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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTCGAACCTGGTGTTCGTGGGCATCAGCGAGCTGGCGGACGTGAAGTGCTCGGGCAACTGGATGTGGGCGGCCAAGGTGGCTGGCGAAGGGGCCAAGCTGGTCGATGCGTGCGAGGCGATGTGCGAGCTGATGGGCCAGCTGTCGATCGCGATCGACGGCGGCAAGGATTCGCTCTCGATGGCGGCCCGCGTCAACGGCGAAACGGTCGTCAGCCCGGGCACGCTCGTGGTGTCGACGTACGCGCCCTGCCCGGATGTGACGGTGAAGGTGACGCCCGACCTGAAGGCGGCTGCCCTAGGCACCGACACGGCCCTGCTGTACGTTGCGATCGAGGGGCAGCGCTTCCGGCTCGGCGGCTCCGTGCTGGCCCAGTGCTACGGCCGGCTCGGCGGCGACTGTCCGGATGTGGGCAACGCGCAGTGCTTGAAGAGCGCGTTCAACGTCACGCAGCAGCTGCTGCGGCAGGGCATGCTGCTGTCCGGGCACGACTGCAGCGATGGTGGCCTCATTACGACGGTGCTCGAGATGGCGTTTGCTGGGCTGACGGCGGTCGAGATCAATCTGGAGCAGCTGCTGGCATCGAGCGGCGGTGCCTGCAGCCAGGAGGAAGCGGCCATCCGTGCCCTGTTCGCGGAAGAATGCGGCTGGGTGCTGGAAAGTGCAACGAGGCGAACGTGGGCTGCCGTGACGGACGCATTCCGCAAGGCTGCCGTGCCGTGGCTTCACCGTTCGGTCCCCGGTGTGGGCCGTGGCCGATCTGCATTCGCGAAAGTC]
[+] EMBL BM618097 [CCGCCCACGCGTCCGCCCACGCGTCCGCTCGAACCTGGTGTTCGTGGGCATCAGCGAGCTGGCGGACGTGAAGTGCTCGGGCAACTGGATGTGGGCGGCCAAGGTGGCTGGCGAAGGGGCCAAGCTGGTCGATGCGTGCGAGGCGATGTGCGAGCTGATGGGCCAGCTGTCGATCGCGATCGACGGCGGCAAGGATTCGCTCTCGATGGCGGCCCGCGTCAACGGCGAAACGGTCGTCAGCCCGGGCACGCTCGTGGTGTCGACGTACGCGCCCTGCCCGGATGTGACGGTGAAGGTGACGCCCGACCTGAAGGCGGCTGCCCTAGGCACCGACACGGCCCTGCTGTACGTTGCGATCGAGGGGCAGCGCTTCCGGCTCGGCGGCTCCGTGCTGGCCCAGTGCTACGGCCGGCTCGGCGGCGACTGTCCGGATGTGGGCAACGCGCAGTGCTTGAAGAGCGCGTTCAACGTCACGCAGCAGCTGCTGCGGCAGGGCATGCTGCTGTCCGGGCACGACTGCAGCGATGGTGGCCTCATTACGACGGTGCTCGAGATGGCGTTTGCTGGGCTGACGGCGGTCGAGATCAATCTGGAGCAGCTGCTGGCATCGAGCGGCGGTGCCTGCAGCCAGGAGGAAGCGGCCATCCGTGCCCTGTTCGCGGAAGAATGCGGCTGGGTGCTGGAAAGTGCAACGAGGCGAACGTGGGCTGCCGTGACGGACGCATTCCGCAAGGCTGCCGTGCCGTGGCTTCACCGTTCGGTCCCCGGTGTGGGCCGTGGCCGATCTGCATTCGCGAAAGTC]
consensusID : consensus_773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[CCTCATTACGACGGTGCTCGAGATGGCGTTTGCCGGGCTGACGGCGGTCGAGATCAATCTGGAGCAGCTGCTGGCATCGAGCGGCGGTGCCTGCAGCCAGGAGGAAGCGGCCATCCGTGCCCTGTTCGCGGAGGAGTGCGGCTGGGTGCTGGAGGTGCAGCAGGCGAACGTGGCCGCCGTCACGGACGCATTCCGCAAGGCTGCCGTGCCGTGCTTCACCGTCGGTCGCGGTGTGGCCGTGGCCGATCTGCATTACAGTCCGTGTCGGTGCGGGCCGGCGCAAAGGTGGTGCTGCTGCAGGACAGCCTGTTCAATCTGTTCAATCGCTGGGAATCGACCAGCTTCGAGATTGAAAAGCTGCAGAAGGCAAAGGCAAGTGC]
[+] EMBL BX607838 [CCTCATTACGACGGTGCTCGAGATGGCGTTTGCCGGGCTGACGGCGGTCGAGATCAATCTGGAGCAGCTGCTGGCATCGAGCGGCGGTGCCTGCAGCCAGGAGGAAGCGGCCATCCGTGCCCTGTTCGCGGAGGAGTGCGGCTGGGTGCTGGAGGTGCAGCAGGCGAACGTGGCCGCCGTCACGGACGCATTCCGCAAGGCTGCCGTGCCGTGCTTCACCGTCGGTCGCGGTGTGGCCGTGGCCGATCTGCATTACAGTCCGTGTCGGTGCGGGCCGGCGCAAAGGTGGTGCTGCTGCAGGACAGCCTGTTCAATCTGTTCAATCGCTGGGAATCGACCAGCTTCGAGATTGAAAAGCTGCAGAAGGCAAAGGCAAGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_773#0 CCGCCCACGCGTCCGCCCACGCGTCCGCTCGAACCTGGTGTTCGTGGGCATCAGCGAGCT 60
