These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 903 fasta sequence [CCCGGCGCTGTCAG-AGAGGAAAACAAAACACGAGCACGATTGTACAACACA-ATAATAATTCCG-TAAGAAAGGGCTCGC-AAAATGGCTGGCATTATTCGTTCTACACTTGCGGGAAGGAATGCGGTCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCAAATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAAGCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTTGAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACGCCACCGGAAAACGTTGCCGAGCAGGTGCTTAAGTTGGCCAAAGAGAATGGTTTGATCGATGCCAGGCAGCCGTTCGGTGGGATGGAGAAGAAATTTGCATTTCTGTCGGCATGCGGCAAAGCGCTCGGGCATTGGGTGCCGAATTCAATGCTGCACGAGGTACAAACCGTGGAGGATGCCACGATATTCTACCAAACACCAATCGACACACGACTTCCGCTCGATGCGATACGCTCGGTAGAGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGATACGATGTTCGGTGGAAAGTCGGCCTTCCCGAAGAGTTCGACGGTTGTGACCGGGCTGAAGTACAAACAGAAATACCGTGGCCACGAGGCGAAGAAATCTTGGCCATAGGCTGGGGTGGCAACCGTTACCGGGGATGTAATGTAGGCGTTAATAGTGTGTTTGAAATAAAGGAACCCCGTGGCAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTTCCCCCCC] [+] EMBL BM605592 [ CCGGCGCTGTCAG AGAGGAAAACAAAACACGAGCACGATTGTACAACACA ATAATAATTCCG TAAGAAAGGGCTCGC AAAATGGCTGGAATTATTCGTTCTACACTTGCGGGAAGGAATGCGATCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCAAATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAAGCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTTGAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACGCCACCGGAAAACGTTGCCGAGCAGGTGCTTAAGTTGGCCAAAGAGAATGGTTTGATCGATGCCAGGCAGCCGTTCGGTGGGATGGAGAAGAAATTTGCATTTCTGTCGGCATGCGGCAAAGCGCTCGGGCATTGGGTGCCGAATTCAATGCTGCACGAGGTACAAACCGTGGAGGATGCCACGATATTCTACCAAACACCAATCGACACACGACTTCCGCTCGATGCGATACGCTCGGTAGAGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGATACGATG ] [+] EMBL AL933363 [caggtttaTGTCAGCAGAGGAAAACAAAACACGAGCACGATTGTACAACAAACATAATAATTCCGCTAAAAACGGGCTCGCTAAAATGGCTGGCATTATTCGTTCTACACTTGCGGGAAGGAATGCGGTCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCAAATCGTGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAAGCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTTGAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACGCCACCGGAAAACGTTGCCAAGCAGG ] [+] EMBL CNS093O4 [ gctactggGTACAACACA ATAATAATTCCG TAAGAAAGGGCTCGC AAAATGGCTGGAATTATTCGTTCTACACTTGCGGGAAGGAATGCGATCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCAAATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAAGCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTTGAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACGCCACCGGAAAACGTTGCCGAGCAGGTGCTTAAGTTGGCCAAAGAGAATGGTTTGATCGATGCCAGGCAGCCGTTCGGTGGGATGGAGAAGAAATTTGCATTTCTGTCGGCATGCGGCAAAGCGCTCGGGCATTGGGTGCCGAATTCAATGCTGCACGAGGTACAAACCGTGGAGGATGCCACGATATTCTACCAAACACCAATCGACACACGACTTCCGCTCGATGCGATACGCTCGGTAGAGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGATACGATGTTCGGTGGAAAGTCGGCCTTCCCGAAGAGTTCGACGGTTGTGACCGGGCTGAAGTACAAACAGAAATACCGTGGCCACGAGGCGAAGAAATCTTGGCCATAGGCTGGGGTGGCAACCGTTACCGGGGATGTAATGTAGGCGTTAATAGTGTGTTTGAAATAAAGGAACCCCGTGGCAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTTCCCCCCC] [+] EMBL BX469033 [ AATGGCTGCCATTATTCGTTCTACACTTGCGGGAAGGAATGCGGTCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCAAATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAAGCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTTGAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACGCCACCGGAAAAacg ] [+] EMBL AGA282667 [ GCTGCCATTATTCGTTCTACACTTGCGGGAAGGAATGCGGTCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCAAATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAAGCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTTGAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACGCCACCGGAAAACGTTGCCGAGCAGGTGCTTAAGTTGGCCAAAGAGAATGGTTTGACCGACGCCAGGAAGCCGTTCGGTGGGATGGAGAAGAAATTTGCATTTCTGTCGGCATGCGGCAAAGCGCTCGGGCACTGGGTACCGAATTCAATGCT ] [-] EMBL AGA281039 [ GCGCTCGGGCAATGGGTACCGAATTCAATGCTGCAGGAGGTACAAACCGTGGAGGATGCCACGATATTTTACCAAACCCCAATCGACACACGACTTCCGCTCGATGCGATACGTTCGGTAGAGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGATACGATGTTCGGTGGAAAGTCGGCCTTCCCGAAGAGTTCGACGGTTGTGACCGGGCTGAAGTACAAACAGAAATACCGTGGCCACGAGGCGAAGAAATCTTGGCCATAGGCGGGGGCGGCAACCGTTACCGGGGATGTAATGTAGGCGTTAATAGTGTGTTTGAAATAAAGGAACCCCGTGGCAAATTTAAAAAAAA ] [-] EMBL CNS08ZFM [ CCAATCAAAAAACGACTTCCGCTCGATGCGATACGCTCGGTAGGGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGATACGATGTTCGGTGGAAAGTCGGCCTTCCCGAAGAGTTCGACGGTTGTGACCGGGCTGAAGTACAAACAGAAATACCGTGGCCACGAGGCGAAGAAATCTTGGCCATAGGCTGGGGT ] consensusID : consensus_7670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence [AATAATAATTCCGTAAGAAAGGGCTCGCAAAATGGCTGGAATTATTCGTTCTACACTTGCGGGAAGGAATGCGATCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCAAATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAAGCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTTGAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACGCCACCGGAAAACGTTGCCGAGCAGGTGCTTAAGTTGGCCAAAGAGAATTTTTTGATCGATGCCAGGCAGCCGTTCGGTGGGATGGAGAAGAAATTTGCATTTCTGTCGGCATGCGGCAAAGCGCTCGGGCATTGGGTGCCGAATTCAATGCTGCACGAGGTACAAACCGTGGAGGATGCCACGATATTCTACCAAACACCAATCGACACACGACTTCCGCTCGATGCGATACGCTCGGTAGAGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGATACGATGTTCGGTGGAAAGTCGGCCTTCCCGAAGAGTTCGACGGTTGTTACCGGGCTGAAGTACAAACAGAAATACCGTGGCCACGAGGCGAAGTAAATCTTGGCCATAGGCTGGGGTGGCAACGTTACCGGGGATGTAATGTAGGCGTTAATAGTGTGTTTGAAATAAAGGAACCCGTGGCAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTTCT] [+] EMBL CNS08ZFL [AATAATAATTCCGTAAGAAAGGGCTCGCAAAATGGCTGGAATTATTCGTTCTACACTTGCGGGAAGGAATGCGATCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCAAATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAAGCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTTGAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACGCCACCGGAAAACGTTGCCGAGCAGGTGCTTAAGTTGGCCAAAGAGAATTTTTTGATCGATGCCAGGCAGCCGTTCGGTGGGATGGAGAAGAAATTTGCATTTCTGTCGGCATGCGGCAAAGCGCTCGGGCATTGGGTGCCGAATTCAATGCTGCACGAGGTACAAACCGTGGAGGATGCCACGATATTCTACCAAACACCAATCGACACACGACTTCCGCTCGATGCGATACGCTCGGTAGAGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGATACGATGTTCGGTGGAAAGTCGGCCTTCCCGAAGAGTTCGACGGTTGTTACCGGGCTGAAGTACAAACAGAAATACCGTGGCCACGAGGCGAAGTAAATCTTGGCCATAGGCTGGGGTGGCAACGTTACCGGGGATGTAATGTAGGCGTTAATAGTGTGTTTGAAATAAAGGAACCCGTGGCAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7670#0 CCCGGCGCTGTCAGAGAGGAAAACAAAACACGAGCACGATTGTACAACACAATAATAATT 60 consensus_7670#1 --------------------------------------------------AATAATAATT 10 ********** consensus_7670#0 