These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1134 fasta sequence [TTTTTGTTAGATACGCTGCGAATATACGTTTTTTTTTATTATTGCATTTCTGTTATGAGTATGCGTTGCGTTCCTTTGAAAAAGTGTTGAAGTCCAAAACGAAAATAAAAACAAAAATAAGCTAGAACAAGTTTATATGGGTGTGTATGGATGCTTCGATATAAATGTGCTGTGTCCTGTGCTACTGAAACTGAATGCACAACAACCTCAACTCACTAGGCAAAAAGCCGAGCTGATTTCTGACCGACTTTTGCTGCAGTTGCTACAGTTCCCCCGTTCTCTCGCTACACGTTTGCGTTAGTCCTACCGAAAGCACCGCTGATTTGTTTGAACAGGTTGGCATTATTATCAAGCCACAACAATCATTCAGGAAGGCACACGTTTTCTTCTTTTCAACGCTTCGTTTATATCGCCTTGCCGCCCGGCCCGCTGGCCCCCTGGTTCTATCCACCCCTTCGTTCACGCACCGTGCCGGATGATGAGCATCAACATTTACTAAAAGGCTAGGCATTGCAATCGTGGTTTTGTTTACCGAGAGAGACTCCCTCCCCCTGTTC-T-CCCTCTGGTGATGGTGGTGGTGCTGGTGTGTACAGCACACTTTTCCACCCCGATGTAACAAGGTGTCAAAACCGGTGCGCGCGCGAGGGGTGAAAATTCACAATCATCTCCAACGCGGCACCGACGGACACGCAACTCCTCCCCTCTTCTAGGCCACCTTTTCTCCAACACCGAGTGAATTCATAACTACACTGCACACGGACATTAAGGTTAGTTAGCATACAAAGGCAAGCGGGTCGACGAGAATCATCACCATCATTTTGAGTTTTAACGGGATTTTAGTTTTTTGTCTTGTTTTGTTGCTTTATGCTTTCTTTTTCTTTTTCTTGGGCAAACGCAATGACCACCATCCCCCCATTGAAACATTCCGACACCCGGGGGATCGTCGTGTCCAGCTACTAAAGTAAGCTACCTTTATCCACGGTACACAATCACTTTCTTAGCGCTTCCATCATCATCGTGGAAAATGGTTTTTATTTAAACGGAAAAAATAACTCACAATGCGAAAAATGTTTTCTCCCAAAGACAGGCGGCGACCACCATTTTTAGCCGAACAGTTCATTTACCTCGGGCGAT] [+] EMBL AGA284411 [TTTTTGTTAGATACGCTGCGAATATACGTTTTTTTTTATTATTGCATTTCTGTTATGAGTATGCGTTGCGTTCCTTTGAAAAAGTGTTGAAGTCCAAAACGAAAATAAAAACAAAAATAAGCTAGAACAAGTTTATATGGGTGTGTATGGATGCTTCGATATAAATGTGCTGTGTCCTGTGCTACTGAAACTGAATGCACAACAACCTCAACTCACTAGGCAAAAAGCCGAGCTGATTTCTGACCGACTTTTGCTGCAGTTGCTACAGTTCCCCCGTTCTCTCGCTACACGTTTGCGTTAGTCCTACCGAAAGCACCGCTGATTTGTTT ] [-] EMBL BX621365 [ ATTTCTGACCGACTTTTGCTGCAGTTGCTACAGTTCTCCCGTTCTCTCGCTACACGTTTGCGTTAGTCCTACCGAAAGCACCGCTGATTTGTTTGAACAGGTTGGCATTATTATCAAGCCACAACAATCATTCAGGAAGGCACACGTTTTCTTCTTTTCAACGCTTCGTTTATATCGCCTTGCCGCCCGGCCCGCTGGCCCCCTGGTTCTATCCACCCCTTCGTTCACGCACCGTGCCGGATGATGAGCATCAACATTTACTAAAAGGCTAGGCATTGCAATCGTGGTTTTGTTTACCGAGAGAGACTCCCTCCCCCTGTTC T CCCTCTGGTGATGGTGGTGGTGCTGGTGTGTACAGCACACTTTTCCACCCCGATGTAACAAGGTGTCAAAACCGGTGCGCGCGCGAGGGGTGAAAATTCACAATCATCTCCAACGCGGCACCGACGGACACGCAACTCCTCCCCTCTTCTAGGCCACCTTTTCTCCAACACCGAGTGAATTCATAACTACACTGCACACGGACATTAAGGTTAGTTAGCATACAAAGGCAAGCGGGTCGACGAGAATCATCACCATCATTTTGAGTTTTAACGGGATTTTAGTTTTTTGTCTTGTTTTGTTGCTTTATGCTTTCTTTTTCTTTTTCTTGGGCAAA ] [-] EMBL AL931887 [ TGATGAGCA CAACATTTACTAAAAGGCTAGGCATTGCAATCGTGGTTTTGTTTACCGAGAGAGACTCCCTCCCCCTGTTCGTGCCCTCTGGTGATGGTGGTGGTGCTGGTGTGTACAGCACACTTTTCCACCCCGATGTAACAAGGTGTCAAAACCGGTGCGCGCGCGAGGGGTGAAAATTCACAATCATCTCCAACGCGGCACCGACGGACACGCAACTCCTCCCCTCTTCTAGGCCACCTTTTCTCCAACACCGAGTGAATTCATAACTACACTGCACACGGACATTAAGGTTAGTTAGCATACAAAGGCAAGCGGGTCGACGAGAATCATCACCATCATTTTGAGTTTTAACGGGATTTTAGTTTTTTGTCTTGTTTTGTTGCTTTATGCTTTCTTTTTCTTTTTCTTGGGCAAACGCAATGACCACCATCCCCCCATTGAAACATTCCGACACCCGGGGGATCGTCGTGTCCAGCTACTAAAGTAAGCTACCTTTATCCACGGTACACAATCACTTTCTTAGCGCTTCCATCATCATCGTGGAAAATGGTTTTTATTTAAACGGAAAAAATAACTCACAATGCGAAAAATGTTTTCTCCCAAAGACAGGCGGCGACCACCATTTTTAGCCGAACAGTTCATTTACCTCGGGCGAT] [-] EMBL AGA285717 [ ACACCGAGTGAATTCATAANTACACTGCACACGGACATTAAGGTTAGTTAGCATACAAAGGCAAGCGGGTCGACGAGAATCATCACCATCATTTTGAGTTTTAACGGGATTTTAGTTTTTTGTCTTGTTTTGTTGCTTTATGCTTTCTTTTTCTTTTTCTTGGGCAAACGCAATGACCACCATCCCCCCATTGAAACATTCCGACACCCGGGGGATCGTCGTGTCCAGCTACTAAAGTAAGCTACCTTTATCCACGGTACACAATCACTTTCTTAGCGCTTCCATCATCATCGTGGAAAAa ] consensusID : consensus_7700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1082 fasta sequence [CCGGAAAGATAGGAGCGAGGCAAAAACATCCGTGGAACGAGCTCCTTCGAGAAAAAGGGAACAAGAACCCAACTGGAAGGGACACTTCGTTCTCCACGATAGACTGTGTGTGTGTGTGCGAGTATGTGCTTGTATGATTGTATGTGGATTGAGTGTGGCACAAAAAAAATGTGAGGAAAAACGAAACCGAACCGAACCACATTGTGCATTGGAAAGGGAGAGGGGAGAATGAACGGTCAAAGGGTCCAGAACTGGCAGCGAAAGGAAACAGAAAAGAGGATAGGAAGGATAGAGTCGATAAAAGGGGCATGATGGTGAAGCATGGGGGTATTACTACACTACTAACACATTGCTGCAGCCACACTTGGAGCTGGTTACGCTGGAGAGAGGACAAGAACAACAACAACAAAAACTATCAAGATCTTGTTTTCGTTTTTACATTAAACTATTCTTTTCTCGGCCCATGAGTCATAACATCTTGCACTTGTCTCCGGCGAACCAGTTCTCTCCTCGGTGCTAGAGAGTTCTGGTAGCGAATGTCGAGAATCATCATCACGTATCCAGGGGCTCGTACAGGAGTGTGCGAGAGTGTGTTTTTTTAAATCGTTCTACAATACATCACAAACAAGAAATTAAAAAAAAAGAATGACGAAACATTGTATGTCACGTAGGCACACATGTATGAGCTGGTAAATACTGATGCAACACTAACGTCCGGCAGCGCCTAAATTGATCACCCCAAAATAATAGCTAGAATTAAAAGTTTACTCAGAACCTCTGTTCTTGCCACCCTTATCATTTGTTTCTCTTATCAAGAGTCTTCCAACAAACAAATTATGTATCGAATTTCGAGGACAGAGTCTCCAAAGCTCTCCGTCGGCCTACATCTTGCCAAAATTGATGAATATGAAAAGAAAGAGTAGATCTTTAACGACCAAGTCCGTCAAGTCCCATTTATTATGTTTCTTTTGTAAAGCGGTGCGGTTTTCGCTCACGCAACAATGTGAACTATCCGGCTAAAAATGGTGGTTCGCCGCCTGTCTTTGTGAGAAAACATTTTTCGCATTGTGAGTTATTTTTTT] [+] EMBL