These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1538 fasta sequence [AGGGACGGAACACGTGTAAGAGTCATACGCACAGGAAGGATGACGGTGTACATAGGATGGGAAGAGGAACGGGATGATGGATGCTATAAATGTATCATTACACGTTCTGTACATGGATCGACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCCTTTGCCAAGCCAGGGATAAGGCATAACTGCATGTGAATGGATAAACTTTAAGTATCGCTAAGTGAGAGAGTGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTCTATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCTTTTAAAACAGCCTTCACACTTCGGCGGCTGCTCGGAACTTCAAATAACGAATCGACCCCGAACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACTATGAAAGAATCTCTAGCAAAACAGTAAATCTATCACCGTATAAATGTAAAGCTCACCATTTTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGAAAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAACACACTTTGAAAGAAAAATCTCATTAGGCTTAAGTTATTTGGAGCATTTTCGAAAGCTGTATAAGATTTGCTAAAAAGGCAAAACAGACGGATCATTG-TTTTCATTGTGTTTTCATAAGGGCATAATTTTATTTGATTTTGTACATAAATTATAGTGTCTGNTTTAAAAG-AACTAAT-AAACCACTGACGAATTGTATCATTTTAAACAAAAAGTGAAACACGTTTTTCCTTTTACACTAATGTGAATGTTTGAAAAATTGACAGGAAATTGGTATAAAGAAAACAATCTCCCTTTTAACATCGTATAACTATCAATAACCCCTTTTTCCCTCTCGCTTTTGATTTCGAAGAACATTAACTAATTGATCTTCGATGATCGCAATCGTGTAGCTTCTACAGTTATTATCCATTATATCACCGACCACAGAGTAATTAGATTTTCACTAGCGTTCATTTAGGTCTTTTCGCCGACACTTGCCGATACACTTGCAAAAAATTAGTTGCAATCGATGAAGGCATAACTCGGCTCAACGCGTTGCACTGCAAACTCTCCCGGAGCTTGATCGAACGGCTGATGATCCGATGCATAGTTGCTTAGCACATCCGGCAAGGACGTGTCGCTCGATGACTCGCCCATCCCCAGCATCACATCCGACCGTGTCTCGTCCAACGTGTCACTCAGCATTGACTCCGGCTGGGTACTCGATCAAATCGTCCCAACTGTTCGTCTCTGTCTGCTCGATTACATTCAAGCTCTCTGGCAGCACGTGTCCCCTCTGCATATGCCGATTGTACCGCCCGAGTGTGCGAAACATTGCATTGCAAATTTCGCACACGTAAGGATACTCGCCCGTATGCGTCATCATGTGTTTCTGTAGCTG] [+] EMBL BX625892 [AGGGACGGAACACGTGTAAGAGTCATACGCACAGGAAGGATGACGGTGTACATAGGATGGGAAGAGGAACGGGATGATGGATGCTATAAATGTATCATTACACGTTCTGTACATGGATCGACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCCTTTGCCAAGCCAGGGATAAGGCATAACTGCATGTGAATGGATAAACTTTAAGTATCGCTAAGTGAGAGAGTGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTCTATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCTTTTAAAACAGCCTTCACACTT CGGCTGCTCGGAACTTCAAATAACGAATCGACCCCGAACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACTATGAAAGAATCTCTAGCAAAACAGTAAATCTATCACCGTATAAATGTAAAGCTCACCATTTTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGAAAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAACACACTTTGAAAGAAAAATCTCATTAGGCTTAAGTTATTTGGAGCATTTTCGAAAGCTGTATAAGATTTGCTAAAAAGGCAAAACAGACGGATCATTG TTTTCATTGTGTTTTCATAAGGGCATAATTTTATTTGATTTTGTACATAAATTATAGTGTCTGNTTTAAAAG