These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1803 fasta sequence [ACTCATGTAATGTAATGTGTTTTATGTTTTTGTGTAACGCATTCTGAAACATATTTTCGCTTTCTTGTGAACAGTGATTATTTACCATTTCTCGTTTAATTGCCTTTGATTTTAGCACTCCAGTTTTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGAAATTGTTTGTTAATTTTCTACAACAAACTGGTAAACAAAATATGCAATGTCATCCGGAAAAAGACACCAGGAAAAAGAAAACCCAAACGAAAATCATATTTGTATCGTGTTACTAAGTGTCTCCCTAAGAGTCTCATTTTTTCATTACATTTTCTTTCTCCCCTTTCTTTTGGTCGCTTGTAAAGCGAGAGAGTAAGTATAACTATGTAGGGAACGTTGAAGTGTTGCTGCAAAAAAGAGACACAAAACAAAGAATAAGTAAATCAATCAGCCTAAGTCTTGTTATGAGTGTTATGAAATTGATTATCAAACGATCAAACGAACGTTAAAACGAGCGCAGAAACAGAGACAGTTAAAACACAAAGCGAAGAAATCAAATAAGACGTGAACGTCAGCAAACATGTTTGAGAGATTGTGTAGTGTGAGTGTGAGTGTATCGCAAATATTATCGCAATAGAGGAGGACTATGATAGAAATGACGGATTGAAACGTCAAAGAAAATAAGTCTAATTGAAGACAAAGAGAAAGATTTAAATCATAAATCCATACACTCACGCTAACATACATTAAAGCTCATACACCAACAT--ACACACACACATCCCTACAAGCAACGCGTCACATAAAACTGCCCGATTGTTGTAAATGAAAAATAAATAATTATATAATAAAGATTAATAACGCGATACTACCACAAACAACACGGCGAATGGATATATTAATAAAAGAGAATACAAATAAAAGTAACAAAAAC----AC--ACAAACAATCCTTACGTTATTGCACTGTGTATGTGTGTGCGTTTGTCACTCGCTCTGGTGGGACAGTAAACACGTAAACACGCGAGCGATTAAATAGTATGGTAAAGGAAAAATAAAAT---AAAAATGGTACCAAATCAACCGAGCGCTCGTAAAAATAAATAAAAAAAAAGGTAATTAAGTAATTTAAAAGATGAATAAACAAACAAAACACAGAAAACACTCTAGTACACTGCGAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAAGAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACGATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCAAACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAATTAATAAGAACACACATTCACTTACACACTTTCATGAACAGCACACTACCTTAAGTCCAGTAGTGGGACGCACGTGCCCAACGCAGGCCGAGGTTTTGTTACCTTGTTGGTTTTCACATAGACACAGCTGTAGACTTAAGGAAGAGAGAAAGAGATAGAGAGAGAGAAGGAGATAGAAGATTGCCAGTCCTATAGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATACTTTCTCTCTATCACAAAACCACATACAACACATCGACACGCACAGAGAG--ATACACACAAATACACGCCAAACACAGGAACGTGTGGGAAAAAAAATCCAGAAACCAGCAATTTAAAGGGAAGTAAAAACTGTAACGAAGTAAACACGAGACAGAAAATGGAAAACGAAG] [+] EMBL BX624849 [ACTCATGTAATGTAATGTGTTTTATGTTTTTGTGTAACGCATTCTGAAACATATTTTCGCTTTCTTGTGAACAGTGATTATTTACCATTTCTCGTTTAATTGCCTTTGATTTTAGCACTCCAGTTTTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGAAATTGTTTGTTAATTTTCTACAACAAACTGGTAAACAAAATATGCAATGTCATCCGGAAAAAGACACCAGGAAAAAGAAAACCCAAACGAAAATCATATTTGTATCGTGTTACTAAGTGTCTCCCTAAGAGTCTCATTTTTTCATTACATTTTCTTTCTCCCCTTTCTTTTGGTCGCTTGTAAAGCGAGAGAGTAAGTATAACTATGTAGGGAACGTTGAAGTGTTGCTGCAAAAAAGAGACACAAAACAAAGAATAAGTAAATCAATCAGCCTAAGTCTTGTTATGAGTGTTATGAAATTGATTATCAAACGATCAAACGAACGTTAAAACGAGCGCAGAAACAGAGACAGTTAAAACACAAAGCGAAGAAATCAAATAAGACGTGAACGTCAGCAAACATGTTTGAGAGATTGTGTAGTGTGAGTGTGAGTGTATCGCAAATATTATCGCAATAGAGGAGGACTATGATAGAAATGACGGATTCNAACGTCAAAGAAAATAAGTCTAATTGAAGA