|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1157 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTAATCATCATCAATAGCCACACATTTCTCGTGCGATTTTATTTAAACTAGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTATACGATGTTTATACCATTTCAATTTTTGAAAGACCTGCGTATAGTAAACGTTTCTTTAGAGAAATCATCACACATAAAGGGCAAATTGAAAGAGAAAGAAGAAAAGCGCAGAGGCAGTAAGAGAAGAAGAAAGCAGAAAGTTAGAGATAATTGTGTAAATGTGTCTGGTCAGTGCTTACGAACAAAATTAAAAGGTTGCTTTAAAGCCTTACATGGTTACACGATTAATCAATGCGAAAATGGAAACTTAACGGTCTGACAAAGAAAAAGAATGACGGCCTGAAGGAAAAGTAGATACACACATGTAAACAATAAAATCGACAACTACTGTTTGATACTACGATATGT-AAACTAATTTCTTGCTAACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAAATATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGAT-TTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACCTGCAACGACATTAGGCTAGTTAGTGTCGACACTTGAGTTAGCCTAGCGTAACTCACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTATCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTATCATCCCAAAACCTCGGGGA]
[+] EMBL AGA284556 [TTTTTTTTTTTTTTTTTTTTTTAATCATCATCAATAGCCACACATTTCTCGTGCGATTTTATTTAAACTAGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTATACGATGTTTATACCATTTCAATTTTTGAAAGACCTGCGTATAGTAAACGTTTCTTTAGAGAAATCATCACACATAAAGGGCAAATTGAAAGAGAAAGAAGAAAAGCGCAGAGGCAGTAAGAGAAGAAGAAAGCAGAAAGTTAGAGATAATTGTGTAAATGTGTCTGGTCAGTGCTTACGAACAAAATTAAAAGGTTGCTTTAAAGCCTTACATGGTTACACGATTAATCAATGCGAAAATGGAAACTTAACGGTCTGACAAAGAAAAAGAATGACGGCCTGAAGGAAAAGTAGATACACACATGTAAACAATAAAATCGACAACTACTGTTTGATACTACGATATGT AAACTAATTTCTTGCTAACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAAATATCGT ]
[-] EMBL BX627925 [ TACTACGATATGTAAAACTAATTTCTTGCTAACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCTTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGAT TTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACCTGCAACGACATTAGGCTAGTTAGTGTCGACACTTGAGTTAGCCTAGCGTAACTCACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTATCAGGTTTGAAAATGTATTT ]
[-] EMBL BX612225 [ TTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGA ]
[-] EMBL AL695157 [ CTGCTTGAGTAAGATNTTC ACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACCTGCAACGACATTAGGCTAGTTAGTGTCGACACTTGAGTTAGCCTAGCGTAACTCACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTAC GCGGTAATGTGGTATCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTATCATCCCAAAACCTCGGGGA]
consensusID : consensus_7717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1004 fasta sequence
[AGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTAAAAAATGTTTATACCATTTCAATTTTTGAAAGACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTA-TCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAATTTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACAGCGACGTGGGGCCCACGTCTTTGTCTGAGCGTAAATCGGACGATCTGGCGC-TTTGCAAAAATGAAACACATTGTAACTCCTAAAACGCCACCACCTATAATCAACACGATCATAACTCCCGACAACTCCTCGCATTTCGTTTTGTATATTTTGCGACGCTTGGCTTGAATTCTAGAGCATAATGCACAACGCAACTTATTTCAC-GCGCCGATGAATATTCGATCCA]
[-] EMBL CNS0938B [AGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTAAAAAATGTTTATACCATTTCAATTTTTGAAAGACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTA TCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAATTTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACAGCGACGTGGGGCCCACGTCTTTGTCTGAGCGTAAATCGGACGATCTGGCGCTTTTGCAAAAATGAAACACATTGTAACTCCTAAAACGCCACCACCTATAATCAACACGATCATAACTCCCGACAACTCCTCGCATTTCGTTTTGTATATTTTGCGACGCTTGGCTTGAATTCTAGAGCATAATGCACAACGCAACTTATTTCAC GCGCCGATGAATATTCGATCCA]
[+] EMBL CNS0938C [ atacgATGTTTATACCATTTCAATTTTTGAAAGACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTAATAGGTTCATGCGGGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTTCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTTTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAAATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACCCCCCCCCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTTTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGGGGTAATGTGGTA TCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAATTTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACAGCGACGTGGGGCCCACGTCTTTGTCTGAGCGTAAATCGGACGATCTGGCGC TTTGCAAA ]
[-] EMBL BM591011 [ CACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTACGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTA TCAGGTTTCAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAATTTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACGGCGACGTGGGGCCCACGTCTTTGTCTGAGCGTAAATCGGACGATCTGGCGC TTTGCAAAAATGAAACACATTGTAACTCCTAAAACGCCACCACCTATAATCAACACGATCATAACTCCCGACAACTCCTC CATTTCGTTTTGTATATTTTGCGACGCTTGGCTTGAATTCTAGAGCATAATGCACAATGCAACTTATTTCACTGCGCCGg ]