BM623860 [CCGGAAAGATAGGAGCGAGGCAAAAACATCCGTGGAACGAGCTCCTTCGAGAAAAAGGGAACAAGAACCCAACTGGAAGGGACACTTCGTTCTCCACGATAGACTGTGTGTGTGTGTGCGAGTATGTGCTTGTATGATTGTATGTGGATTGAGTGTGGCAC AAAAAAATGTGAGGAAAAACGAAACCGAACCGAACCACATTGTGCATTGGAAAGGGAGAGGGGAGAATGAACGGTCAAAGGGTCCAGAACTGGCAGCGAAAGGAAACAGAAAAGAGGATAGGAAGGATAGAGTCGATAAAAGGGGCATGATGGTGAAGCATGGGGGTATTACTACACTACTAACACATTGCTGCAGCCACACTTGGAGCTGGTTACGCTGGAGAGAGGACAAGAACAACAACAACAAAAACTATCAAGATCTTGTTTTCGTTTTTACATTAAACTATTCTTTTCTCGGCCCATGAGTCATAACATCTTGCACTTGTCTCCGGCGAACCAGTTCTCTCCTCGGTGCTAGAGAGTTCTGGTAGCGAATGTCGAGAATCATCATCACGTATCCAGGGGCTCGTACAGGAGTGTGCGAGAGTGTGTTTTTTTAAATCGTTCTACAATACATCA ] [+] EMBL BM654754 [ ccgTAGGAGCGAGGCAAAAACATCCGTGGAACGAGCTCCTTCGAGAAAAAGGGAACAAGAACCCAACTGGAAGGGACACTTCGTTCTCCACGATAGACTGTGTGTGTGTGTGCGAGTATGTGCTTGTATGATTGTATGTGGATTGAGTGTGGCACAAAAAAAATGTGAGGAAAAACGAAACCGAACCGAACCACATTGTGCATTGGAAAGGGAGAGGGGAGAATGAACGGTCAAAGGGTCCAGAACTGGCAGCGAAAGGAAACAGAAAAGAGGATAGGAAGGATAGAGTCGATAAAAGGGGCATGATGGTGAAGCATGGGGGTATTACTACACTACTAACACATTGCTGCAGCCACACTTGGAGCTGGTTACGCTGGAGAGAGGACAAGAACAACAACAACAAAAACTATCAAGATCTTGTTTTCGTTTTTACATTAAACTATTCTTTTCTCGGCCCATGAGTCATAACATCTTGCACTTGTCTCCGGCGAACCAGTTCTCTCCTCGGTGCTAGAGAGTTCTGGTAGCGAATGTCGAGAATCATCATCACGTATCCAGGGGCTCGTACAGGAGTGTGCGAGAGTGTGTTTTTTTAAATCGTTCTACAATACATCACAAACAAGAAATTAAAAAAAAAGAATGACGAAACATTGTATGTCACGTAGGCACACATGTA ] [+] EMBL BX628392 [ AGCGAGGCAAAAACATCCGTGGAACGAGCTCCTTCGAGAAAAAGGGAACAAGAACCCAACTGGAAGGGACACTTCGTTCTCCACGATAGACTGTGTGTGTGTGTGCGAGTATGTGCTTGTATGATTGTATGTGGATTGAGTGTGGCACAAAAAAAATGTGAGGAAAAACGAAACCGAACCGAACCACATTGTGCATTGGAAAGGGAGAGGGGAGAATGAACGGTCAAAGGGTCCAGAACTGGCAGCAAAAGGAAACAGAAAAGAGGATAGGAAGGATAGAGTCGATAAAAGGGGCATGATGGTGAAGCATGGGGGTATTACTACACTACTAACACATTGCTGCAGCCACACTTGGAGCTGGTTACGCTGGAGAGAGGACAAGAACAACAACAACAAAAACTATCAAGATCTTGTTTTCGTTTTTACATTAAACTATTCTTTTCTCGGCCCATGAGTCATAACATCTTGCACTTGTCTCCGGCGAACCAGTTCTCTCCTCGGTGCTAGAGAGTTCTGGTAGCGAATGTCGAGAATCATCATCACGTATCCAGGGGCTCGTACAGGAGTGTGCGAGAGTGTGTTTTTTTAAATCGTTCTACAATACA ] [+] EMBL BM580494 [ ccgCCAGTTCTCTCCTCGGTGCTAGAGAGTGCTGGTAGCGAATGTCGAGAATCATCATCACGTATCCAGGGGCTTGTACAGGAGTGTGCGAGAGTGTGTTTTATTAAATCGTTCTA AATACATCACAAACGAGAAATTAAAAAAAAAGAATGACGAAACA