AACTAAT AAACCACTGACGAAT ] [+] EMBL BX612331 [ AGAGTCATACGCACAGGAAGGATGACGGTGTACATAGGATGGGAAGAGGAACGGGATGATGGATGCTATAAATGTATCATTACACGCTCTGTACATGGATCGACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCCTTTGCCAAGCCAGGGATAAGGCATA ] [+] EMBL BM617441 [ ccGGATCGACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCCTTTGCCAAGCCAGGGATAAGGCATAACTGCATGTGAATGGATAAACTTTAAGTATCGCTAAGTGAGAGAGTGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTCTATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCTTTTAAAACAGCCTTCACACTTCGGCGGCTGCTCGGAACTTCAAATAACGAATCGACCCCGAACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACTATGAAAGAATCTCTAGCATAACAGTAAATCTATCACCGTATAAATGTAAAGCTCACCATTTTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGAAAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAACACACTTTGAAAG ] [+] EMBL BM594858 [ ccgGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTCTATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCTTTTAAAACAGCCTTCACACTTCGGCGGCTGCTCGGAACTTCAAATAACGAATCGACCCCGAACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACTATGAAAGAATCTCTAGCAAAACAGTAAATCTATCACCGTATAAATGTAAAGCTCACCATTTTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGAAAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAACACACTTTGAAAGAAAAATCTCATTAGGCTTAAGTTATTTGGAGCATTTTCGAAAGCTGTATAAGATTTGCTAAAAAGGCAAAACAGACGGATCATTGTTTTTCATTGTGTTTTCATA ] [+] EMBL CNS095R8 [ tATAAGGGCATAATTTTATTTGATTTTGTACATAAATTATAGTGTCTGTTTTAAAAGAAACTAATAAAACCACTGACGAAATGTATCATTTTAAACAAAAAGTGAAACACGTTTTTCCTTTTACACTAATGTGAATGTTTGAAAAATTGACAGGAAATTGGTATAAAGAAAACAATCTCCCTTTTAACATCGTATAACTATCAATAACCCCTTTTTCCCTCTCGCTTTTGATTTCGAAGAACATTAACTAATTGATCTTCGATGATCGCAATCGTGTAGCTTCTACAGTTATTATCCATTATATCACCGACCACAGAGTAATTAGATTTTCACTAGCGTTCATTTAGGTCTTTTCGCCGACACTTGCCGATACACTTGCAAAAAATTAGTTGCAATCGATGAAGGCATAACTCGGCTCAACGCGTTGCACTGCAAACTCTCCCGGAGCTTGATCGAACGGCTGATGATCCGATGCATAGTTGCTTAGCACATCCGGCAAGGACGTGTCGCTCGATGACTCGCCCATCCCCAGCATCACATCCGACCGTGTCTCGTCCAACGTGTCACTCAGCATTGACTCCGGCTGGGTACTCGATCAAATCGTCCCAACTGTTCGTCTCTGTCTGCTCGATTACATTCAAGCTCTCTGGCAGCACGTGTCCCCTCTGCATATGCCGATTGTACCGCCCGAGTGTGCGAAACATTGCATTGCAAATTTCGCACACGTAAGGATACTCGCCCGTATGCGTCATCATGTGTTTCTGTAGCTG] consensusID : consensus_7701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 999 fasta sequence [CCGCGCAACAGAGACTCTACGTTTTCCAAAGACTTCTGTTCCAACCGTGTTCCTGCTCATGTCTCCCTCGTACAACCCACCAATAGCGTTTGTGGCGGCGGCTAAACCCATGAAGACCACCTGCCATTTGAGGTCCAAATCGGTGTCGGATGCGGATGCCCCTGCGCTTCGTACAGTGCGAACTAGTCAAACCAGATCATTGTCGGAGGATTTCGTTTTACAATTTTAACAAATTGTGTTTTTGTTCAGTTTTTAAACATTATTTTGTACACAGGCTAGGTTGTCGACCGGTGTCAGATTACTCTTACACGGTTGGCTAGCGTTCGATAAGTTTTAGATAAGTCCGATTTTAAGCTTTGGGGCTAAAGAAGAGATTGGAGAAGCATTTATAAAAAAAAATCTTCCCTTCGTACTCGCTCGATCAATGACACTGACTCGAGGACAGGATTGTGTGCGGCAGTATTCTCGCAGGACTCATGCAAATCATGAGATGAGTTGTAGATAAATCAATACAGTGGCATTAGCAGATCTTTACTAGCCGTACGTATATGCGTGTAAGATTGTCAAGGATCGAAAACAGAACAAAGACGATGGTGGCGTGTTAGCGAATCCAAACACAGGGCCAGACACGGTAGAATACGGTAACGGAGAAGGGGGTACGCATTTGTTGGGTTATGACCAACGTCCTAGAGTAGTAAAATTGTGCTTGGCCCCAAACTTTGGCCCACACCTTTACGCCAAAGTGATCTATTGTAGACTATTTGGAGAGGCATTAAATGAGAAAAGAAATCTTAAGTCTGATGTGTGATGTGCTGTGCTGAGAGGGTCGAGACCCCGGTAGAGGCAGCA-GAATTCAACTGGCCAGTACTACTGCTACACCTACTGTGTGCGATA-GAGTGTGTGAGTTT-GCTTTTAATGCGATGTTGTTCTTTCTATAGGTTTGCAATGTAGAGATTACTGTATAAGGGACCGGAACACGTGTAAGAGTCATACNCACAG] [+] EMBL BM636182 [CCGCGCAACAGAGACTCTACGTTTTCCAAAGACTTCTGTTCCAACCGTGTTCCTGCTCATGTCTCCCTCGTACAACCCACCAATAGCGTTTGTGGCGGCGGCTAAACCCATGAAGACCACCTGCCATTTGAGGTCCAAATCGGTGTCGGATGCGGATGCCCCTGCGCTTCGTACAGTGCGAACTAGTCAAACCAGATCATTGTCGGAGGATTTCGTTTTACAATTTTAACAAATTGTGTTTTTGTTCAGTTTTTAAACATTATTTTGTACACAGGCTAGGTTGTCGACCGGTGTCAGATTACTCTTACACGGTTGGCTAGCGTTCGATAAGTTTTAGATAAGTCCGATTTTAAGCTTTGGGGCTAAAGAAGAGATTGGAGAAGCATTTATAAAAAAAAATCTTCCCTTCGTACTCGCTCGATCAATGACACTGACTCGAGGACAGGATTGTGTGCGGCAGTATTCTCGCAGGACTCATGCAAATCATGAGATGAGTTGTAGATAAATCAATACAGTGGCATTAGCAGATCTTTACTAGCCGTACGTATATGCGTGTAAGATTGTCAAGGATCGAAAACAGAACAAAGACGATGGTGGCGTGTTAGCGAATCCAAACACAGGGCCAGACACGGTAGAATACGGTAACGGAGAAGGGGGTACGCAT ] [+] EMBL BX622304 [ GGGGCTAAAGAAGAGATTGGAGAATCATTTATAAAAAAAAATCTTCCCTTCGTACTCGCTCGATCAATGACACTGACTCGAGGACAGGATTGTGTGCGGCAGTATTCTCGCAGGACTCATGCAAATCATGAGATGAGTTGTAGATAAATCAATACAGTGGCATTAGCAGATCTTTACTAGCCGTACGTATATGCGTGTAACATTGTCAAGGATCGAAAACAGAACAAAGACGATGGTGGCGTGTTAGCGAATCCAAACACAGGGCCAGACACGGTAGAATACGGTAACGGAGAAGGGGGTACGCATTTGTTGGGTTATGACCAACGTCCTAGAGTAGTAAAATTGTGCTTGGCCCCAAACTTTGGCCCACACCTTTACGCCAAAGTGATCTATTGTAGACTATTTGGAGAGGCATTAAATGAGAAAAGAAATCTTAAGTCTGATGTGTGATGTGCTGTGCTGAGAGGGTCGAGACCCCGGTAGAGGCAGCA GAATTCAACTGGCCAGTACTACTGCTACACCTACTGTGTGCGATA GAGTGTGTGAGTTT GCTTTTAATGCGATGTTGTTCTTTCTATAGGTTTGCAATGTAGAGATTACTGTATAAGGGACCGGAACACGTGTAAGAGTCATACNCACAG] [+] EMBL BX628731 [ GTGATGTGCTGTGCTGAGAGGGTCGAGACCCCGGTAGAGGCAGCATCAATTCAACTGGCCAGNACTACTGCTACACCTACTGTGTGCGATATGAGNGTGTGAGTTTCGCTTTTAATGCNATGTTGTTCTTTCTATAGGTTTGCAATGTAGAGATTACTGTATAAGGGA CGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7701#0 