consensus_773#1 ------------------------------------------------------------
consensus_773#0 GGCGGACGTGAAGTGCTCGGGCAACTGGATGTGGGCGGCCAAGGTGGCTGGCGAAGGGGC 120
consensus_773#1 ------------------------------------------------------------
consensus_773#0 CAAGCTGGTCGATGCGTGCGAGGCGATGTGCGAGCTGATGGGCCAGCTGTCGATCGCGAT 180
consensus_773#1 ------------------------------------------------------------
consensus_773#0 CGACGGCGGCAAGGATTCGCTCTCGATGGCGGCCCGCGTCAACGGCGAAACGGTCGTCAG 240
consensus_773#1 ------------------------------------------------------------
consensus_773#0 CCCGGGCACGCTCGTGGTGTCGACGTACGCGCCCTGCCCGGATGTGACGGTGAAGGTGAC 300
consensus_773#1 ------------------------------------------------------------
consensus_773#0 GCCCGACCTGAAGGCGGCTGCCCTAGGCACCGACACGGCCCTGCTGTACGTTGCGATCGA 360
consensus_773#1 ------------------------------------------------------------
consensus_773#0 GGGGCAGCGCTTCCGGCTCGGCGGCTCCGTGCTGGCCCAGTGCTACGGCCGGCTCGGCGG 420
consensus_773#1 ------------------------------------------------------------
consensus_773#0 CGACTGTCCGGATGTGGGCAACGCGCAGTGCTTGAAGAGCGCGTTCAACGTCACGCAGCA 480
consensus_773#1 ------------------------------------------------------------
consensus_773#0 GCTGCTGCGGCAGGGCATGCTGCTGTCCGGGCACGACTGCAGCGATGGTGGCCTCATTAC 540
consensus_773#1 ---------------------------------------------------CCTCATTAC 9
*********
consensus_773#0 GACGGTGCTCGAGATGGCGTTTGCTGGGCTGACGGCGGTCGAGATCAATCTGGAGCAGCT 600
consensus_773#1 GACGGTGCTCGAGATGGCGTTTGCCGGGCTGACGGCGGTCGAGATCAATCTGGAGCAGCT 69
************************ ***********************************
consensus_773#0 GCTGGCATCGAGCGGCGGTGCCTGCAGCCAGGAGGAAGCGGCCATCCGTGCCCTGTTCGC 660
consensus_773#1 GCTGGCATCGAGCGGCGGTGCCTGCAGCCAGGAGGAAGCGGCCATCCGTGCCCTGTTCGC 129
************************************************************
consensus_773#0 GGAAGAATGCGGCTGGGTGCTGGAAAGTGCAACGAGGCGAACGTGGGCTGCCGTGACGGA 720
consensus_773#1 GGAGGAGTGCGGCTGGGTGCTGGAG-GTGCAGC-AGGCGAACGTGG-CCGCCGTCACGGA 186
*** ** ***************** ***** * ************ * ***** *****
consensus_773#0 CGCATTCCGCAAGGCTGCCGTGCCGTGGCTTCACCGTTCGGTCCCCGGTGTGGGCCGTGG 780
consensus_773#1 CGCATTCCGCAAGGCTGCCGTGCCGTG-CTTCACCGT-CGGTCGC-GGTGTGG-CCGTGG 242
*************************** ********* ***** * ******* ******
consensus_773#0 CCGATCTGCATTCGCGAAAGTC-------------------------------------- 802
consensus_773#1 CCGATCTGCATTACAGTCCGTGTCGGTGCGGGCCGGCGCAAAGGTGGTGCTGCTGCAGGA 302
************ * **
consensus_773#0 ------------------------------------------------------------
consensus_773#1 CAGCCTGTTCAATCTGTTCAATCGCTGGGAATCGACCAGCTTCGAGATTGAAAAGCTGCA 362
consensus_773#0 ------------------
consensus_773#1 GAAGGCAAAGGCAAGTGC 380
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||