These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [AATCGCCCGAGGTTATAACAGNCACTTATGCAACTTTTGTACCGCTAATATNNATGAGTATCGTGTAGATAAACACAACATTNGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATGGATTNGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGTACCAACATGCATGCTGACTGCCAGCTCGGTGCATGCTGAGTCAANCACCTGCATCAAACCGGGCTGAAGGAGAATTTGCAACATNAAACATTCGTTTCTTCGGTGTNGCGGTAGAGGGAGGAGGCTGTATCTGGCTTTCAGTACAAATTTCTCCGTTGAAAAGCAGCGTCGGCGAACGATGACAGTTATCTGTGAGCCGTGACTGGTGTGCAGGTGGCCATCGATAGTGCTTCTGATCGAGTACCTGTCCGGGTGCTACCATCGATTACCACGACCGAGTCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTNCACGGTGAAATTGGACGTAGGCCCCGTAAGGTGTAAATACTTGATGTTTTAAAAGAGTAATGTACAAGATATAATCAACGCGTTCAATATTTAAGGANATGCAACAAAAGAATGACCAGACGACATNGNANAGNNANGATAACAATAAANATAACTAAAC] [+] EMBL AL930880 [AATCGCCCGAGGTTATAACAGNCACTTATGCAACTTTTGTACCGCTAATATNNATGAGTATCGTGTAGATAAACACAACATTNGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATGGATTNGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGTACCAACATGCATGCTGACTGCCAGCTCGGTGCATGCTGAGTCAANCACCTGCATCAAACCGGGCTGAAGGAGAATTTGCAACATNAAACATTCGTTTCTTCGGTGTNGCGGTAGAGGGAGGAGGCTGTATCTGGCTTTCAGTACAAATTTCTCCGTTGAAAAGCAGCGTCGGCGAACGATGACAGTTATCTGTGAGCCGTGACTGGTGTGCAGGTGGCCATCGATAGTGCTTCTGATCGAGTACCTGTCCGGGTGCTACCATCGATTACCACGACCGAGTCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTNCACGGTGAAATTGGACGTAGGCCCCGTAAGGTGTAAATACTTGATGTTTTAAAAGAGTAATGTACAAGATATAATCAACGCGTTCAATATTTAAGGANATGCAACAAAAGAATGACCAGACGACATNGNANAGNNANGATAACAATAAANATAACTAAAC] consensusID : consensus_7684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 633 fasta sequence [CCGCGAAAGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATA-TTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTAAAAAAAAAAAAAAAAAGGAAAAAA] [+] EMBL BM628623 [CCGCGAAAGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATATTTGATGGTTTAAAAAGTAA ] [+] EMBL BM656122 [ ccgGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAGCAAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTGGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGATTAACCCCTAAGGTGTAAATA TTGATGTTTTAA ] [+] EMBL BM586291 [ cCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATACGATGAGTATCGTGTAGATAAACACAACATTTACGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGCTCCGGGTTTCGTGTGGTTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATA TTGATGTTTT ] [-] EMBL CNS0919F [ TATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTACGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATA TTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTAAAAAAAAAAAAAAAAAGGAAAAAA] [+] EMBL BM654481 [ cCGTGTAGATAAACACAACATTTACGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGCTCCGGGTTTCGTGTGGTTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATA TTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTC ] consensusID : consensus_7684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence [CCGGGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATCATCATGAGTATCGTGTAGAAAAACAAAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATATTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTTATTTTAGTTCTTTC] [+] EMBL BM575625 [CCGGGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATCATCATGAGTATCGTGTAGAAAAACAAAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATATTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTTATTTTAGTTCTTTC] [+] EMBL BM628841 [ ccgCATGAGTATCGTGTAGAAAAACAAAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATATTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTTAaaatcgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7684#1 CCGCGAAAGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAA-TTTTGTA 59 consensus_7684#2 ----CCGGGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAA-TTTTGTA 55 consensus_7684#0 -----------------AATCGCCCGAGGTTATAA-CAGNCAC-TTATGCAACTTTTGTA 41 * *** * **** *** *** ******** ******* consensus_7684#1 CCGC-AAT-ATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAACGAATC 117 consensus_7684#2 CCGC-AATCATCATGAGTATCGTGTAGAAAAACAAAACATTTGCGCAGCAAAAACGAATC 114 consensus_7684#0 CCGCTAATATNNATGAGTATCGTGTAGATAAACACAACATTNGCGCAGCAAAAACGAATC 101 **** *** **************** ***** ****** ****************** consensus_7684#1 GAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGC 177 consensus_7684#2 GAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGC 174 consensus_7684#0 GAAATGAACGCAATCGTGCAGAGACGCATGGATTNGTGCTTCTCGTCGCTGCTTCAACGC 161 ***************************** * * ************************* consensus_7684#1 CGATTGTTGTCGAGCGCGGCACCAA-ATGCA-GCTGA-TGCCAGCTCGGTGCA-GCTGAG 233 consensus_7684#2 CGATTGTTGTCGAGCGCGGCACCAA-ATGCA-GCTGA-TGCCAGCTCGGTGCA-GCTGAG 230 consensus_7684#0 CGATTGTTGTCGAGCGCGGTACCAACATGCATGCTGACTGCCAGCTCGGTGCATGCTGAG 221 ******************* ***** ***** ***** *************** ****** consensus_7684#1 C--AACACCTGCATCAACC--GGCTGAAGGAGA-TTTGCAA---ACAAAATTCGTTTCTT 285 consensus_7684#2 C--AACACCTGCATCAACC--GGCTGAAGGAGA-TTTGCAA---ACAAAATTCGTTTCTT 282 consensus_7684#0 TCAANCACCTGCATCAAACCGGGCTGAAGGAGAATTTGCAACATNAAACATTCGTTTCTT 281 * ************ * ************ ******* ** *********** consensus_7684#1 CG-TGTTGCGGTAGAGGGAGGAGGCTGT-TCTGGCTTTCAGTACAAATT-CTCCGTTGAA 342 consensus_7684#2 CG-TGTTGCGGTAGAGGGAGGAGGCTGT-TCTGGCTTTCAGTACAAATT-CTCCGTTGAA 339 consensus_7684#0 CGGTGTNGCGGTAGAGGGAGGAGGCTGTATCTGGCTTTCAGTACAAATTTCTCCGTTGAA 341 ** *** ********************* ******************** ********** consensus_7684#1 AAGCAGC-TCGGCGAA-GATGACA-TTATC-GTGAGCCGTGAC-GGTGTGCAGGTGGCCA 397 consensus_7684#2 AAGCAGC-TCGGCGAA-GATGACA-TTATC-GTGAGCCGTGAC-GGTGTGCAGGTGGCCA 394 consensus_7684#0 AAGCAGCGTCGGCGAACGATGACAGTTATCTGTGAGCCGTGACTGGTGTGCAGGTGGCCA 401 ******* ******** ******* ***** ************ **************** consensus_7684#1 TCGATAGTGCTTC-GATCGAGTACCTGTCCGGG-GCTACCATCGATTACCAC-ACCGAG- 453 consensus_7684#2 TCGATAGTGCTTC-GATCGAGTACCTGTCCGGG-GCTACCATCGATTACCAC-ACCGAG- 450 consensus_7684#0 TCGATAGTGCTTCTGATCGAGTACCTGTCCGGGTGCTACCATCGATTACCACGACCGAGT 461 ************* ******************* ****************** ****** consensus_7684#1 CTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGT 513 consensus_7684#2 CTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGT 510 consensus_7684#0 CTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGT 521 ************************************************************ consensus_7684#1 GGTGCCTCGTTCACGGTGAAATTGGAC-TAGCCCC--TAAGGTGTAAATA-TTGATGTTT 569 consensus_7684#2 GGTGCCTCGTTCACGGTGAAATTGGAC-TAGCCCC--TAAGGTGTAAATA-TTGATGTTT 566 consensus_7684#0 GGTGCCTCGTNCACGGTGAAATTGGACGTAGGCCCCGTAAGGTGTAAATACTTGATGTTT 581 ********** **************** *** *** ************* ********* consensus_7684#1 TAAAA-AGTAATGTA--AAATATAATCAACGCGTTCAATATTAAAAAAAAAAAAAAAAAG 626 consensus_7684#2 TAAAA-AGTAATGTA--AAATATAATCAACGCGTTCAATATTTATTTTAGTTCTTTC--- 620 consensus_7684#0 TAAAAGAGTAATGTACAAGATATAATCAACGCGTTCAATATTTAAGGANATGCAACAAAA 641 ***** ********* * *********************** * consensus_7684#1 GAAAAAA-------------------------------------------- 633 consensus_7684#2 --------------------------------------------------- consensus_7684#0 GAATGACCAGACGACATNGNANAGNNANGATAACAATAAANATAACTAAAC 692 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||