAGTAAAGCGCGTGACGCATTAGCACCACTTGGTGGTGTGGAAAAAGTGGCCATTGCTCTCAGTGAATCGCAAACCATCGAAGATTTTGGAGCCGCTCTCCATTTGATGCGGTCTGACCTCGAGCATTTACGATCAGTTTTCATGGCAGTGGAGAACGGCGATTTGGGCATGTTAAAATCGATCGGTATCAAAGATTCAGAGCTGGGTGACGTAAAGTTTTTCCTAGAGAAACTCGTCAACACTGGCTTCCTAGACTGAGTATCGTCCGAGCTGCCGTATAGAAGTAGCTTCTATTATTTACTACCATTAACACCGCAGATTTATTCTTATTTAGGCTCACCGGAAGGTTTCAGCTATTAAGAAACCATAATTCTATCATTCACTGTTACCAGTCAGTGAGGCATATGCCGTATGTTACCAGTGAATCTTGACGACCATAAGAAAAAAAAAAGTTATTTTACTTTATTATATCATCAGGAACATGTTTCGTTAGACTTCCGTGAGAAGAAAAGAAGTAGAGCCTGCCGTAACGATATGGAGTTTGGCGAATGAGACAAATATCAATTATGGATGACTGCTCGCTGGAAAGGAAATATTAACATA GAAAATCAATTATTCTTTGCATGAGCAGCATTTAAGCCAATTGAAAATCCTGACACAAATCATGATCCAAACCT] [+] EMBL BM618752 [ ccgCAAAGATTCAGAGCTGGGTGACGTAAAGTTTTTCCTAGAGAAACTCGTCAACACTGGCTTCCTAGACTGAGTATCGTCCGAGCTGCCGTATAGAAGTAGCTTCTATTATTTACTACCATTAACACCGCAGATTTATTCTTATTTAGGCTCACCGGAAGGTTTCAGCTATTAAGAAACCATAATTCTATCATTCACTGTTACCAGTCAGTGAGGCATATGCCGTATGTTACCAGTGAATCTTGACGACCATAAG AAAAAAAAAGTTATTTTACTTTATTATATCATCAGGAACATGTTTCGTTAGACTTCCGTGAGAAGAAAAGAAGTAGAGCCTGCCGTAACGATATGGAGTTTGGCGAATGAGACAAATATCAATTATGGATGACTGCTCGCTGGAAAGG AATATTAACATAGGAAAATCAATTATTCTTTGCATGA ] consensusID : consensus_7631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CCCAGGCNTTACGGCTACATTCGGCAAACGGACGGAGAACGAGCATCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCATCGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAATAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCTGTGTGGGCAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCC] [+] EMBL AL932858 [CCCAGGCNTTACGGCTACATTCGGCAAACGGACGGAGAACGAGCATCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCATCGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAATAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCTGTGTGGGCAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7631#0 CCGCTTCAATTAAGCAAGTTATATTCTCCTTCATGACGACCTTTAACACATAGCTTTTTT 60 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 CATTGAAAAGTCGGAATTAGATTTCCTAGTTTGATATAAAATCCCAAAAAACAATACAAA 120 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 AATGTTTCATTATTTAACTAAAACAAAAAAAATCCAAATATAAAACATCACAGTTATTGG 180 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 AATAACATTGCAGGAGCTCCAAGCAAACACGTCTAGTTGCTTCGTTTTCGTATAGCACAG 240 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 GGCAAAGCAAGTACGACAACTTCGGAGTTAGTAGCGCGTTGGCGTACCCTCGTGCCATTC 300 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 GTTTATCGTGGGGTTTTTCCACTGACATTTTCCTTTTCCATTGCAAGAATGTTCTAGCTT 360 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 CGCGTAGTCACATTAACATCGGCACATGACACGAACGGCTACCATTCGGCAAACGGACGG 420 consensus_7631#1 ------------------------CCCAGGCNTTACGGCTAC-ATTCGGCAAACGGACGG 35 * ******** ***************** consensus_7631#0 AGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGT 480 consensus_7631#1 AGAACGAGCATC-TCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGT 94 ************ *********************************************** consensus_7631#0 TGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCA 540 consensus_7631#1 TGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCA 154 ************************************************************ consensus_7631#0 TTGCTTTACGCGTAGCAACGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTG 600 consensus_7631#1 TTGCTTTACGCGTAGCATCGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTG 214 ***************** ****************************************** consensus_7631#0 GGCTTTAAAAAGTAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAG 660 consensus_7631#1 GGCTTTAAAAAATAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAG 274 *********** ************************************************ consensus_7631#0 TGCTGTGTGGGAAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATA 720 consensus_7631#1 TGCTGTGTGGGCAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATA 334 *********** ************************************************ consensus_7631#0 CTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAAT 780 consensus_7631#1 CTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAAT 394 ************************************************************ consensus_7631#0 CATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGC 840 consensus_7631#1 CATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGC 454 ************************************************************ consensus_7631#0 GATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAA 900 consensus_7631#1 GATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAA 514 ************************************************************ consensus_7631#0 TGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCAT 960 consensus_7631#1 TGAGGCTTGCCATCCATACGAGCC------------------------------------ 538 ************************ consensus_7631#0 ACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGATATGCGTCT 1020 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 TTGTACAGCAGCAAAGCGTCCACCAGTTGAGGAAACAGCATCATTCTTACAAAGCTTGCT 1080 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 GGCATCACACGGTCCTAACTATCTGGAAAAATTATTCGGCAGTAAAGCGCGTGACGCATT 1140 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 AGCACCACTTGGTGGTGTGGAAAAAGTGGCCATTGCTCTCAGTGAATCGCAAACCATCGA 1200 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 AGATTTTGGAGCCGCTCTCCATTTGATGCGGTCTGACCTCGAGCATTTACGATCAGTTTT 1260 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 CATGGCAGTGGAGAACGGCGATTTGGGCATGTTAAAATCGATCGGTATCAAAGATTCAGA 1320 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 GCTGGGTGACGTAAAGTTTTTCCTAGAGAAACTCGTCAACACTGGCTTCCTAGACTGAGT 1380 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 ATCGTCCGAGCTGCCGTATAGAAGTAGCTTCTATTATTTACTACCATTAACACCGCAGAT 1440 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 TTATTCTTATTTAGGCTCACCGGAAGGTTTCAGCTATTAAGAAACCATAATTCTATCATT 1500 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 CACTGTTACCAGTCAGTGAGGCATATGCCGTATGTTACCAGTGAATCTTGACGACCATAA 1560 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 GAAAAAAAAAAGTTATTTTACTTTATTATATCATCAGGAACATGTTTCGTTAGACTTCCG 1620 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 TGAGAAGAAAAGAAGTAGAGCCTGCCGTAACGATATGGAGTTTGGCGAATGAGACAAATA 1680 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 TCAATTATGGATGACTGCTCGCTGGAAAGGAAATATTAACATAGAAAATCAATTATTCTT 1740 consensus_7631#1 ------------------------------------------------------------ consensus_7631#0 TGCATGAGCAGCATTTAAGCCAATTGAAAATCCTGACACAAATCATGATCCAAACCT 1797 consensus_7631#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||