These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 695 fasta sequence [ATACGAAATTCCGTAGCCGTGCCCTGCGACAACGCGTTCCAGAAAAATCCCACAGCTCAAGGTGACGAAACCGTAACACGCCTGCCACATA---TCGT-GCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGTAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGATTTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAGGCGAACAAAACCAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTTTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAGGGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAAGCTCG-ACCGCAAACAGTCCGCACTGGAAGATTGCACCAAAGCGCTAGAGTACAATCCCCACTAC] [+] EMBL CNS08XG0 [ATACGAAATTCCGTAGCCGTGCCCTGCGACAACGCGTTCCAGAAAAATCCCACAGCTCAAGGTGACGAAACCGTAACACGCCTGCCACATA TCGT GCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGTAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGATTTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAGGCGAACAAAACCAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTTTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAAAGGCCAGGGCCATCCTGTACGCGAATCGTGCCG ] [+] EMBL BM622872 [ CCG GCCCTGCGA CGTTCCAGAAAAGTCCCACATCTCGAGGTGACGAAACCGTAACACGCCTGCAACATATCCTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCCGTCCGGAGGCCACCCGACTCGGACGCGGAAGAGTTTGTCGACTGTGTGAATGGACCGGAGGTGCCGCAATCCCAAAACAAACCGACGACAGCAGAGCAAGAGAATGAGTCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGATTCACCACCCGAGGACGATCTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAAGCGAACAAAACCAAAGCGGATGAGCTGAAGCAGCAGGGCAATGAGCTGTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCGCTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAGGGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAAGCTCG ACCGCAAACAGTC ] [+] EMBL BX620629 [ TGCCCTGCGACAACGCGTTCCAGAAAACTCCCACAGCTCAAGGTGACGAAACCGTAGCACGCCTGCCACATATCCTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGAAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGATTTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAGGCGAACAAAACCAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTGTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAGGGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAAGCTCG ACCGCAAACAGTCCGCACTGGAAGATTGCACCAAAGCGCTAGAGTACAATCCCCACTAC] [+] EMBL BX604817 [ ACGAAACCGTAACACGCCTGCCACATA TCGT GCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGTAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGA TTAATAGA ] [+] EMBL CNS08O6Y [ GAAACCGTAACACGCCTGCCACATA TCGT GCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGTAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGATTTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAGGCGAACAAAACCAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTTTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAAGGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAA CTCGTACCGCAAACAGT ] consensusID : consensus_7676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [AGGCAGAATTGCCCGAGGTNATAGAAATTCCGTAGTCGTGCCCTGCGACAACGCGTTCCAGAAAACTCCCACAGCTCAATGGTGACGAAACCTGTAGCACTGCCTGCCACATATACTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGGAAAAGGTGACTGGGACTGTCGGTCCGGAGGCCACCGACTACGGACGCGGAAGCAGTATGTACGACTGCGTGAATGGGCCGGAGGTTGTCGGCGAATACCCAAATGAAACCGANGACAGCAGNGTGAAGCAGAGACTGCACTCATGTCGGACAGGTTACGCNGGGAACGTCGGAAGAGGCNATCAGCCAACCCGAGGACCGAGTTNTACTAGACGAAAGACTCCCAGCGGTGACTTACGAGCTTGTTGGGCACTGGTCCGGCAGGAGGGAACTTGGCAGCGCCTGGAACCNAAANAACCAAAAGCNGGACGGAAGGCTTGCCACGCA] [+] EMBL AL696120 [AGGCAGAATTGCCCGAGGTNATAGAAATTCCGTAGTCGTGCCCTGCGACAACGCGTTCCAGAAAACTCCCACAGCTCAATGGTGACGAAACCTGTAGCACTGCCTGCCACATATACTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGGAAAAGGTGACTGGGACTGTCGGTCCGGAGGCCACCGACTACGGACGCGGAAGCAGTATGTACGACTGCGTGAATGGGCCGGAGGTTGTCGGCGAATACCCAAATGAAACCGANGACAGCAGNGTGAAGCAGAGACTGCACTCATGTCGGACAGGTTACGCNGGGAACGTCGGAAGAGGCNATCAGCCAACCCGAGGACCGAGTTNTACTAGACGAAAGACTCCCAGCGGTGACTTACGAGCTTGTTGGGCACTGGTCCGGCAGGAGGGAACTTGGCAGCGCCTGGAACCNAAANAACCAAAAGCNGGACGGAAGGCTTGCCACGCA] consensusID : consensus_7676#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [CCGAGGTTAAAAAACTGTAAATACGAAATTCGTAGCCGTGCCCTGCGACGTTCCAGAAAAGTCCACATCTCGAGGTGACGAAACCGTAACACGCCTGCAACATATCCTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGAGNTGTGCTCCCGCTTCCCGCGCACGCGCCCCACCCCCCGCACCCTCGCGCCACCGCCCGCGCCANCGCACGCCTCCCGCTCCCACCCTGCTGCTGCANCTGGCACCCGCGGCCACGCCGGCTTGGCCCCCGGGCCGAACACACNTCGCCCCCAAGTAACAATCACGCCCAANATGANGCCCCCCGGGAAAGCCGGCAAACGCNAGATGGTCCAAGAGGGCAAAGCGTCCGACAACGGGCAACGGGCAAAGANCAGCTTGGAANGGNTTTCGCAGCTGGGGGCTTCNCGGAAAACCAAGGGGGGGT] [+] EMBL AL933331 [CCGAGGTTAAAAAACTGTAAATACGAAATTCGTAGCCGTGCCCTGCGACGTTCCAGAAAAGTCCACATCTCGAGGTGACGAAACCGTAACACGCCTGCAACATATCCTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGAGNTGTGCTCCCGCTTCCCGCGCACGCGCCCCACCCCCCGCACCCTCGCGCCACCGCCCGCGCCANCGCACGCCTCCCGCTCCCACCCTGCTGCTGCANCTGGCACCCGCGGCCACGCCGGCTTGGCCCCCGGGCCGAACACACNTCGCCCCCAAGTAACAATCACGCCCAANATGANGCCCCCCGGGAAAGCCGGCAAACGCNAGATGGTCCAAGAGGGCAAAGCGTCCGACAACGGGCAACGGGCAAAGANCAGCTTGGAANGGNTTTCGCAGCTGGGGGCTTCNCGGAAAACCAAGGGGGGGT] consensusID : consensus_7676#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [CAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGNACGAAGTTATCGAAAAGGTGATGGGACTGTCCGTCCGGAAGGGCCCAACCCCCTGTAACATTCCTGGNGGAACACGCCCGTGGCAAAGGNGAAGCGNTCTCTTCCCTCATGGGGAGTTCCTCCGAAAACCTTTGGGNTTGAGGTTTTTTGTCACAACTTTNGTGGGTAACCCCCTGGGTGGAAAATGGGCTTTTTGAGTCCCCCTGGNGCCACAAAATTACCCTCCCCCAATAAATAGAAGCTTATAATAAGATGCCCGGTAAACCGGCTAAAAACATGGGCCTAAGGCGNAAGGGCCCTAAGGCAACGGAAAATTTTGGGACCGTTT] [+] EMBL AL695797 [CAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGNACGAAGTTATCGAAAAGGTGATGGGACTGTCCGTCCGGAAGGGCCCAACCCCCTGTAACATTCCTGGNGGAACACGCCCGTGGCAAAGGNGAAGCGNTCTCTTCCCTCATGGGGAGTTCCTCCGAAAACCTTTGGGNTTGAGGTTTTTTGTCACAACTTTNGTGGGTAACCCCCTGGGTGGAAAATGGGCTTTTTGAGTCCCCCTGGNGCCACAAAATTACCCTCCCCCAATAAATAGAAGCTTATAATAAGATGCCCGGTAAACCGGCTAAAAACATGGGCCTAAGGCGNAAGGGCCCTAAGGCAACGGAAAATTTTGGGACCGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7676#0 --------------------ATACGAAATTCCGTAGCCGTGCCCTGCGACAACGCGTTCC 40 consensus_7676#1 AGGCAGAATTGCCCGAGGTNATA-GAAATTCCGTAGTCGTGCCCTGCGACAACGCGTTCC 59 consensus_7676#2 CCGAGGTTAAAAAACTGTAAATACGAAATTC-GTAGCCGTGCCCTGCGAC-----GTTCC 54 consensus_7676#3 ------------------------------------------------------------ consensus_7676#0 AGAAAAATCCCACAGCTCAA-GGTGACGAAACC-GTAACAC-GCCTGCCACATAT---CG 94 consensus_7676#1 AGAAAACTCCCACAGCTCAATGGTGACGAAACCTGTAGCACTGCCTGCCACATATACTCG 119 consensus_7676#2 AGAAAAGTCC-ACATCTCGA-GGTGACGAAACC-GTAACAC-GCCTGCAACATATCCTCG 110 consensus_7676#3 ------------------------------------------------------------ consensus_7676#0 TGCC-ATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACG 153 consensus_7676#1 TCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACG 179 consensus_7676#2 TCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACG 170 consensus_7676#3 ----------------------------CAAAGTGCTTCCAGAGGTTTCCAAAAGCGACG 32 ******************************** consensus_7676#0 