GAAGA AAAGA TTAAATCAT AATCTATACACTCACGCT ACATACATTAAg ] [+] EMBL BM624347 [ ccgTATGAAATTGATTATCAAACGATCAAACGAACGTTAAAACGAGCGCAGAAACTGAGACAGTTAAGAAACAAAGCGAAGAAATCAAATAAGACGTGAACGTCAGCAAACATGTTTGAGAGATTGTGTAGTGTGAGTGTGAGTGTATCGCAAATATTATCGCAATAGAGGAGGACTATGATAGAAATGACGGATTGAAACGTCAAAGAAAATAAGTCTAATTGAAGACAAAGAGAAAGATTTAAATCATAAATCCATACACTCACGCTAACATACATTAAAGCTCATACACCAACAT ACACACACACATCCCTACAAGCAACGCGTCACATAAAACTGCCCGATTGTTGTAAATGAAAAATAAATAATTATATAATAAAGATTAATAACGCGATACTACCACAAACAACACGGCGAATGGATATATTAATAAAAGAGAATACAAATAAAAGTAACAAAAAC AC ACAAACAATCCTTACGTTATTGCACTGTGTATGTGTGTGCGTTTGTCACTCGCTCTGGTGGGACAGTAAACACGTAAACACGCGAGCGATTAAATAGTATGGTAAAGGAAAAATAAAAT AAAAATGGTACCAAATCAACCGAGCGCTCGTAAAAATAAATAAAAAAAAAGGTAATTAAGTAATTTAAAAGATGAATAAACAAACAAAAC ] [+] EMBL BM601069 [ ccgGAGATTGTGTAGTGTGAGTGTGAGTGTATCGCAAATATTATCGCAATAGAGGAGGACTATGATAGAAATGACGGATTGAAACGTCAAAGAAAATAAGTCTAATTGAAGAGAAAGAACAAGATTTAAATCATAAATCCATACACTCACGCCAACACACATTAAAGCTCATACACCGACATAAACACACACACATCCCTACAAGCAACGCGTCACATAAAACTGCCCGATTGTTGTAAATGAAAAATAAATAAATATATTATAAAGATTAATAACGCGATACTACCACAAACAACACGGCGAATGGATATATTCATAAAAGAGAATACAAATAAA ] [+] EMBL BM653509 [ ccgAAGAGAATACAAATAAAAGTAACAAAAACAAAAACAAACAAACAACCCTTACATTATTGCACTGTGTATGTGTGTGCGTGTGTCACTCGCTCCGGTGGGACGGTAAACACGTAAACACGCGAGCGATTAAATAGTATGGTGAAGGAAAAATAAAATTTAAAAAACGGTACCAAATCAACCGAGCGCTCGTAAAAATAAAT TAAAAAAAGGTAATTAAGTAATTTAAAAGATGAATAAACAAACAAAACACAGAAAACACTCTAGTACACTGCGAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAAGAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACGATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCAAACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAAT ] [+] EMBL BM621947 [ ccGGTAATTAAGTAATTTAAAAGATGAATAAACAAACAAAACACAGAAAACACTCTAGTACACTGCGAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAAGAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACGATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCAAACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAATTAATAAGAACACACATTCACTTACACACTTTCATGAACAGCACACTACCTTAAGTCCAGTAGTGGGACGCACGTGCCCAACGCAGGCCGAGGTTTTGTTACCTTGTTGGTTTTCACATAGACACAGCTGTAGACTTAAGGAAGAGAGAAAGAGATAGAGAGAGAGAAGGAGATAGAAGATTGCCAGTCCTATAGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATACTTTCTCTCTATCACAAAACCACATACAACACATCGACACGCACAGAGAG ATACACACAAATACACGCCAAACA ] [+] EMBL BM599344 [ ccgAGAAAACACTCTAGTACACTGCGAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAAGAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACGATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCAAACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAATTAATAAGAACACACATTCACTTACACACTTTCATGAACAGCACACTACCTTAAGTCCAGTAGTGGGACGCACGTGCCCAACGCAGGCCGAGGTTTTGTTACCTTGTTGGTTTTCACATAGACACAGCTGTAGACTTAAGGAAGAGAGAAAGAGATAGAGAGAGAGAAGGAGATAGAAGATTGCCAGTCCTATAGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATACTTTCTCTCTATCACAAAACCACATACAACACATCGACACGCACAGAGAG ATACACACAAATACACGCCAAACACAGGAACGTGTGGGAAAAAAAATCCAGAAACCAGCAATTTAAAGGGAAGTAAAAACTGTAACGAAGTAAACACGAGACAGAAAATGGAAAACGAAG] [+] EMBL BX610873 [ AGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATACTTTCTCTCTATCACAAAACCACATACAATACATCGACACGCACAGAGAGACACACACACAAATACACGCCAAACACAGGA ] consensusID : consensus_7698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 856 fasta sequence [GCAGAATCCCGNCGGTATTCTTTGTGTACGCATTCGGAAATATATTTTCCTTTTGTTGTGAACAGTGATTATTCACCATTTCTCGGTTAATATGCCTTTGATTTTAGCACTCCAGTTGTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGNNACATTGTTTGTGTAATATTTTTACAACGCAACTGGGTAAACAAAATATGCAATGTCATCCGTACACCAGGAAAAAGAAAACCAAACGAAGATGTNCTCATGTTGTATCGTGTTACTAAATGTCTACCCTAAGAGTCTCATNAATTTCATTACATTATNACTTATACTACCCCTTTCTATTAAGGTACGCTATGTAAAGCGAGCAGNAGTAANGTNATAAACTATGTAGGGAACGTTGAACGTAGTTTGCTTGCGAACAAANAGAGACACAAAACACAAGAACTAACGTANACTCAATCAGACCTAAGTCTTGTTAATGAGTGTTCATAGACACACTTGGTTTANTCCAAACGGANTCACACACGAACCGTTACANACGANGCGCAGAACACTGAGGACCAAGTTAAGAAACACCCACAAGCGGAAACAGAAAAATTCCACACACTTAAACACAACCCNGGTTGAAANACCGTTCCCTACGCNCAACCATTAGTTTNCTGGAACGNCACGCACTCNCGGGTGGTNAGGTGGTTGGAAAGCTTGGTTAGGAACGTTGGGNTCNTTCCCGGCACACAACTNACTTTCACTCCGCCCACACTANCAGAAGGGCAGGGACACTCAATATGAANTGTAAGCAAAACATTGGAANCCGGGGAACTTTAGTNCAACACCCGTCCCAACAGCGANAAACACTNA] [+] EMBL AL695511 [GCAGAATCCCGNCGGTATTCTTTGTGTACGCATTCGGAAATATATTTTCCTTTTGTTGTGAACAGTGATTATTCACCATTTCTCGGTTAATATGCCTTTGATTTTAGCACTCCAGTTGTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGNNACATTGTTTGTGTAATATTTTTACAACGCAACTGGGTAAACAAAATATGCAATGTCATCCGTACACCAGGAAAAAGAAAACCAAACGAAGATGTNCTCATGTTGTATCGTGTTACTAAATGTCTACCCTAAGAGTCTCATNAATTTCATTACATTATNACTTATACTACCCCTTTCTATTAAGGTACGCTATGTAAAGCGAGCAGNAGTAANGTNATAAACTATGTAGGGAACGTTGAACGTAGTTTGCTTGCGAACAAANAGAGACACAAAACACAAGAACTAACGTANACTCAATCAGACCTAAGTCTTGTTAATGAGTGTTCATAGACACACTTGGTTTANTCCAAACGGANTCACACACGAACCGTTACANACGANGCGCAGAACACTGAGGACCAAGTTAAGAAACACCCACAAGCGGAAACAGAAAAATTCCACACACTTAAACACAACCCNGGTTGAAANACCGTTCCCTACGCNCAACCATTAGTTTNCTGGAACGNCACGCACTCNCGGGTGGTNAGGTGGTTGGAAAGCTTGGTTAGGAACGTTGGGNTCNTTCCCGGCACACAACTNACTTTCACTCCGCCCACACTANCAGAAGGGCAGGGACACTCAATATGAANTGTAAGCAAAACATTGGAANCCGGGGAACTTTAGTNCAACACCCGTCCCAACAGCGANAAACACTNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7698#0 