TGTATGTCACGTAGGCACACATGTATGAGCTGGTAAATACTGATGCAACACTAACGTCCGGCAGCGCCTAAATTGATCACCCCAAAATAATAGCTAGAATTAAAAGTTTACTCAGAACCTCTGTTCTTGCCACCCTTATCATTTGTTTCTCTTATCAAGAGTCTTCCAACAAACAAATTATGTATCGAATTTCGAGGACAGAGTCTCCAAAGCTCTCCGTCGGCCTACATCTTGCCAAAATTGATGAATATGAAAAGAAAGAGTAGATCTTTAACGACCAAGTCCGTCAAGTCCCATTTATTATGTTTCTTTTGTAAAGCGGTGCGGTTTTCGCTCACGCAACAATGTGAACTATCCGGCTAAAAATGGTGGTTCGCCGCCTGTCTTTGTGAGAAAACATTTTTCGCATTGTGAGTTATTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7700#0 TTTTTGTTAGATACGCTGCGAATATACGTTTTTTTTTATTATTGCATTTCTGTTATGAGT 60 consensus_7700#1 --CCGGAAAGATAGGAGCGAGGCAAAAACATCCGTGGAACGAGCTCCTTCGAGAAAAAGG 58 * ***** * * * * * * *** * ** consensus_7700#0 ATGCGTTGCGTTCCTTTGAAAAAGTGTTGAAGTCCAAAACGAAAATAAAAACAAAAATAA 120 consensus_7700#1 GAACAA-GAACCCAACTGGAAGGGACACTTCGTTCTCCACGATAGACTGTGTGTGTGTGT 117 * * * ** ** * ** * **** * * consensus_7700#0 GCTAGAACAAGTTTATATGGGTGTGTATGGAT--GCTTCGATATAAATGTGCTGTGTCCT 178 consensus_7700#1 GCGAGTATGTGCTTGTATGATTGTATGTGGATTGAGTGTGGCACAAAAAAAATGTGA--- 174 ** ** * * ** **** *** * ***** * * * *** **** consensus_7700#0 GTGCTACTGAAACTGAATGCACAACAACCTCAACTCACTAGGCAAAAAGCCGAGCTGATT 238 consensus_7700#1 GGAAAAACGAAACCGAA--CCGAACCACATTG-TGCATTGGAAAGGGAGAGGGGAGAATG 231 * * ***** *** * *** ** * ** * * * ** * * ** consensus_7700#0 TCTGACCGACTTTTGCTGCAGTTGCTACAGTTCCCCCGTTCTCTCGCTACACGTTTGCGT 298 consensus_7700#1 AACGGTCAAAGGGTCCAGAACTGGCAGCGAA-----AGGAAACAGAAAAGAGGATAGGAA 286 * * * * * * * * ** * * * * * * * * consensus_7700#0 TAGTCCTACCGAAAGCACCGCTGATTTGTTTGAACAGGTTGGCATTATTATCAAGCCACA 358 consensus_7700#1 GGATAGAGTCGATAAAAGGGGCATGATGGTGAAGCATGGGGGTATTACTACACTACT--A 344 * *** * * * ** * * ** * ** **** ** * * consensus_7700#0 ACAATCATTCAGGAAGGCACACGTTTTCTTCTTTTCAACGCTTCGTTTATATCGCCTTGC 418 consensus_7700#1 ACA--CATTGCTGCAGCCACAC------------TTGGAGCT--GGTTACGCTGGAGAGA 388 *** **** * ** ***** * *** * *** * * consensus_7700#0 CGCCCGGCCCGCTGGCCCCCTGGTTCTATCCACCCCTTCGTTCACGCACCGTGCCGGATG 478 consensus_7700#1 GGACAAGAACAACAACAACAAAAA-CTATCAAGATCTT-GTTTTCGT----TTTTACATT 442 * * * * * * ***** * *** *** ** * ** consensus_7700#0 ATGAGCATCAACATTTACTAAAAGGCTAGGCATTGCAATCGTGGTTTTGTTTACCGAGAG 538 consensus_7700#1 A-AACTATT--CTTTTCTCGGCCCATGAGTCATAACA-TCTTGCACTTGTCTCCGGCGAA 