AGGGACGGAACACGTGTAAGAGTCATACGCACAGGAAGGATGACGGTGTACATAGGATGG 60 consensus_7701#1 ------------------------------------------------------------ consensus_7701#0 GAAGAGGAACGGGATGATGGATGCTATAAATGTATCATTACACGTTCTGTACATGGATCG 120 consensus_7701#1 ------------------------------------------------------------ consensus_7701#0 ACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCC 180 consensus_7701#1 ------------------------------------------------------------ consensus_7701#0 TTTGCCAAGCCAGGGATAAGGCATAACTGCATGTGAATGGATAAACTTTAAGTATCGCTA 240 consensus_7701#1 ------------------------------------------------------------ consensus_7701#0 AGTGAGAGAGTGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTC 300 consensus_7701#1 ------------------------------------------------------------ consensus_7701#0 TATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCT 360 consensus_7701#1 ------------------------------------------------------------ consensus_7701#0 TTTAAAACAGCCTTCACACTTCGGCGGCTGCTCGGAACTTCAAATAACGAATCGACCCCG 420 consensus_7701#1 ------------------------------------------------------------ consensus_7701#0 AACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACT 480 consensus_7701#1 -------------------------------------CCGCGCAACAGAGACTCTACGTT 23 ** * * * * ** * consensus_7701#0 ATGAAAGAATCTCTAGCAAAACAGTAAATCTATCACCGTATAAAT-GTAAAGCTCACCAT 539 consensus_7701#1 TTCCAAAGACTTCTGTTCCAACCGTGTTCCTGCTCATGTCTCCCTCGTACAACCCACCAA 83 * ** * *** *** ** ** ** * * *** * * ***** consensus_7701#0 T--TTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGA 597 consensus_7701#1 TAGCGTTTGTGGCGGCGGCTAAACCCATGA----AGACCACCTGCCATTTGAGGTCCAAA 139 * *** * * ** ** ** ** * * ** * * * consensus_7701#0 AAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAA 657 consensus_7701#1 TCGGTGTCG-GATGCGGATGCCCCTGCGCTTCGTACAGTGCGAACTAGTCAAACCAG-AT 197 * *** * ** * ** * * ** * * **** * * consensus_7701#0 CACACTTTGAAAGAAAAATCTCATTAGGCTTAAGTTATTTGGAGCATTTTCGAAAGCTGT 717 consensus_7701#1 CATTGTCGGAGGATTTCGTTTTAC-AATTTTAACAAATTGTGTTTTTGTTCAGTTTTTAA 256 ** * ** * * * * **** *** * * *** * consensus_7701#0 ATAAGATTTGCTAAAAAGGCAAAACAGACGGATCATTGTTTTCATTGTGTTTTCATAAGG 777 consensus_7701#1 ACATTATTTTGTACACAGGCTAGGTTGTCG-ACCGGTGTCAG-ATTACTCTTACACGGTT 314 * * **** ** * **** * * ** * * *** *** ** ** consensus_7701#0 GCATAATTTTATTTGATTTTGTACATAAATTATAGTGTCTGNTTTAAAAGAACTAATAAA 837 consensus_7701#1 GGCTAGCGTTCGATAAGTTT-TAGATAAGTCCGATTTTAAGCTTTGGGGCTA--AAGAAG 371 * ** ** * * *** ** **** * * * * * *** * ** ** consensus_7701#0 CCACTGACGAATTGTATCATTTTAAACAAAAAGTGAAACACGTTTTTCCTTTTACACTAA 897 consensus_7701#1 AGATTGGAGAAGCAT----TTATAAAAAAAAA-----------TCTTCCCTTCGTACTCG 416 * ** *** * ** **** ***** * **** ** *** consensus_7701#0 TGTGAATGTTTGAAAAATTGACAGGAAATTGGTATAAAGAA-AACAATCTCCCTTTTAAC 956 consensus_7701#1 CTCGATCAAT---GACACTGACTCGAGGACAGGATTGTGTGCGGCAGTATTCTCGCAGGA 473 ** * * * **** ** * ** * ** * * * consensus_7701#0 ATCGTATAACTATCAATAACCCCTTTTTCCCTCTCGCTTTTGATTTCGAAGAACATTAAC 1016 consensus_7701#1 CTCATGCAA--ATCATGAGATGAGTT---------GTAGATAAATCAATACAGTGGCA-T 521 ** * ** **** * ** * * * * * * * consensus_7701#0 TAATTGATCTTCGATGATCGCAATCGTGTAGCTTCTACAGTTATTATCCATTATATCACC 1076 consensus_7701#1 TAGCAGATCTTTACTAGCCGTACGTATAT-GCGTGTAAGATTGTCAAGGATCGAAA-ACA 579 ** ****** * ** * * * ** * ** ** * * ** * ** consensus_7701#0 GACCACAGAGTAATTAGATTTTCACTAGCGTTCATTTAGGTCTTTTCGCCGACACTTGCC 1136 consensus_7701#1 GA--ACAAAGACGATGGTGGCGTGTTAGCG--AATCCAAACACAGGGCCAGACACGGTAG 635 ** *** ** * * ***** ** * * ***** consensus_7701#0 GATACACTTGCAAAAAATTAGTTGCA-ATCGATGAAGGCATAACTCGGCTCAACGCGTTG 1195 consensus_7701#1 AATACGGTAACGGAGAAGGGGGTACGCATTTGTTGGGTTATGACCAACGTCCTAGAGTAG 695 **** * * * ** * * * ** * * ** ** ** * ** * consensus_7701#0 CACTGCAAACTCTCCCGGAGCTTGATCGAACGGCTGATGATCCGATGC-ATAGTTGCTTA 1254 consensus_7701#1 TA----AAATTGTGCTTGGCCCCAAACTT-TGGCCCACACCTTTACGCCAAAGTGATCTA 750 * *** * * * * * * * *** * * ** * *** ** consensus_7701#0 GCACATCCGGCAAGGACGTGTCGCTCGATGACTCGCCCA-TCCCCAGCATCACATCCGAC 1313 consensus_7701#1 TTGTAGACTATTTGGA-GAGGCATTAAATGAGAAAAGAAATCTTAAGTCTGATGTGTGAT 809 * * *** * * * * **** * ** ** * * * ** consensus_7701#0 CGTGTCTCGTCCAACGTGTCACTCAGCATTGACTCCGGCTGGGTACTCGATCAAATCGTC 1373 consensus_7701#1 -GTGCTGTGCTGAGAGGGTCG--AGACCCCGGTAGAGGCAGCAGAATTCAACTGGCCAGT 866 *** * * * *** * * *** * * * * * * consensus_7701#0 CCAACTGTT-CGTCT-CTGTCTGCTCGATTACATTCAAGCTCTCTGGCAGCACGTGTCCC 1431 consensus_7701#1 ACTACTGCTACACCTACTGTGTGCGATAGAGTGTGTGAGTTTGCTTTTAATGCGATGTTG 926 * **** * * ** **** *** * * ** * ** * ** consensus_7701#0 CTCTGCATATGCCGATTGTACCGCCCGAGTGTGCGAAACATTGCATTGCAAATTTCGCAC 1491 consensus_7701#1 TTCTTTCTATAG-GTTTGCAATGTA-GAGATTACTGTATAAGGGACCGGAA------CAC 978 *** *** * *** * * *** * * * * * * * ** *** consensus_7701#0 ACGTAAGGATACTCGCCCGTATGCGTCATCATGTGTTTCTGTAGCTG 1538 consensus_7701#1 GTGTAAGAGT-CATACNCACAG------------------------- 999 ***** * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||