These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1411 fasta sequence [CGCTATTACACTATCACTATTGAAAGCATCTATTCCAATCTTTACCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCGCTTTATCTCTTTCTCCTCGCCACAATTTCTCTTTCATGCTCTGACCTGTGTGTGTGATAAATCGTTTATTATGACTCGCACACATGTACTAAATGCAATCGCTTCGCCACATTCTTAGAGCATGGAACGATTACAGTACATTGGCTTCACGGCCAACACGGGCAGCGGCGTTTCTCCAAGCGAGGTTTGCAATCAAGATTTTATTTACCCTTACCCACACACCCCCCTCCCCTCCTCCTGGTTCTCTCCTCAACGTAAAACAAAACACAAAAACAAAATCAACATAAAAGAGATTTCAGAAATGACGAGTTGTAATGTACCGTGGATCGCAAATGTGTATCAAACATCCCGCACCGATTATGAGAGTAATGACCGATACGATACTACTACTACTACACACCGCTATATAGATAGACATAATGGGGGGCACACACACCGTGGGAACAGAAATGGCAACCGAAAATGCGGTGATGAGAGAGTACGAAATGGCAAACATTTAAAAAAAAAAACAAACGATCCCCTAAACACACACACAAAACCACACGACAACAGAGTACGTGTTTATTATAGTAAAAGTTGTGTTTCTTACGTCTTTTCTGTGTAGCGTTTAAGCGTTAAGTGGGGAAAATTAAGCAAACAAACCCGGTATAAACGGTGTAAGATAAGTAAGATAATTTAAAACCTGTAGCTTTTCGAAAGCTGTACTGAACGATGGGATTGAAAGCGAAGGAATGAAAAGAGAGAGAAGAGAGAGAGAGAGCGAAAGGAGAAAGGAGAAGAAATGGAAAAGATTGCACGATCGATGTCGTGTGTTGCCAATCATGGTTTCCTTTCCACTTTCTGTTTTGACTATTTTAGTGAATACGTTTTTTTTAATTTCATTTTTTTCTACTTATTTCTACGATCATACAAACATATACAAGTCTGTCTCGCCCTCCGAAACACACCTACATAAACACGGTGAAAATAAAAAGAAGAAGAAAAAACACACACACACACCTCCAACTGTGTGTACACGCAGACAAAACATATCCCAAACATCAAGCCTAGTTCTCGATAGGGAAGAGTAGGCACTGAAAGGCTCTAAAAGCAGCACATACAAGAAGGAAGAACAAACCGAAAACGAGAGCAGAAATACGTGTACGTGTGTGAGTATGTGTACGTGTCGGTGTGGGCGAGCGATTGACTGTGGTAAAGCCCAGCGCGTATTACAACAGGGTGCGAACAGCCGAACAACTATGTTCCATTTAATTTACCTGTACTTTTTTTTAAATATTACAAACTGTCGTCTCCCCTTTTTACTATATGCTTTAAGTTTAAAACAATCTATATCT] [+] EMBL BX622197 [CGCTATTACACTATCACTATTGAAAGCATCTATTCCAATCTTTACCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCGCTTTATCTCTTTCTCCTCGCCACAATTTCTCTTTCATGCTCTGACCTGTGTGTGTGATAAATCGTTTATTATGACTCGCACACATGTACTAAATGCAATCGCTTCGCCACATTCTTAGAGCATGGAACGATTACAGTACATTGGCTTCACGGCCAACACGGGCAGCGGCGTTTCTCCAAGCGAGGTTTGCAATCAAGATTTTATTTACCCTTACCCACACACCCCCCTCCCCTCCTCCTGGTTCTCTCCTCAACGTAAAACAAAACACAAAAACAAAATCAACATAAAAGAGATTTCAGAAATGACGAGTTGTAATGTACCGTGGATCGCAAATGTGTATCAAACATCCCGCACCGATTATGAGAGTAATGACCGATACGATACTACTACTACTACACACCGCTATATAGATAGACATAATGGGGGGCACACACACCGTGGGAACAGAAATGGCAACCGAAAATGCGGTGATGAGAGAGTACGAAATGGCAAACATTTAAAAAAAAAAACAAACGATCCCCTAAACACACACACAAAACCACACGACAACAGAGTACGTGTTTATTATAGTAAAAGTTGTGTTTCTTACGTCTTTTCTGNGTAGCGTTTAAGCGTTAAGTGGGG