These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1110 fasta sequence [GAATNGCCCGAGGTTTATGCGGTTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTACGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTACGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCG-AACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTCATGGGGCACGAGGTGAAGGCGGCCGATTTTCTCCCGGTTGCGGTAGTGCAGCACCCGGGCGCGACCGCCCTACACCACCACGACCTGTCCAACCCGAACAACGTGCTAAAGTTTCACGTGCTACCCTACTCGCTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCACCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCTATTCATTACTGACACGATAAGCTTAAGCGAGGCAAGGTGAAGCGATTGTAATTTTTTTAGTAGTGCGCGTTAAGGAGTTTCCCCTTTTTGTTTTTGTTTTTATGTTTTAACACCAAGAATAATAGTGGCGAAAATTACGCACGAGAAG] [+] EMBL AL930690 [GAATNGCCCGAGGTTTATGCGGTTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTACGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTACGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCG AACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGC ] [+] EMBL BX625073 [ TTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTACGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTACGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCG AACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTCATGGGGCACGAGGTGAAGGCGGCCGATTTTCTCCCGGT ] [+] EMBL BX621832 [ CCCGGCGCAAACGGAGCGGCAACCCG AACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTCATGGGGCACGAGGTGAAGGCGGCCGATTTTCTCCCGGGTGCGGTAGTGCAGCACCCGGGCGCGACCGCCCTACACCACCACGACCTGTCCAACCCGAACAACGTGCTAAAGTTTCACGTGCTACCCTACTCGCTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCACCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCTATTCATTACTGACACGATAAGCTTAAGCGAGGCAAGGTGAAGCGATTGTAATTTTTTTAGTAGTGCGC ] [+] EMBL BX621893 [ AACCCGCAACAGNTCTGCCGGNAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGNTTCGCCCGAGCTNTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCNAGCTGATANCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTCATG ] [+] EMBL BX618028 [ CGTGCTACCCTACTCGCTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCACCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCTATTCATTACTGACACGATAAGCTTAAGCGAGGCAAGGTGAAGCGATTGTAATTTTTTTAGTAGTGCGCGTTAAGGAGTTTCCCCTTTTTGTTTTTGTTTTTATGTTTTAACACCAAGAATAATAGTGGCGAAAATTACGCACGAGAAG] consensusID : consensus_7662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 897 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGGCGGTCCGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCGAACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTG-CCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTTCATGGGGCACGAGGTGNAAGGCGGCCGATTTTCTCCCGGGTCGGTAGTGCAGCACCCCGGCGGCGACTGCCTTACACCACCACGACCTGTCCAACCCGAACAACGTGCTAAAGTTTCACGTGCTACCCTACTCGTTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCGCCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCCTAGAAAATCAANAAAAGGCAGGCATGTGC] [+] EMBL BM630155 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGGCGGTCCGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCGAACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTG CCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGC ] [-] EMBL BX466679 [ AGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGTCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGTCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTTCATGGGGCACGAGGTGNAAGGCGGCCGATTTTCTCCCGGGTCGGTAGTGCAGCACCCCGGCGGCGACTGCCTTACACCACCACGACCTGTCCAACCCGAACAACGTGCTAAAGTTTCACGTGCTACCCTACTCGTTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCGCCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCCTAGAAAATCAANAAAAGGCAGGCATGTGC] consensusID : consensus_7662#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [CACCACCAGCAGATTCGCGCGTGACCCGCAGCAACCTGTCCCGGTCGGAAAGGTGACAGACGACGCACTTACGACTGCTACGATTTCTAAACAATGAACGCGCCATATCCGACACCGAACGCATGCTACACGGACATCAAGCAGGGCATCCTTTCCTACACGCTACCCCTGCGCACCGATCTGAGCGATATTCCGGGACCGCCCATAAGCTTGCTGCCAACTCCGCCCCACAGCCTGCTGCCAACCGTCGCGCAGGACAAATCATCGTCCTCCTCCGGGCAGAAGAAGAAGCGCCGCGCGTACGTGAACGAAAGCGAGGAGGCCCGGGCACGCCGCCTAGCGCGCAACGCAGAAAGGATGCGGCAGAAGCGCGCCAACGAGACGGAGGAAGAGTACCGGCTGCGGCTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTGCGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTCC] [+] EMBL BX605709 [CACCACCAGCAGATTCGCGCGTGACCCGCAGCAACCTGTCCCGGTCGGAAAGGTGACAGACGACGCACTTACGACTGCTACGATTTCTAAACAATGAACGCGCCATATCCGACACCGAACGCATGCTACACGGACATCAAGCAGGGCATCCTTTCCTACACGCTACCCCTGCGCACCGATCTGAGCGATATTCCGGGACCGCCCATAAGCTTGCTGCCAACTCCGCCCCACAGCCTGCTGCCAACCGTCGCGCAGGACAAATCATCGTCCTCCTCCGGGCAGAAGAAGAAGCGCCGCGCGTACGTGAACGAAAGCGAGGAGGCCCGGGCACGCCGCCTAGCGCGCAACGCAGAAAGGATGCGGCAGAAGCGCGCCAACGAGACGGAGGAAGAGTACCGGCTGCGGCTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTGCGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7662#0 GAATNGCCCGAGGTTTATGCGGTTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACA 60 consensus_7662#1 ------------------------------------------------------------ consensus_7662#2 ------------------------------------------------------------ consensus_7662#0 AAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTT 120 consensus_7662#1 ------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGCCC 30 consensus_7662#2 ------------------------------------------------------------ consensus_7662#0 ACGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTACGGTTGGCCAAGCTGGCCGAACG 180 consensus_7662#1 ACG-CGTCCGCC-----CACGCGTCCGGCGGGCGGTCCGGTTGGCCAAGCTGGCCGAACG 84 consensus_7662#2 ------------------------------------------------------------ consensus_7662#0 GATGCGTATCGCCCGTGCGAACGAAACGCC-CGAACAGCGGGCCATGCGGCTGGCCAAGA 239 consensus_7662#1 GATGCGTATCGCCCGTGCGAACGAAACGCC-CGAACAGCGGGCCATGCGGCTGGCCAAGA 143 consensus_7662#2 --------------------------CACCACCAGCAGATTCGCGCGTGACCCGC-AGCA 33 * ** * * *** * * * * ** * * consensus_7662#0 ACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAA 299 consensus_7662#1 ACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAA 203 consensus_7662#2 ACCTGTCCCGGTCGGAAAGGTGACAGACGACGCACTTACG-----ACTGCTACGATTTCT 88 ** * ** ** * * * * ** ** * * * * * ** *** consensus_7662#0 AGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCGAACAGCTCTGCCG 359 consensus_7662#1 AGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCGAACAGCTCTGCCG 263 consensus_7662#2 AAACAATGAACGCGCCATA--TCCGACACCGAACGCATG-CTACACGGACATCAAGCAGG 145 * ** *** *** *** *** * * * * * * ** ** *** * * consensus_7662#0 GCAGCAGCAGCAGCAACGATGCGGCCATACACAG-TACGCTCGCTTCGCCCGAGCTTTCC 418 consensus_7662#1 GCAGCAGCAGCAGCAACGATGCGGCCATACACAG-TACGCTCGCTTCGCCCGAGCTTTCC 322 consensus_7662#2 