ACGAACA-ATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGA-CGA 211 consensus_7676#1 ACGAACA-GTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGA-CGA 237 consensus_7676#2 ACGAACA-GTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGA-CGA 228 consensus_7676#3 ACGAACAAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGNACGA 92 ******* ********************************************** *** consensus_7676#0 AGTTATCG-AAAAGGTGA-TGGGACTGTCGGTCCGGAGGCCACCC--GACTCGGACGCGG 267 consensus_7676#1 AGTTATCGGAAAAGGTGACTGGGACTGTCGGTCCGGAGGCCACCG--ACTACGGACGCGG 295 consensus_7676#2 AGTTATCG-AAAAGGTGATGGGAGNTGTGCTCCCGCTTCCCGCGCACGCGCCCCACCCCC 287 consensus_7676#3 AGTTATCG-AAAAGGTGA-TGGGACTGTCCGTCCGGAAGGGCCCA--ACCCCCTGTAACA 148 ******** ********* ** *** *** * * consensus_7676#0 TAG-AGTTTGT-CGACTGCGTGAATGGGCCGGAGGT----GTCGCAATCCCAAAAGAAAC 321 consensus_7676#1 AAGCAGTATGTACGACTGCGTGAATGGGCCGGAGGTTGTCGGCGAATACCCAAATGAAAC 355 consensus_7676#2 CGCACCCTCGCGCCACCGCCCGCGCCANC-GCACGCCTCCCGCTCCCACCCTGCTGCTGC 346 consensus_7676#3 TTCCTGGNGGAACACGCCCGTG-GCAAAGGNGAAGCGNTCTCTTCCCTCATGGGGAGTTC 207 * * * * * * * * consensus_7676#0 CGACGACAGCAG-GG----GAAGAGAATGAA-TCATGTCG-ACAGGTAGCG---GGAACG 371 consensus_7676#1 CGANGACAGCAG-NGTGAAGCAGAGACTGCACTCATGTCGGACAGGTTACGCNGGGAACG 414 consensus_7676#2 ANCTGGCACCCGCGGCCACGCCGGCTTGGCCCCCGGGCCGAACACACNTCGC------CC 400 consensus_7676#3 CTCCGAAAACCT--------TTGGGNTTGAGGTTTTTTGTCACAACTTTNGTGGGTAACC 259 * * * * * *** * * consensus_7676#0 TCGGAAGAGG-AATCACC--ACCCGAGGAC---GATTTAATAGACGAA-GACTCCCAGCG 424 consensus_7676#1 TCGGAAGAGGCNATCAGCCAACCCGAGGACCGAGTTNTACTAGACGAAAGACTCCCAGCG 474 consensus_7676#2 CCAAGTAACAATCACGCCCAANATGANGCCC--CCCGGGAAAGCCGGCAAACGCNAGATG 458 consensus_7676#3 CCCTGGGTGGAAAATGGGCTTTTTGAGTCCC--CCTGGNGCCACAAAATTACCCTCCCCC 317 * ** * ** * consensus_7676#0 G-GACT-ACGAGTGTG----------GCCTGTCGGAGGAGGAACTGGAGGCGAACAAAAC 472 consensus_7676#1 GTGACTTACGAGCTTGTTGGGCACTGGTCCGGCAGGAGGGAACTTGGCAGCGCCTGGAAC 534 consensus_7676#2 G---TCCAAGAGGGCAAAGC------GTCCGACA-ACGGGCAACGGGCAAAGANCAGCTT 508 consensus_7676#3 AATAAATAGAAGCTTATAATAAGAT-GCCCGGTAAACCGGCTAAAAACATGGGCCTAAGG 376 * ** * * * * * consensus_7676#0 CAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTTTTCAAGCAGGGCGAGCACAGCCG 532 consensus_7676#1 CNAAANAACCAAA-------AGCNGGACGGAAGGCTTGCCACGCA--------------- 572 consensus_7676#2 GGAANGGNTTTCGC------AGCTGGGGGCTTCNCGGAAAACCAAGGGGGGGT------- 555 consensus_7676#3 CGNAAGGGCCCTAA------GGCAACGGAAAATTTTGGGACCGTTT-------------- 416 * ** consensus_7676#0 CTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAG 592 consensus_7676#1 ------------------------------------------------------------ consensus_7676#2 ------------------------------------------------------------ consensus_7676#3 ------------------------------------------------------------ consensus_7676#0 GGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAAGCTCGACCGCAAACAGTCCGC 652 consensus_7676#1 ------------------------------------------------------------ consensus_7676#2 ------------------------------------------------------------ consensus_7676#3 ------------------------------------------------------------ consensus_7676#0 ACTGGAAGATTGCACCAAAGCGCTAGAGTACAATCCCCACTAC 695 consensus_7676#1 ------------------------------------------- consensus_7676#2 ------------------------------------------- consensus_7676#3 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||