|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7634#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1067 fasta sequence
[CTTACCCCGCTTTTACTTGCACCCGGCGACTTTACCAAGTGCCAGCTGGAGGAGGTACGCCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATATGGCCGACATCGTGATCATCCTGAAGTCGCTCCCCACGAGAGACTGTGCCGAAGCGCTCGGCAAGAAGGTAGAGGAGGATCTGGAAAAGTCGATGAAAACGGAAGTCGTCCCAACGGCGGAAGCCCCTATCGCTGTCGTTCAGCGAGAAGGGGTTCGAAATCTCAAACTCCCTCGCGAAGGTGCGCTGTCTGATTGCCACGCTGCCCCAGAACATGCGCAACTGGAGACGGAGAAGCATCTGGATTTTAAAATCATCCAAAGCCACTTGGCCGCCATCCGGCACACGCGCTGGTTCGAGGAGAACGCACACCATTCCACCATTAAGGTGCTGATTCGCATACTGAAAGATCTTGCCCGCCGGTTCGATGGGTTCAAGCCGCTCAATCCGTGGATTTGCGATCTGCTCGCCCATTCCGCTATCATGAACAACCCGAGCCGTCAGGC-CTGCCGGTGAACGTGGCCTTCCGGCGCGTGTTTCAGCTGCTCGCTTCGGGATTGTTCGTGCCCGGCTCGGCTGGCATTACCGATCCTTGTGAAGTGGGCCACTTCCGGGTGCACACGTCGATGACGCTGGTACA-CAGGACGAATGCTGCATGACGGCCCAAACGCTGGTGCGGGTGCTGGCCCACGGTGGATACAAACACATACTCGGGTTCGTGGAGAACACAACCGTCGCGAACGAAATGTCCGTTTGGGACGGGGTGGTCGTTTCGCCGATGGAACCGGCGTACGAAAAGCCGTCGGAAAAGAAGGACGGCGAAGAGGACGACATGGAATGCGTCGAGGGAGAAACGATTAGCGAAGAGCCGATCGAGTGAAGCCGGTGTTGGGTCGGATTATGGACAAAGCTGCTCTTAACGCGTTATGATTAGTATTTTATTCGGAACACTTGACTTTTTGTCGACTAAACGAAAACGTGTGGATTAATGTCAACTTAACCCTTTGGTAATTGCCGTGAAA]
[+] EMBL CNS08E5K [CTTACCCCGCTTTTACTTGCACCCGGCGACTTTACCAAGTGCCAGCTGGAGGAGGTACGCCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATATGGCCGACATCGTGATCATCCTGAAGTCGCTCCCCACGAGAGACTGTGCCGAAGCGCTCGGCAAGAAGGTAGAGGAGGATCTGGAAAAGTCGATGAAAACGGAAGTCGTCCCAACGGCGGAAGCCCCTATCGCTGTCGTTCAGCGAGAAGGGGTTCGAAATCTCAAACTCCCTCGCGAAGGTGCGCTGTCTGATTGCCACGCTGCCCCAGAACATGCGCAACTGGAGACGGAGAAGCATCTGGATTTTAAAATCATCCAAAGCCACTTGGCCGCCATCCGGCACACGCGCTGGTTCGAGGAGAACGCACACCATTCCACCATTAAGGTGCTGATTCGCATACTGAAAGATCTTGCCCGCCGGTTCGATGGGTTCAAGCCGCTCAATCCGTGGATTTGCGATCTGCTCGCCCATTCCGCTATCATGAACAACCCGAGCCGTCAGGC CTGCCGGTGAACGTGGCCTTCCGGCGCGTGTTTCAGCTGCTCGCTTCGGGATTGTTCGTGCCCGGCTCGGCTGGCATTACCGATCCTTGTGAAGTGGGCCACTTCCGGGTGCACACGTCGATGACGCTGGTACA CAGGACGAATGCTGCATGACGGCCCAAACGCTGGTGCGGGTGCTGGCCCACGGTGGATACAAACACATACTCGGGTTCGTGGAGAACACAACCGTCGCGAACGAAATGTCCGTTTGGGACGGGGTGGTCGTTTCGCCGATGGAACCGGCGTACGAAAAGCCGTCGGAAAAGAAGGACGGCGAAGAGGACGACATGGAATGCGTCGAGGGAGAAACGATTAGCGAAGAGCCGATCGAGTGAAGCCGGTGTTGGGTCGGATTATGGACAAAGCTGCTCTTAACGC ]