CCGTAAGAAAGGGCTCGCAAAATGGCTGGCATTATTCGTTCTACACTTGCGGGAAGGAAT 120 consensus_7670#1 CCGTAAGAAAGGGCTCGCAAAATGGCTGGAATTATTCGTTCTACACTTGCGGGAAGGAAT 70 ***************************** ****************************** consensus_7670#0 GCGGTCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCA 180 consensus_7670#1 GCGATCGCACTGCTCACCCAAAAGTCTGTGGATGTCACATGCTTCCGGTATGCCAGTTCA 130 *** ******************************************************** consensus_7670#0 AATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAA 240 consensus_7670#1 AATCGCGTGAAGCGCATCAAAAAGCCAGAAATTACCAATCGCGATGCGAATCAGGCCAAA 190 ************************************************************ consensus_7670#0 GCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTT 300 consensus_7670#1 GCGGCTGCAATGCGTGCGGAGGCGGAAGAGCAGAGCTTGCTGTACGAGGGCAAGCGGTTT 250 ************************************************************ consensus_7670#0 GAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACG 360 consensus_7670#1 GAATCGGTCGCACAATCCCTTTCCGCTCGAGGCTACTTACGCGCAATCAAACCCTACACG 310 ************************************************************ consensus_7670#0 CCACCGGAAAACGTTGCCGAGCAGGTGCTTAAGTTGGCCAAAGAGAATGGTTTGATCGAT 420 consensus_7670#1 CCACCGGAAAACGTTGCCGAGCAGGTGCTTAAGTTGGCCAAAGAGAATTTTTTGATCGAT 370 ************************************************ ********** consensus_7670#0 GCCAGGCAGCCGTTCGGTGGGATGGAGAAGAAATTTGCATTTCTGTCGGCATGCGGCAAA 480 consensus_7670#1 GCCAGGCAGCCGTTCGGTGGGATGGAGAAGAAATTTGCATTTCTGTCGGCATGCGGCAAA 430 ************************************************************ consensus_7670#0 GCGCTCGGGCATTGGGTGCCGAATTCAATGCTGCACGAGGTACAAACCGTGGAGGATGCC 540 consensus_7670#1 GCGCTCGGGCATTGGGTGCCGAATTCAATGCTGCACGAGGTACAAACCGTGGAGGATGCC 490 ************************************************************ consensus_7670#0 ACGATATTCTACCAAACACCAATCGACACACGACTTCCGCTCGATGCGATACGCTCGGTA 600 consensus_7670#1 ACGATATTCTACCAAACACCAATCGACACACGACTTCCGCTCGATGCGATACGCTCGGTA 550 ************************************************************ consensus_7670#0 GAGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGAT 660 consensus_7670#1 GAGCTGCCGGAAAATCTCCACATCCAGCAGGATTATGTGCGCTTCCATCCGGAAACGGAT 610 ************************************************************ consensus_7670#0 ACGATGTTCGGTGGAAAGTCGGCCTTCCCGAAGAGTTCGACGGTTGTGACCGGGCTGAAG 720 consensus_7670#1 ACGATGTTCGGTGGAAAGTCGGCCTTCCCGAAGAGTTCGACGGTTGTTACCGGGCTGAAG 670 *********************************************** ************ consensus_7670#0 TACAAACAGAAATACCGTGGCCACGAGGCGAAG-AAATCTTGGCCATAGGCTGGGGTGGC 779 consensus_7670#1 TACAAACAGAAATACCGTGGCCACGAGGCGAAGTAAATCTTGGCCATAGGCTGGGGTGGC 730 ********************************* ************************** consensus_7670#0 AACCGTTACCGGGGATGTAATGTAGGCGTTAATAGTGTGTTTGAAATAAAGGAACCCCGT 839 consensus_7670#1 AAC-GTTACCGGGGATGTAATGTAGGCGTTAATAGTGTGTTTGAAATAAAGGAACCC-GT 788 *** ***************************************************** ** consensus_7670#0 GGCAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTTCCC 899 consensus_7670#1 GGCAAATTAAAAAAAAAAAAAAA------------AAAAAAAAAAAGGCCACATGTTCT- 835 *********************** *************** ******* consensus_7670#0 CCCC 903 consensus_7670#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||