ACTCATGTAATGTAATGTGTTTTATGTT-TTTGTGTAACGCATTCTGAAACATATTTTCG 59 consensus_7698#1 ---------GCAGAATCCCGNCGGTATTCTTTGTGTA-CGCATTCGGAAATATATTTTCC 50 *** * ** ******** ******* **** ******** consensus_7698#0 CTTTCTTGTGAACAGTGATTATTTACCATTTCTCGTTTAAT-TGCCTTTGATTTTAGCAC 118 consensus_7698#1 TTTTGTTGTGAACAGTGATTATTCACCATTTCTCGGTTAATATGCCTTTGATTTTAGCAC 110 *** ****************** *********** ***** ****************** consensus_7698#0 TCCAGTTTTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGAAA--TTGTTT 176 consensus_7698#1 TCCAGTTGTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGNNACATTGTTT 170 ******* ***************************************** * ****** consensus_7698#0 GT-TAAT-TTTCTACAACA-AACTGG-TAAACAAAATATGCAATGTCATCCGGAAAAAGA 232 consensus_7698#1 GTGTAATATTTTTACAACGCAACTGGGTAAACAAAATATGCAATGTCATCCGTA------ 224 ** **** *** ****** ****** ************************* * consensus_7698#0 CACCAGGAAAAAGAAAACCCAAACGAAAATCATAT----TTGTATCGTGTTACTAAGTGT 288 consensus_7698#1 CACCAGGAAAAAGAAAACC-AAACGAAGATGTNCTCATGTTGTATCGTGTTACTAAATGT 283 ******************* ******* ** * ***************** *** consensus_7698#0 CT-CCCTAAGAGTCTCATTT-TTTCATTACATTTTCTTTCT-----CCCCTTTCTTTT-- 339 consensus_7698#1 CTACCCTAAGAGTCTCATNAATTTCATTACATTATNACTTATACTACCCCTTTCTATTAA 343 ** *************** ************ * * ********* ** consensus_7698#0 GGT-CGCT-TGTAAAGCGAG--AGAGTAAG--TATAA-CTATGTAGGGAACGTTGAA--- 389 consensus_7698#1 GGTACGCTATGTAAAGCGAGCAGNAGTAANGTNATAAACTATGTAGGGAACGTTGAACGT 403 *** **** *********** ***** **** ******************* consensus_7698#0 -GTGTTGCTGCAAA---AAAGAGACACAAAACA-AAGAATAA--GTAAA-TCAATCAG-C 440 consensus_7698#1 AGTTTGCTTGCGAACAAANAGAGACACAAAACACAAGAACTAACGTANACTCAATCAGAC 463 ** * *** ** * ************** ***** * *** * ******** * consensus_7698#0 CTAAGTCTTGTTA-TGAGTGTTATGAAATTGATTATCAAACGATCAAACGAACGTTAAAA 499 consensus_7698#1 CTAAGTCTTGTTAATGAGTGTTCATAGACACACTTGGTTTANTCCAAACGGANTCACACA 523 ************* ******** * * * * ****** * * * consensus_7698#0 CGAGCGCAGAAACAGAGACAGTTAAAACACAAAGCGAAGAAATCAAATAAGACGTGAACG 559 consensus_7698#1 CGAAC-CGTTACANACGANGCGCAGAACACTGAG-GACCAAGTTAAGAAACACCCACAAG 581 *** * * * ** * ***** ** ** ** * ** ** ** * * consensus_7698#0 TCAGCAAACATGTTTGAGAGATTGTGTA-GTGTGAGTGTGAGTGTATCGCAAATATTATC 618 consensus_7698#1 C--GGAAACA-----GAAAAATTCCACACACTTAAACACAACCCNGGTTGAAANACCGTT 634 * ***** ** * *** * * * * *** * * consensus_7698#0 GCAATAGAGGAGGACTATGATAGAAATGACGGATTGAAACGTCAAAGAAAATAAGTCTAA 678 consensus_7698#1 CC--CTACGCNCAACCATTAGTTTNCTGGAACGNCACGCACTCNCGGGTGGTNAGGTGGT 692 * * ** ** * ** ** * * ** consensus_7698#0 