GCATCCTTTCCTACA-CGCTACCCCTGCGCACCGATCTGAGCGATATTCCGGGAC----- 199 *** * * ** ** * * * *** * * * ** * ** * * consensus_7662#0 TACGGCCATAGCTACGTCCCCGACCTTGGCC-ACGGGGTGCCGCCGGACGTGAAGGACAT 477 consensus_7662#1 TACGGCCATAGCTACGTCCCCGACCTTGGCC-ACGGGGTGCCGCCGGACGTGAAGGACAT 381 consensus_7662#2 --CGCCCATAAGCTTGCTGCCAACTCCGCCCCACAGCCTGCTGCCAACCGTCGCGCAGGA 257 ** ***** * ** ** * ** ** * *** *** *** * * consensus_7662#0 CAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACA-GCAACCGGAACAGA 536 consensus_7662#1 CAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACA-GCAACCGGAACAGA 440 consensus_7662#2 CAAATCATCGTCCTCCTCCGGGCAGAAGAAGAAGCGCCGCGCGTACGTGAACGAAAGCGA 317 *** **** * **** * ** **** * * * ** ** ** consensus_7662#0 TCTACAGCACACCGCACCTGCCCTT-CATGGGGCACGAGGTGAA-GGCGGCCGATTTTCT 594 consensus_7662#1 TCTACAGCACACCGCACCTGCCCTTTCATGGGGCACGAGGTGNAAGGCGGCCGATTTTCT 500 consensus_7662#2 ---GGAGGCCCGGGCACGCCGCCTAGCGCGCAACGCAGAAAGGA-TGCGGCAGAAGCGCG 373 ** * **** *** * * * * * * ***** ** * consensus_7662#0 CCCG-GTTGCGGTAGTGCAGCACCCGGGCG-CGACCGCCCTACACCACCACGACCTGTCC 652 consensus_7662#1 CCCG-GGT-CGGTAGTGCAGCACCCCGGCGGCGACTGCCTTACACCACCACGACCTGTCC 558 consensus_7662#2 CCAACGAGACGGAGGAAGAGTACC--GGCTGCGGCTGGCCAAGAATGCGGAAAGCAATC- 430 ** * *** * ** *** *** ** * * * * * * * * ** consensus_7662#0 AACCCGAACAACGTGCTAAAGTT--TCACGTGC-TACCCTACTCGCTGCCGCCCGGTGCA 709 consensus_7662#1 AACCCGAACAACGTGCTAAAGTT--TCACGTGC-TACCCTACTCGTTGCCGCCCGGTGCA 615 consensus_7662#2 GACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCC-CGCAGTGCG 489 ** * * ** * * ** * ** *** * * * **** * * **** consensus_7662#0 GCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCACCCCATCCCGGACATACGGTGTAC 769 consensus_7662#1 GCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCGCCCCATCCCGGACATACGGTGTAC 675 consensus_7662#2 GCAC-GCGAACGCTTGCGGCGCGCGATGGAAA--CGCCCGAGC---AGCGGGCGGTCC-- 541 ** * * ** * **** ** ** * * *** * * * **** consensus_7662#0 AAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCT 829 consensus_7662#1 AAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCT 735 consensus_7662#2 ------------------------------------------------------------ consensus_7662#0 CCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTG 889 consensus_7662#1 CCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTG 795 consensus_7662#2 ------------------------------------------------------------ consensus_7662#0 AAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACA 949 consensus_7662#1 AAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACA 855 consensus_7662#2 ------------------------------------------------------------ consensus_7662#0 TATATACAAACC-TATTCATTACTGACACGATAAGCTTAAGCGAGGCAAGGTGAAGCGAT 1008 consensus_7662#1 TATATACAAACCCTAGAAAATCAANAAAAGGCAGGCATGTGC------------------ 897 consensus_7662#2 ------------------------------------------------------------ consensus_7662#0 TGTAATTTTTTTAGTAGTGCGCGTTAAGGAGTTTCCCCTTTTTGTTTTTGTTTTTATGTT 1068 consensus_7662#1 ------------------------------------------------------------ consensus_7662#2 ------------------------------------------------------------ consensus_7662#0 TTAACACCAAGAATAATAGTGGCGAAAATTACGCACGAGAAG 1110 consensus_7662#1 ------------------------------------------ consensus_7662#2 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||