[-] EMBL CNS08CKI [ CCCCCTGGCCGCCATCCCGCACACGCTTTGGTTCGAGGAGAACGAACACCATTCCACCATTAAGGTGCTGATTCGCATACTGAAAGATCTTGCCCGCCGGTTCGATGGGTTCAAGCCGCTCAATCCGTGGATTTGCGATCTGCTCGCCCATTCCGCCATCATGAACAACCCGAGCCGTCAGGCGCTGCCGGTGAACGTGGCCTTCCGGCGGGTATTTCAGCTGCTCGCTTCGGGGCTGTTCGTGCCCGGTTCGGCTGGCATTACCGATCCTTGTGAGGTGGGCCACTTCCGGGTGCACACGTCGATGACGCTGGTACAGCAGGACGAATGCTGCATGACGGCCCAAACGCTGGTGCGGGTGCTGGCCCACGGTGGATACAAGAACATACTCGGGTTCGTGGAGAACACAACCGTTGCGAACGAAATGTCCGTTTGGGACGGGGTGGTCGTTTCGCCGATGGAACCGGCGTACGAAAAGCCGTCGGAAAAGAAGGACGGCGAAGAGGACGACATGGAGTACGTCGAGGGAGAAACGATTAGCGAAGAGCCGATCGAGTGAAGCCGGTGTCGGGTCGGATAATGGACACAGCTGCTCTTAACGCGTTATGATTAGTATTTTATTCGGAACACTTGACTTTTTGTCGACTAAACGAAAACGTGTGGATTAATGTCAACTTAACCCTTTGGTAATTGCCGTGAAA]
consensusID : consensus_7634#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 759 fasta sequence
[GTTTGTTGGTGTTCCGGCATTGAACAGACGCAGGTACGGATTGTTGTAGCAAAAGGTCGGCAAATACCAAAGCACACACACACACTAAGCTATGGTTCGTCCGGGAATGATGCGCGGCGGAGGCCG-AGGCGGCATGGGAATGGGCATGCGTGTGCGTGGGGCACCGTTCATGAACAAGAAAACGTTCCTTCCCCGCCACCCGTTCGATCTGACGCTCGCCGAGATGGCCTTTCCCCGGGTGCAGCCGGCGCAGGACGACTCCGTGCTGACCAATGCGCTGCTGAAGCGCAGCCAGGACCTCACACCGGCCGCAGCGGAACAAACGGCCATCTCGAACCTCGTCTCGAAGGTGCAGGCCGTGCTGGATAACATTGTAATTGCACCCGGCGACTTTACCAAGTGCCAGCTGGAGGAGGTACGCCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATGTGGCCGACATCGTGATCATCCTGAAGTCGCTCCCCACGAGAGACTGTGCCGAAGCGCTCGGCAAGAAGGTGGAGGAGGATCTGGAAAAGTCGATGAAAACGGAAGTCGTCCCAACGGCGGAAGCCCTATCGCTGTCGTTCAGCGAGAAGGGGTTCGAAATCTCAAACTCCCTCGCGAAGGTGCGCTGCCTGATTGCCACGCTGCCCCAAAACATGCGCAA-CTGTGAGACGGAGGGGGGTCTGGATTTTAAAATCATCCAAAGCCACCTGGCCGGCATCCGGCACACGCGCTG]
[+] EMBL BX617633 [GTTTGTTGGTGTTCCGGCATTGAACAGACGCAGGTACGGATTGTTGTAGCAAAAGGTCGGCAAATACCAAAGCACACACACACACTAAGCTATGGTTCGTCCGGGAATGATGCGCGGCGGAGGCCG AGGCGGCATGGGAATGGGCATGCGTGTGCGTGGGGCACCGTTCATGAACAAGAAAACGTTCCTTCCCCGCCACCCGTTCGATCTGACGCTCGCCGAGATGGCCTTTCCCCGGGTGCAGCCGGCGCAGGACGACTCCGTGCTGACCAATGCGCTGCTGAAGCGCAGCCAGGACCTCACACCGGCCGCAGCGGAACAAACGGCCATCTCGAACCTCGTCTCGAAGGTGCAGGCCGTGCTGGATAACATTGTAATTGCACCCGGCGACTTTACCAAGTGCCAGCTGGAGGAGGTACGCCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATGTGGCCGACATCGTGATCATCCTGAAGTCGCTCCCCACGAGAGACTGTGCCGAAGCGCTCGGCAAGAAGGTGGAGGAAGATCTGGAAAAGTCGATGAAA ]
[+] EMBL CNS08CKH [ TTTGTTGGTGTTCCGGCTTTGAACAGACGCTGGTACGGATTGTTGTAGCAAAAGGTCGGCAAATACCAAAAC TACAAACACACCAAGCAATGGTTCGTCCGGGAATGATGCGCGGCGGAGGCCGTAGGCGGCATGGGAATGGGCATGCGTGTGCGTGGGGCACCGTTCATGAACAAGAAAACGTTCCTTCCCCGCCACCCGTTCGATCTGACGCTCGCCGAGATGGCCTTTCCCCGGGTGCAGCCGGCGCAGGACGACTCCGTACTGACCAATGCGCTGCTGAAGCG AACCAGGACCTCACACCGGCTGCAGCGGAACAAACGGCCATCTCGAACCTCGTCTCGAAGGTGCAGGCCGTGCTGGATAACATTGTAATTGCACCCGGCGACTTTACCAAATGCCAGCTGGAGGAGGTACGCCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATGTGGCTGACATCGTGATCATCCTGAAGTCGCTCCCCACGAGGGACTGCGCCGAAACGCTCGGCAAGAAGGTGGAGGAGGATCTGGAAAAGTCGATGAAAACGGAAGTCGTCCCAACGGCGGAAGCCCTATCGCTGTCGTTCAGCGAGAAGGGGTTCGAAATCTCAAACTCCCTCGCGAAGGTGCGCTGCCTGATTGCCACGCTGCCCCAAAACATGCGCAA CTGTGAGACGGAGGGGGGTCTGGATTTTAAAATCATCCAAAGCCACCTGGCCG ]
