These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1137 fasta sequence [GATCCCCCGAGGTTTGACGACATGGCGGAGAAGTGTATTGTGAACATCGAATCTTTGAATCTAGCAGAATATAGCTTTGTTTGTCAAGTAGTGAATCAAACATTCTCCATTGGATTGAAACCGGAAGAACATTTTAATCTTCATCCCGGATATTTGCACCTTGCAAAAACGTATCTCTGTCGCGTGTATTATTCCCTTCAACTCTCCGGTATTGGAAACATCCTGTTCCTAACATCCCGGAGCGGAAGTAACAACTTAACAATGGATTGGGACATCGTTGACATCTCTAATTTCCTCCCCGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCATTCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGAGA-CAACAACAACCTGCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACACTGTCCGCACACAAGAAGCTGCACGACCAAAGAGGACCCGGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCAGCGCTCTCTCCAGCCATCGACTGTTGCATCGGTCGGATCGGCCACACAGCTGCAGTCTCTGTGAAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACACACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCAGTGTGGAAAAGCTTTTACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTGACGACCGGCCCCATGAGTGTGCCGTTTGCTCGAAGACCTTCAAGGAGCGGTATGACCTGCTGCGCCACACACTCATTCACAGTGGACTGCGGCCGCACAAGTGTCCCGATTGCTCCAAAACCTTCGTCCAATCCAATGCACTGGTTAAGCATCGAAAGTGTCACGAA] [+] EMBL AL697364 [GATCCCCCGAGGTTTGACGACATGGCGGAGAAGTGTATTGTGAACATCGAATCTTTGAATCTAGCAGAATATAGCTTTGTTTGTCAAGTAGTGAATCAAACATTCTCCATTGGATTGAAACCGGAAGAACATTTTAATCTTCATCCCGGATATTTGCACCTTGCAAAAACGTATCTCTGTCGCGTGTATTATTCCCTTCAACTCTCCGGTATTGGAAACATCCTGTTCCTAACATCCCGGAGCGGAAGTAACAACTTAACAATGGATTGGGACATCGTTGACATCTTTAATTTCC ACCGGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCANAACACTTCCACAGGCTGAGGACGAATCTTCAGAATGCCACAA ACACCAATGATCCATTCTTCTTTATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAACGTCCTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTCGAGGAACCCAACGACAGTTTGAACAAGGCTGCCGTTCCTATTTCA CTCCAGACAA TGCTCCAGAGACCAACAACAA CTGCAG CGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGC ] [+] EMBL BX610658 [ GATTGGGACATCGTTGACATCTCTAATTTCCTCCCCGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCATTCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGAGA CAACAACAACCTG ] [+] EMBL BX610657 [ ATCGTTGACATCTCTAATTTCCTCCCCGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCATTCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGAGA CAACAACAACCTGCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACACTGTCCGCACACAAGAAGCTGCACGACCAAAGAGGACCCGGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCA ] [+] EMBL BX610659 [ CGTTGACATCTCTAATTTCCTCCCCGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCATTCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACT ] [+] EMBL BX609637 [ CATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAACGTCCTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTCGAGGAACCCAACGACAGTTTGAACAAGGCTGCCGTTCCTATTTCACCTCCAGACAACTGCTCCAGAGA CAACAACAACCTGCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACACTGTCCGCACACAAGAAGCTGCACGATCAAAGAGGACCCAGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCAGCGCTCTCTCCAGCCATCGACTGTTGCATCGGTCGGATCGGCCACACAGCTGCAGTCTCTGTGAAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACACACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCAGTGTGGAAAAGCTTTTACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTGACGACCGGCCCCATGAGTGTGCCGTTTGCTCGAAGACCTTCAAGGAGCGGTATGACCTGCTGCGCCACACACTCATTCACAGTGGACTGCGGCCGCACAAGTGTCCCGATTGCTCCAAAACCTTCGTCCAATCCAATGCACTGGTTAAGCATCGAAAGTGTCACGAA] [+] EMBL BX610825 [ TCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGAGA CAACAACAACCTGCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACACTGTCCGCACACAAGAAGCTGCACGACCAAAGAGGACCCGGT ] consensusID : consensus_7652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence [TGCATGCTGAAGATATATTCCAATAGGGATTCATTCCAATCACTCCATTTCCCGACGGCATTTGATGTCTGTAATCAGTTGTTGTGAATAATATTGTTTGTGTTTCAGATCTCCAGCGTTGGAGCTTCGTGATTCCCACCAGTTGTTCGACACAATGTCCTGTTTAGAGGAGATGGAAGTAGAACGCGACATGTTCGGAGAATCCAGCGACACCTTGCAAAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGGGATTCTAGTCTGCGTGACAAACAACTCCACACTGACAACAACAACCTCCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGACTTTCCTCCACACTGTCCGCCCACAAGAAGCTGCACGACCAAAGAGGACCCAGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCAGCGCTCTCTCGAGCCATCGACTGCTGCATCGGTCGCATCGGCCACACAGCTGCAGTCTCTGTGGAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACACACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCTGTGTGGAAAAGCTTTTACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTAACGAGCGACCCCATGAGTGTGCCGATTGCTCGAAGGNCTTCAAGGAGCGGTATGACCTGCTGCGCCACACGCTCATTCACAGTGGACTGCGGCCGCACAAGTGTCCGATTGCTCCAAAACCTTCGTCCAATCCAATGCACTGGTTAAACATCGA] [+] EMBL BX625372 [TGCATGCTGAAGATATATTCCAATAGGGATTCATTCCAATCACTCCATTTCCCGACGGCATTTGATGTCTGTAATCAGTTGTTGTGAATAATATTGTTTGTGTTTCAGATCTCCAGCGTTGGAGCTTCGTGATTCCCACCAGTTGTTCGACACAATGTCCTGTTTAGAGGAGATGGAAGTAGAACGCGACATGTTCGGAGAATCCAGCGACACCTTGCAAAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGGGATTCTAGTCTGCGTGACAAACAACTCCACACTGACAACAACAACCTCCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGACTTTCCTCCACACTGTCCGCCCACAAGAAGCTGCACGACCAAAGAGGACCCAGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCAGCGCTCTCTCGAGCCATCGACTGCTGCATCGGTCGCATCGGCCACACAGCTGCAGTCTCTGTGGAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACACACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCTGTGTGGAAAAGCTTTTACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTAACGAGCGACCCCATGAGTGTGCCGATTGCTCGAAGGNCTTCAAGGAGCGGTATGACCTGCTGCGCCACACGCTCATTCACAGTGGACTGCGGCCGCACAAGTGTCCGATTGCTCCAAAACCTTCGTCCAATCCAATGCACTGGTTAAACATCGA] consensusID : consensus_7652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [TGATTCAAACAAGTTGTCCGACACAACGTCTTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTCGAGGAACGAAACGACAGTTTGAACAAGGGTGCGGTTCGTATTTCACGTCTAGAAAACTGCTCAAGAGACAACAACAACTTGCAGCAGAGGGACGAAAGGCTTTTCGGGTGTGCGATCTGTCTAAAGGGGTTCGGGCTTTTTTCAACACTGTCTGCACACA] [+] EMBL BX613093 [TGATTCAAACAAGTTGTCCGACACAACGTCTTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTCGAGGAACGAAACGACAGTTTGAACAAGGGTGCGGTTCGTATTTCACGTCTAGAAAACTGCTCAAGAGACAACAACAACTTGCAGCAGAGGGACGAAAGGCTTTTCGGGTGTGCGATCTGTCTAAAGGGGTTCGGGCTTTTTTCAACACTGTCTGCACACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7652#0 GATCCCCCGAGGTTTGACGACATGGCGGAGAAGTGTATTGTGAACATCGAATCTTTGAAT 60 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 ------------------------------------------------------------ consensus_7652#0 CTAGCAGAATATAGCTTTGTTTGTCAAGTAGTGAATCAAACATTCTCCATTGGATTGAAA 120 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 ------------------------------------------------------------ consensus_7652#0 CCGGAAGAACATTTTAATCTTCATCCCGGATATTTGCACCTTGCAAAAACGTATCTCTGT 180 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 ------------------------------------------------------------ consensus_7652#0 CGCGTGTATTATTCCCTTCAACTCTCCGGTATTGGAAACATCCTGTTCCTAACATCCCGG 240 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 ------------------------------------------------------------ consensus_7652#0 AGCGGAAGTAACAACTTAACAATGGATTGGGACATCGTTGACATCTCTAATTTCCTCCCC 300 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 ------------------------------------------------------------ consensus_7652#0 GAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATC 360 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 -----------------------------------------TGCATGCTGAAGATATATT 19 consensus_7652#0 ACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCAT 420 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 CCAATAGGGATTCATTCCAATCACTCCATTTCCCGACGGCATTTGATGTCTGTAATCAGT 79 consensus_7652#0 TCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCC 480 consensus_7652#2 -----------------------------------------------------TGATTCA 7 consensus_7652#1 TGTTGTGAAT---AATATTGTTTGTGTTTCAGATCTCCAGCGTTGGAGCTTCGTGATTCC 136 ****** consensus_7652#0 CACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGC 540 consensus_7652#2 AACAAGTTGTCCGACACAACGTCTTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTC 67 consensus_7652#1 CACCAGTTGTTCGACACAATGTCCTGTTTAGAGGAGATGGAAGTAGAACGCGACATGTTC 196 ** ****** ******** *** ********************* ** ******** * consensus_7652#0 GAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGC 600 consensus_7652#2 GAGGAACGAAACGACAGTTTGAACAAGGGTGCGGTTCGTATTTCACGTCTAGAAAACTGC 127 consensus_7652#1 GGAGAATCCAGCGACACCTTGCAAAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGC 256 * *** * *** * *** * **** *** **** ******* ** *** ****** consensus_7652#0 TCCAGAGA---------------------------------CAACAACAACCTGCAGCCG 627 consensus_7652#2 TCAAGAGA---------------------------------CAACAACAACTTGCAGCAG 154 consensus_7652#1 TCCAGGGATTCTAGTCTGCGTGACAAACAACTCCACACTGACAACAACAACCTCCAGCCG 316 ** ** ** ********** * **** * consensus_7652#0 AGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACA 687 consensus_7652#2 AGGGACGAAAGGCTTTTCGGGTGTGCGATCTGTCTAAAGGGGTTCGGGCTTTTTTCAACA 214 consensus_7652#1 AGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGACTTTCCTCCACA 376 ************* **** ******* ******* **** **** * **** ** *** consensus_7652#0 CTGTCCGCACACAAGAAGCTGCACGACCAAAGAGGACCCGGTCTACGGTGTGAGACGTGT 747 consensus_7652#2 CTGTCTGCACACA----------------------------------------------- 227 consensus_7652#1 CTGTCCGCCCACAAGAAGCTGCACGACCAAAGAGGACCCAGTCTACGGTGTGAGACGTGT 436 ***** ** **** consensus_7652#0 GGACGAGCCTTCACGCAACCCAGCGCTCTCTCCAGCCATCGACTGTTGCATCGGTCGGAT 807 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 GGACGAGCCTTCACGCAACCCAGCGCTCTCTCGAGCCATCGACTGCTGCATCGGTCGCAT 496 consensus_7652#0 CGGCCACACAGCTGCAGTCTCTGTGAAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACA 867 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 CGGCCACACAGCTGCAGTCTCTGTGGAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACA 556 consensus_7652#0 CACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCAGTGTGGAAAAGCTTTT 927 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 CACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCTGTGTGGAAAAGCTTTT 616 consensus_7652#0 ACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTGACGACCGGCCCCATGAG 987 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 ACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTAACGAGCGACCCCATGAG 676 consensus_7652#0 TGTGCCGTTTGCTCGAAGACCTTCAAGGAGCGGTATGACCTGCTGCGCCACACACTCATT 1047 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 TGTGCCGATTGCTCGAAGGNCTTCAAGGAGCGGTATGACCTGCTGCGCCACACGCTCATT 736 consensus_7652#0 CACAGTGGACTGCGGCCGCACAAGTGTCCCGATTGCTCCAAAACCTTCGTCCAATCCAAT 1107 consensus_7652#2 ------------------------------------------------------------ consensus_7652#1 CACAGTGGACTGCGGCCGCACAAGTGTCC-GATTGCTCCAAAACCTTCGTCCAATCCAAT 795 consensus_7652#0 GCACTGGTTAAGCATCGAAAGTGTCACGAA 1137 consensus_7652#2 ------------------------------ consensus_7652#1 GCACTGGTTAAACATCGA------------ 813 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||