AAATTAAGCAAACAAACCCGGTA ] [+] EMBL BX610611 [ CACACACACAAAACCACACGACAACAGAGTACGTGTTTATTATAGTAAAAGTTGTGTTTCTTACGTCTTTTCTGTGTAGCGTTTAAGCGTTAAGTGGGGAAAATTAAGCAAACAAACCCGGTATAAACGGTGTAAGATAAGTAAGATAATTTAAAACCTGTAGCTTTTCGAAAGCTGTACTGAACGATGGGATTGAAAGCGAAGGAATGAAAAGAGAGAGAAGAGAGAGAGAGAGCGAAAGGAGAAAGGAGAAGAAATGGAAAAGATTGCACGATCGATGTCGTGTGTTGCCAATCATGGTTTCCTTTCCACTTTCTGTTTTGACTATTTTAGTGAATACGTTTTTTTTAATTTCATTTTTTTCTACTTATTTCTACGATCATACAAACATATACAAGTCTGTCTCGCCCTCCGAAACACACCTACATAAACACGGTGAAAATAAAAAGAAGAAGAAAAAACACACACACACACCTCCAACTGTGTGTACACGCAGACAAAACATATCCCAAACATCAAGCCTAGTTCTCGATAGGGAAGAGTAGGCACTGAAAGGCTCTAAAAGCAGCACATACAAGAAGGAAGAAACAACCGAAAACGAGA ] [+] EMBL BX610612 [ AACCACACGACAACAGAGTACGTGTTTATTATAGTAAAAGTTGTGTTTCTTACGTCTTTTCTGTGTAGCGTTTAAGCGTTAAGTGGGGAAAATTAAGCAAACAAACCCGGTATAAACGGTGTAAGATAAGTAAGATAATTTAAAACCTGTAGCTTTTCGAAAGCTGTACTGAACGATGGGATTGAAAGCGAAGGAATGAAAAGAGAGAGAAGAGAGAGAGAGAGCGAAAGGAGAAAGGAGAAGAAATGGAAAAGATTGCACGATCGATGTCGTGTGTTGCCAATCATGGTTTCCTTTCCACTTTCTGTTTTGACTATTTTAGTGAATACGTTTTTTTTAATTTCATTTTTTTCTACTTATTTCTACGATCATACAAACATATACAA ] [+] EMBL BX610610 [ AACCACACGACAACAGAGTACGTGTTTATTATAGTAAAATTTGTGTTTCTTACGTCTTTTCTGTGTAGCGTTTAAGCGTTAAGTGGGGAAAATTAAGCAAACAAACCCGGTATAAACGGTGTAAGATAAGTAAGATAATTTAAAACCTGTAGCTTTTCGAAAGCTGTACTGAACGATGGGATTGAAAGCGAAGGAATGAAAAGAGAGAGAAGAGAGAGAGAGAGCGAAAGGAGAAAGGAGAAGAAATGGAAAAGATTGCACGATCGATGTCGTGTGTTGCCAATCATGGTTTCCTTTCCACTTTCTGTTTTGACTATTTTAGTGAATACGTTTTTTTTAATTTCATTTTTTTCTACTTATTTCTACGATCATACAAACATATACAAGTCTGTCTCGCCCTCCGAAACACACCTACATAAACA ] [+] EMBL BX614233 [ TAGTAAAAGTTGTGTTTCTTACGTCTTTTCTGTGTAGCGTTTAAGCGTTAAGTGGGGAAAATTAAGCAAACAAACCCGGTATAAACGGTGTAAGATAAGTAAGATAATTTAAAACCTGTAGCTTTTCGAAAGCTGTACTGAACGATGGGATTGAAAGCGAAGGAATGAAAAGAGAGAGAAGAGAGAGAGAGAGCGAAAGGAGAAAGGAGAAGAAATGGAAAAGATTGCACGATCGATGTCGTGTGTTGCCAATCATGGTTTCCTTTCCACTTTCTGTTTTGACTATTTTAGTGAATACGTTTTTTTTAATTTCATTTTTTTCTACTTATTTCTACGATCATACAAACATATACAAGTCTGTCTCGC ] [+] EMBL BX613518 [ GCAAACAAACCCGGTATAAACGGTGTAAGATAAGTAAGATAATTTAAAACCTGTAGCTTTTCGAAAGCTGTACTGAACGATGGGATTGAAAGCGAAGGAATGAAAAGAGAGAGAAGAGAGAGAGAGAGCGAAAGGAGAAAGGAGAAGAAATGGAAAAGATTGCACGATCGATGTCGTGTGTTGCCAATCATGGTTTCCTTTCCACTTTCTGTTTTGACTATTTTAGTGAATACGTTTTTTTTAATTTCATTTTTTTCTACTTATTTCTACGATCATACAAACATATACAAGTCTGTCTCGCCCTCCAAAACACACCTACATAAACACGGTGAAAATAAAAAGAAGAAGAAAAAACACACACACACACCTCCAACTGTGTGTACACGCAGACAAAACATATCCCAAACATCAAGCCTAGTTCTCGATAGGGAAGAGTAGGCACTGAAAGGCTCTAAAAGCAGCACATACAAGAAGGAAGAACAAACCGAAAACGAGAGCAGAAATACGTGTACGTGTGTGAGTATGTGTACGTGTCGGTGTGGGCGAGCGATTGACTGTGGTAAAGCCCAGCGCGTATTACAACAGGGTGCGAACAGCCGAACAACTATGTTCCATTTAATTTACCTGTACTTTTTTTTAAATATTACAAACTGTCGTCTCCCCTTTTTACTATATGCTTTAAGTTTAAAACAATCTATATCT] [+] EMBL BX614923 [ CAAACATCAAGCCTAGTTCTCGATAGGGAAGAGTAGGCACTGAAAGGGTCTAAAAGCAGCACATACAAGAAGGAAGAACAAACCGAAAACGAGAGCAGAAAAACGTGTACGTGTGTGAGTATGTGTACGTGTCGGTGTGGGCGAGCGATTGACTGTGGTAAAGCCCAGCGCGTATTACAACAGGGGGCGAACAGCCGAACAACTATGTTCCATTTAATTTACCTGTACTTTTTTTT AATATTACAAACTGTCGTCTCCCCT ] consensusID : consensus_7737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [AGAGCGAAAGGAGAAAGGAGATGAAATGGAAAAGATTGCACGATCGATGTCGGGTGTTGCCATTCATGGTTTCCTTTCCACTTTCTGTTGCGACTATTTTAGTGAGTACGTTTTTGTTATTTTCATTTTTCCCTACTTATTCCTACGATCATACAGCCATATACATGTCTGTCTCGCCCTC] [+] EMBL BX615749 [AGAGCGAAAGGAGAAAGGAGATGAAATGGAAAAGATTGCACGATCGATGTCGGGTGTTGCCATTCATGGTTTCCTTTCCACTTTCTGTTGCGACTATTTTAGTGAGTACGTTTTTGTTATTTTCATTTTTCCCTACTTATTCCTACGATCATACAGCCATATACATGTCTGTCTCGCCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7737#0 CGCTATTACACTATCACTATTGAAAGCATCTATTCCAATCTTTACCTCTCTCTTTCTCTC 60 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 TCTCTCTCTCTCTCTCGCTTTATCTCTTTCTCCTCGCCACAATTTCTCTTTCATGCTCTG 120 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 ACCTGTGTGTGTGATAAATCGTTTATTATGACTCGCACACATGTACTAAATGCAATCGCT 180 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 TCGCCACATTCTTAGAGCATGGAACGATTACAGTACATTGGCTTCACGGCCAACACGGGC 240 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 AGCGGCGTTTCTCCAAGCGAGGTTTGCAATCAAGATTTTATTTACCCTTACCCACACACC 300 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 CCCCTCCCCTCCTCCTGGTTCTCTCCTCAACGTAAAACAAAACACAAAAACAAAATCAAC 360 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 ATAAAAGAGATTTCAGAAATGACGAGTTGTAATGTACCGTGGATCGCAAATGTGTATCAA 420 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 ACATCCCGCACCGATTATGAGAGTAATGACCGATACGATACTACTACTACTACACACCGC 480 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 TATATAGATAGACATAATGGGGGGCACACACACCGTGGGAACAGAAATGGCAACCGAAAA 540 