TTGAAGACAAAG--AGAAAGATTTAAATCATAAATCCATACACTCACGCTAACATACATT 736 consensus_7698#1 TGGAAAGCTTGGTTAGGAACGTTGGGNTCNT---TCCCGGCACACA-ACTNACTTTCACT 748 * *** * * ** ** ** ** * *** *** ** ** ** * ** * consensus_7698#0 AAAGCTCATACACCAACATACACACACACATCCC-TACAAGCAACGCGTCACATAAAACT 795 consensus_7698#1 CC-GCCCACACTANCAGAAGGGCAGGGACACTCAATATGAANTGTAAGCAAAACATTGGA 807 ** ** ** * * ** *** * ** * * * * * consensus_7698#0 GCCCGATTGTTGTAAATGAAAAATAAATAATTATA-TAATAAAGATTAATAACGCGATAC 854 consensus_7698#1 ANCCGGGGAACTTTAGTNCAACACCCGTCCCAACAGCGANAAACACTNA----------- 856 *** * * * ** * * * * * *** * * * consensus_7698#0 TACCACAAACAACACGGCGAATGGATATATTAATAAAAGAGAATACAAATAAAAGTAACA 914 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 AAAACACACAAACAATCCTTACGTTATTGCACTGTGTATGTGTGTGCGTTTGTCACTCGC 974 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 TCTGGTGGGACAGTAAACACGTAAACACGCGAGCGATTAAATAGTATGGTAAAGGAAAAA 1034 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 TAAAATAAAAATGGTACCAAATCAACCGAGCGCTCGTAAAAATAAATAAAAAAAAAGGTA 1094 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 ATTAAGTAATTTAAAAGATGAATAAACAAACAAAACACAGAAAACACTCTAGTACACTGC 1154 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 GAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAA 1214 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 GAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACG 1274 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 ATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCA 1334 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 AACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAA 1394 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 TTAATAAGAACACACATTCACTTACACACTTTCATGAACAGCACACTACCTTAAGTCCAG 1454 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 TAGTGGGACGCACGTGCCCAACGCAGGCCGAGGTTTTGTTACCTTGTTGGTTTTCACATA 1514 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 GACACAGCTGTAGACTTAAGGAAGAGAGAAAGAGATAGAGAGAGAGAAGGAGATAGAAGA 1574 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 TTGCCAGTCCTATAGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATAC 1634 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 TTTCTCTCTATCACAAAACCACATACAACACATCGACACGCACAGAGAGATACACACAAA 1694 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 TACACGCCAAACACAGGAACGTGTGGGAAAAAAAATCCAGAAACCAGCAATTTAAAGGGA 1754 consensus_7698#1 ------------------------------------------------------------ consensus_7698#0 AGTAAAAACTGTAACGAAGTAAACACGAGACAGAAAATGGAAAACGAAG 1803 consensus_7698#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||