[-] EMBL AGA285914 [ GGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATCTCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTATTCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7717#0 TTTTTTTTTTTTTTTTTTTTTTAATCATCATCAATAGCCACACATTTCTCGTGCGATTTT 60
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 ATTTAAACTAGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTATA 120
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 CGATGTTTATACCATTTCAATTTTTGAAAGACCTGCGTATAGTAAACGTTTCTTTAGAGA 180
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 AATCATCACACATAAAGGGCAAATTGAAAGAGAAAGAAGAAAAGCGCAGAGGCAGTAAGA 240
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 GAAGAAGAAAGCAGAAAGTTAGAGATAATTGTGTAAATGTGTCTGGTCAGTGCTTACGAA 300
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 CAAAATTAAAAGGTTGCTTTAAAGCCTTACATGGTTACACGATTAATCAATGCGAAAATG 360
consensus_7717#1 ------------------------------------------------------------
consensus_7717#0 GAAACTTAACGGTCTGACAAAGAAAAAGAATGACGGCCTGAAGGAAAAGTAGATACACAC 420
consensus_7717#1 -----------------------------------------AGCTTTGGAGAGCCCATCT 19
** * **
consensus_7717#0 ATGTAAACAATAAAATCGACAACTACTGTTTGATACTACGATATGTAAACTAATTTCTTG 480
consensus_7717#1 CCTTGTACTTTCTTGTCGAGCACAAGACTAAAAAATGTTTATAC-CATTTCAATTTTTGA 78
* ** * **** ** * * * * *** * ***** *
consensus_7717#0 CTAACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGG 540
consensus_7717#1 AAGACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGG 138
*********************************************************
consensus_7717#0 CTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCG 600
consensus_7717#1 CTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCG 198
************************************************************
consensus_7717#0 GGTGTTTGAAAATATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACG 660
consensus_7717#1 GGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACG 258
*********** ************************************************
consensus_7717#0 TAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATT 720
consensus_7717#1 TAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATT 318
************************************************************
consensus_7717#0 TGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTT 780
consensus_7717#1 TGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTT 378
************************************************************
consensus_7717#0 CTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCG 840
consensus_7717#1 CTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCG 438
************************************************************
consensus_7717#0 AGCATGGTCATACCTGCAACGACATTAGGCTAGTTAGTGTCGACACTTGAGTTAGCCTAG 900
consensus_7717#1 AGCATGGTCATAC----------------------------------------------- 451
*************
consensus_7717#0 CGTAACTCACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGC 960
consensus_7717#1 ----------ATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGC 501
**************************************************
consensus_7717#0 CGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTC 1020
consensus_7717#1 CGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTC 561
************************************************************
consensus_7717#0 CTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTA 1080
consensus_7717#1 CTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTA 621
************************************************************
consensus_7717#0 GTACGGCGGTAATGTGGTATCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCT-ATC 1139
consensus_7717#1 GTACGGCGGTAATGTGGTATCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATC 681
******************************************************** ***
consensus_7717#0 ATCCCAAA--ACCTCGGGGA---------------------------------------- 1157
consensus_7717#1 ATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAAT 741
******** * * **
consensus_7717#0 ------------------------------------------------------------
consensus_7717#1 TTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACAGCGACGTGGGGCCCACGTCTTTG 801
consensus_7717#0 ------------------------------------------------------------
consensus_7717#1 TCTGAGCGTAAATCGGACGATCTGGCGCTTTGCAAAAATGAAACACATTGTAACTCCTAA 861
consensus_7717#0 ------------------------------------------------------------
consensus_7717#1 AACGCCACCACCTATAATCAACACGATCATAACTCCCGACAACTCCTCGCATTTCGTTTT 921
consensus_7717#0 ------------------------------------------------------------
consensus_7717#1 GTATATTTTGCGACGCTTGGCTTGAATTCTAGAGCATAATGCACAACGCAACTTATTTCA 981
consensus_7717#0 -----------------------
consensus_7717#1 CGCGCCGATGAATATTCGATCCA 1004
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||