498 * * ** * *** ** *** ** ** ** **** * * * ** consensus_7700#0 AGACTCCCTCCCCCTGTTCTCCCTCTGGTGATGGTGGTGG-TGCTGGTGTGTA-CAGCAC 596 consensus_7700#1 CCAGTTCTCTCCTCGGTGCTAGAG--AGTTCTGGTAGCGAATGTCGAGAATCATCATCAC 556 * * * ** * ** ** ** **** * * ** * * ** *** consensus_7700#0 ACTTTTCCACCCCGATGTAACAAGGTGTCAAAACCGGTGCGCGCGCGAGGGGTGAAAATT 656 consensus_7700#1 GTATCCAGGGGCTCGTACAGGAGTGTGCGAGAGTGTGTTTTTTTAAATCGTTCTACAATA 616 * * * * * *** * * ** * * *** consensus_7700#0 CACAATCATCTCCAACGCGGCACCGACGGAC-ACGCAACTCCTCCCCTCTTCTAGGCCAC 715 consensus_7700#1 CATCACAAACAAGAAATTAAAAAAAAAGAATGACGAAACATTGTATGTCACGTAGGCACA 676 ** * * * ** * * * * *** *** ** ***** consensus_7700#0 CTTTTCTCCAACACCGAGTGAATTCATAACTACACTGCACACGGACATTAAGGTTAGTTA 775 consensus_7700#1 CATGTATGAGCTGGTAAATACTGATGCAACACTAACGTCCGGCAGCGCCTAAATTGATCA 736 * * * * * * *** * * * * * ** * * consensus_7700#0 GCATACAAAGGCAAGCGGGTCGACGAGAATCATCACCATCATTTTGAGTTTTAACGGGAT 835 consensus_7700#1 CCCCAAAATAATAGCTAG---AATTAAAAGTTTACTCAGAACCTCTGTTCTTGCCACCCT 793 * * ** * * * * ** * ** * * * ** * * consensus_7700#0 TTTAGTTT-TTTGTCTTGTTTTGTTGCTTTATGCTTTCTTTTTCTTTTTC---TTGGGCA 891 consensus_7700#1 TATCATTTGTTTCTCTTATCAAGAGTCTTCCAACAAACAAATTATGTATCGAATTTCGAG 853 * * *** *** **** * * *** * * ** * * ** ** * consensus_7700#0 AACGCAATGACCACCATCCCCCCATTGAAACATTCCGACACCCGGGGGATCGTCGTGTCC 951 consensus_7700#1 GACAGAGTCTCCAA-AGCTCTCCGTCGG------CCTACATCTTGCCAAAATTGATGAAT 906 ** * * *** * * * ** * * ** *** * * * * ** consensus_7700#0 AGCTACTAAAGTAAGCTACCTTTATCCAC--GGTACAC--AATCACTTTCTTAGCGCTTC 1007 consensus_7700#1 ATGAAAAGAAAGAGTAGATCTTTAACGACCAAGTCCGTCAAGTCCCATTTATTATGTTTC 966 * * ** * * ***** * ** ** * * ** * ** * * *** consensus_7700#0 CATCATCATCGTGGAAAATGGTTTTTATTTAAACGGAAAAAATAACTCACAATGCGAAAA 1067 consensus_7700#1 TTTTGTAA---AGCGGTGCGGTTTTCGCTCACGCAACAATGTGAACTATCCGGCTAAAAA 1023 * * * * ****** * * * ** **** * **** consensus_7700#0 ATGTTTTCTCCCAAAGACAGGCGGCGACCACCATTTTTAGCCGAACAGTTCATTTACCTC 1127 consensus_7700#1 TGGTGGTTCGCCGCCTGTCTTTGTGAGAAAACATTTTTCGCATTGTGAGTTATTTTTTT- 1082 ** * ** * * ******* ** * **** * consensus_7700#0 GGGCGAT 1134 consensus_7700#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||