[+] EMBL BX616837 [ GGTCGGCAAATACCAAAGCACACACACACACTAAGCTATGGTTCGTCCGGGAATGATGCGCGGCGGAGGCCG AGGCGGCATGGGAATGGGCATGCGTGTGCGTGGGGCACCGTTCATGAACAAGAAAACGTTCCTTCCCCGCCACCCGTTCGATCTGACGCTCGCCGAGATGGCCTTTCCC ]
[+] EMBL BX615837 [ TGGTTCGTCCGGGAATGATGCGCGGCGGAGGCCG AGGCGGCATGGGAATGGGCATGCGTGTGCGTGGGGCACCGTTCATGAACAAGAAAACGTTCCTTCCCCGCCACCCGTTCGATCTGACGCTCGCCGAGATGGCCTTTCCCCGGGTGCAGCCGGCGCAGGACGACTCCGTGCTGACCAATGCGCTGCTGAAGCGCAGCCAGGACCTCACACCGGCCGCAGCGGAACAAACGGCCATCTCGAACCTCGTCTCGAAGGTGCAGGCCGTGCTGGATAACATTGTAATTGCACCCGGCGACTTTACCAAGTGCCAGCTGGAGGAGGTACGCCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATGTGGCCGACATCGTGATCATCCTGAAGTCGCTCCCCACGAGAGACTGTGCCGAAGCGCTCGGCAAGAAGGTGGAGGAGGATCTGGAAAAGTCGATGAAAACGGAAGTCGTCCCAACGGCGGAAGCCCTATCGCTGTCGTTCAGCGAGAAGGGGTTCGAAATCTCAAACTCCCTCGCGAAGGTGCGCTGTCTGATTGCCACGCTGCCCCAGAACATGCGCAAGCTG GAGACGGAGAAGCATCTGGATTTTAAAATCATCCAAAGCCACTTGGCCCGCATCCGGCACACGCGCTG]
[+] EMBL BX603249 [ ATCTCGAACCTCGTCTCGAAGGTGCAGGCCGTGCTGGATAACATTGTAATTGCACCCGGCGAC TACCAAATGCCAGCTGGAGGAGGTACGCCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATGTGGCTGACATCGTGATCATCCTGAAGTCGCTCCCCACGAGGGACTGCGCCGAAACGCTCGGCAAGAAGGTGGAGGAGGATCTGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7634#0 ------------------------------------------------------------
consensus_7634#1 GTTTGTTGGTGTTCCGGCATTGAACAGACGCAGGTACGGATTGTTGTAGCAAAAGGTCGG 60
consensus_7634#0 ------------------------------------------------------------
consensus_7634#1 CAAATACCAAAGCACACACACACACTAAGCTATGGTTCGTCCGGGAATGATGCGCGGCGG 120
consensus_7634#0 ------------------------------------------------------------
consensus_7634#1 AGGCCGAGGCGGCATGGGAATGGGCATGCGTGTGCGTGGGGCACCGTTCATGAACAAGAA 180
consensus_7634#0 ------------------------------------------------------------
consensus_7634#1 AACGTTCCTTCCCCGCCACCCGTTCGATCTGACGCTCGCCGAGATGGCCTTTCCCCGGGT 240
consensus_7634#0 ------------------------------------------------------------
consensus_7634#1 GCAGCCGGCGCAGGACGACTCCGTGCTGACCAATGCGCTGCTGAAGCGCAGCCAGGACCT 300
consensus_7634#0 ------------------------------------------------------------
consensus_7634#1 CACACCGGCCGCAGCGGAACAAACGGCCATCTCGAACCTCGTCTCGAAGGTGCAGGCCGT 360
consensus_7634#0 -CTTACCCCGCTTTTACTTGCACCCGGCGACTTTACCAAGTGCCAGCTGGAGGAGGTACG 59
consensus_7634#1 GCTGGATAACATTGTAATTGCACCCGGCGACTTTACCAAGTGCCAGCTGGAGGAGGTACG 420
** ** ** *******************************************
consensus_7634#0 CCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATATGGCCGACATCGT 119
consensus_7634#1 CCAGGTGGGCTCGTTCAAGAAGGGCACCATGATGGCCGGTAGCAATGTGGCCGACATCGT 480