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 TGCGGTGATGAGAGAGTACGAAATGGCAAACATTTAAAAAAAAAAACAAACGATCCCCTA 600 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 AACACACACACAAAACCACACGACAACAGAGTACGTGTTTATTATAGTAAAAGTTGTGTT 660 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 TCTTACGTCTTTTCTGTGTAGCGTTTAAGCGTTAAGTGGGGAAAATTAAGCAAACAAACC 720 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 CGGTATAAACGGTGTAAGATAAGTAAGATAATTTAAAACCTGTAGCTTTTCGAAAGCTGT 780 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 ACTGAACGATGGGATTGAAAGCGAAGGAATGAAAAGAGAGAGAAGAGAGAGAGAGAGCGA 840 consensus_7737#1 -----------------------------------------------------AGAGCGA 7 ******* consensus_7737#0 AAGGAGAAAGGAGAAGAAATGGAAAAGATTGCACGATCGATGTCGTGTGTTGCCAATCAT 900 consensus_7737#1 AAGGAGAAAGGAGATGAAATGGAAAAGATTGCACGATCGATGTCGGGTGTTGCCATTCAT 67 ************** ****************************** ********* **** consensus_7737#0 GGTTTCCTTTCCACTTTCTGTTTTGACTATTTTAGTGAATACGTTTTTTTTAATTTCATT 960 consensus_7737#1 GGTTTCCTTTCCACTTTCTGTTGCGACTATTTTAGTGAGTACGTTTTTGTTATTTTCATT 127 ********************** ************** ********* *** ******* consensus_7737#0 TTTTTCTACTTATTTCTACGATCATACAAACATATACAAGTCTGTCTCGCCCTCCGAAAC 1020 consensus_7737#1 TTTCCCTACTTATTCCTACGATCATACAGCCATATACATGTCTGTCTCGCCCTC------ 181 *** ********* ************* ******** *************** consensus_7737#0 ACACCTACATAAACACGGTGAAAATAAAAAGAAGAAGAAAAAACACACACACACACCTCC 1080 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 AACTGTGTGTACACGCAGACAAAACATATCCCAAACATCAAGCCTAGTTCTCGATAGGGA 1140 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 AGAGTAGGCACTGAAAGGCTCTAAAAGCAGCACATACAAGAAGGAAGAACAAACCGAAAA 1200 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 CGAGAGCAGAAATACGTGTACGTGTGTGAGTATGTGTACGTGTCGGTGTGGGCGAGCGAT 1260 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 TGACTGTGGTAAAGCCCAGCGCGTATTACAACAGGGTGCGAACAGCCGAACAACTATGTT 1320 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 CCATTTAATTTACCTGTACTTTTTTTTAAATATTACAAACTGTCGTCTCCCCTTTTTACT 1380 consensus_7737#1 ------------------------------------------------------------ consensus_7737#0 ATATGCTTTAAGTTTAAAACAATCTATATCT 1411 consensus_7737#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||