********************************************** *************
consensus_7634#0 GATCATCCTGAAGTCGCTCCCCACGAGAGACTGTGCCGAAGCGCTCGGCAAGAAGGTAGA 179
consensus_7634#1 GATCATCCTGAAGTCGCTCCCCACGAGAGACTGTGCCGAAGCGCTCGGCAAGAAGGTGGA 540
********************************************************* **
consensus_7634#0 GGAGGATCTGGAAAAGTCGATGAAAACGGAAGTCGTCCCAACGGCGGAAGCCCCTATCGC 239
consensus_7634#1 GGAGGATCTGGAAAAGTCGATGAAAACGGAAGTCGTCCCAACGGCGGAAGCCC-TATCGC 599
***************************************************** ******
consensus_7634#0 TGTCGTTCAGCGAGAAGGGGTTCGAAATCTCAAACTCCCTCGCGAAGGTGCGCTGTCTGA 299
consensus_7634#1 TGTCGTTCAGCGAGAAGGGGTTCGAAATCTCAAACTCCCTCGCGAAGGTGCGCTGCCTGA 659
******************************************************* ****
consensus_7634#0 TTGCCACGCTGCCCCAGAACATGCGCAACTG-GAGACGGAGAAGCATCTGGATTTTAAAA 358
consensus_7634#1 TTGCCACGCTGCCCCAAAACATGCGCAACTGTGAGACGGAGGGGGGTCTGGATTTTAAAA 719
**************** ************** ********* * **************
consensus_7634#0 TCATCCAAAGCCACTTGGCCGCCATCCGGCACACGCGCTGGTTCGAGGAGAACGCACACC 418
consensus_7634#1 TCATCCAAAGCCACCTGGCCGGCATCCGGCACACGCGCTG-------------------- 759
************** ****** ******************
consensus_7634#0 ATTCCACCATTAAGGTGCTGATTCGCATACTGAAAGATCTTGCCCGCCGGTTCGATGGGT 478
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 TCAAGCCGCTCAATCCGTGGATTTGCGATCTGCTCGCCCATTCCGCTATCATGAACAACC 538
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 CGAGCCGTCAGGCCTGCCGGTGAACGTGGCCTTCCGGCGCGTGTTTCAGCTGCTCGCTTC 598
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 GGGATTGTTCGTGCCCGGCTCGGCTGGCATTACCGATCCTTGTGAAGTGGGCCACTTCCG 658
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 GGTGCACACGTCGATGACGCTGGTACACAGGACGAATGCTGCATGACGGCCCAAACGCTG 718
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 GTGCGGGTGCTGGCCCACGGTGGATACAAACACATACTCGGGTTCGTGGAGAACACAACC 778
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 GTCGCGAACGAAATGTCCGTTTGGGACGGGGTGGTCGTTTCGCCGATGGAACCGGCGTAC 838
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 GAAAAGCCGTCGGAAAAGAAGGACGGCGAAGAGGACGACATGGAATGCGTCGAGGGAGAA 898
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 ACGATTAGCGAAGAGCCGATCGAGTGAAGCCGGTGTTGGGTCGGATTATGGACAAAGCTG 958
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 CTCTTAACGCGTTATGATTAGTATTTTATTCGGAACACTTGACTTTTTGTCGACTAAACG 1018
consensus_7634#1 ------------------------------------------------------------
consensus_7634#0 AAAACGTGTGGATTAATGTCAACTTAACCCTTTGGTAATTGCCGTGAAA 1067
consensus_7634#1 -------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||