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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1283 fasta sequence
[CCGCCCACGCGTCCGCGAAACCGAACCGACGAGCCTGCTGACCTGTCCGCTCGCTTCAACCGCTTCCGCAAGTGCTCCCGTTGGCGGTAACAAGCATAAACAACAACGGGCCGATGATGATGGTCACAAGGAGGAGGAAAACTTGGCCAAAGTGATGCGCGTTGAATCACCGAAAAGTGTCGAAGAAGCCGACACATCCAGCATTAGCTCGATGAGCAGTAGCGATTGCTCGCAAAATCAACCGCAGCAAGGTGCTGCAGCACAACAGCCGCCCGAGAAGCTAGAGGGAAATAGTTCGGCAGCGAACTCAACCGTTCCCCAAAAGCCGAATGCCGCAAAGGATGGCGACGGTGGGCGGGCTGCGATAGAAGCCAATGCACCCACACCCTCGACATCCCGTTCGAGCGGTGGAATGGCGCGCAATCGAGCTATCGATCAACAGTTCGAGATGAAGATACGCCGAATGTTTGTTGTTTAACAAGCTGGTTGACCTGATGCCAGAGGCACTGTGCCAGCCGAAGAAAAACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGCCGCGCATGTTTTCTATTGAGCAGGATGCGCAGGTAACTTAGTAAG-CGATGATGATGGCGGCAGCAGAAAAAAACACACACACACACACAACACGGAGCAGATTTTATGATATTTCGGGAGGACACTGCCAGTATGTCTGCGTGCTCCATTCTTCCCTCTTGAAACGTTCTATTGTCGATCATAATGTGATACAATTGCAGTCCTGCGGGTAAATGGG-AAAAAAAAACAAACACGACGAACAAAAAGCATAGCTTCATGTGTGAGGTGTGAAATATGACACTCAGTACAGTGCTTTCACGATTTGATTTACATCCTTAGTAATAGAGACCGATCAGCAAGGAAATTGAGCGTTTTGACGGTAAAGGATCGTTGTAGAGGTGTAGTCTTCGAAGCATTCAGCTCTCGCACGCCATTAACTTTATTTGCAACTTTGCGCGCTTACATACTATTTTGGGTTACACTGAACAAGTTTTCCAGCTCTTCCCTCAGTTCTCGAAAGTGAATAGATGTGGTATGTTCGTGTTTTGTGCGGTATTGTTCCATATTTTATTGAGTTTGTCTCGAAATTAAAGTTTAATATTGTGACGCACTTGTGGAATGTTATGTTTGTTTTTGTAAACCACCCAATTTCTGATTTTGTATAATAAAATTGACTCGAAGTACCAAAGAATGTAAAAAAAAAACGGACGCGTGGGCGG]
[+] EMBL BM594254 [CCGCCCACGCGTCCGCGAAACCGAACCGACGAGCCTGCTGACCTGTCCGCTCGCTTCAACCGCTTCCGCAAGTGCTCCCGTTGGCGGTAACAAGCATAAACAACAACGGGCCGATGATGATGGTCACAAGGAGGAGGAAAACTTGGCCAAAGTGATGCGCGTTGAATCACCGAAAAGTGTCGAAGAAGCCGACACATCCAGCATTAGCTCGATGAGCAGTAGCGATTGCTCGCAAAATCAACCGCAGCAAGGTGCTGCAGCACAACAGCCGCCCGAGAAGCTAGAGGGAAATAGTTCGGCAGCGAACTCAACCGTTCCCCAAAAGCCGAATGCCGCAAAGGATGGCGACGGTGGGCGGGCTGCGATAGAAGCCAATGCACCCACACCCTCGACATCCCGTTCGAGCGGTGGAATGGCGCGCAATCGAGCTATCGATCAACAGTTCGAGATGAAGATACGCCGAATGTTTGTTGTTTAACAAGCTGGTTGACCTGATGCCAGAGGCACTGTGCCAGCCGAAGAAAAACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGCCGCGCATGTTTTCTATTGAGCAGGATGCGCAGGTAACTTAGTAAGACGATGATGATGGCGGCAGCAGAAAAAAACACACACACACACACAACACGGAGCAGATTTTATGATATT ]
[+] EMBL BM616203 [ ccgCCGAAAAGTGTCGAAGAAGCCGACACATCCAGCATTAGCTCGATGAGCAGTAGCGATTGCTCGCAAAATCAACCGCAGCAAGGTGCTGCAGCACAACAGCCGCCCGAGAAGCTAGAGGGAAATAGTTCGGCAGCGAACTCAACCGTTCCCCAAAAGCCGAATGCCGCAAAGGATGGCGACGGTGGGCGGGCTGCGATAGAAGCCAATGCACCCACACCCTCGACATCCCGTTCGAGCGGTGGAATGGCGCGCAATCGAGCTATCGATCAACAGTTCGAGATGAAGATACGCCG ATGTTTGTTGTTTAACAAGCTGGTTGACCTGATGCCAGAGGCACTGTGCCAGCCGAAGAAAAACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGCCGCGCATGTTTTCTATTGAGCAGGATGCGCAGGTAACTTAGTAAG CGATGATGATGGCGGCAGCAGAAAAAAACACACACACACACACAACACGGAGCAGATTTTATGATATTTCGGGAGGACACTGCCAGTATGTCTGCGTGCTCCATTCTTCCCTCTTGAAACGTTCTATTGTCGATCATAATGTGATACAATTGCAGTCCTGCGGGTAAATGGG AAAAAAAAACAAACCCGACGAACAAAAAGCATAGCTTCATGTGTGAGGTGTGAAATATGACACTCAGTACA ]
[+] EMBL BM610874 [ ccgGCCAGAGGCACTGTGCCAGCCGAAGAAAAACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGCCGCGCATGTTTTCTATTGAGCAGGATGCGCAGGTAACTTAGTAAG CGATGATGATGGCGGCATCAGAAAAAAACACACACACACACACAACACGGAGCAGATTTTATGATATTTCGGGAGGACACTGCCAGTATGTCTGCGTGCTCCATTCTTCCCTCTTGAAACGTTCTATTGTCGATCATAATGTGATACAATTGCAGTCCTGCGGGTAAATGGGAAAAAAAAAACAAACACGACGAACAAAAAGCATAGCTTCATGTGTGAGGTGTGAAATATGACACTCAGTACAGTGCTTTCACGATTTGATTTACATCCTTAGTAATAGAGACCGATCAGCAAGGAAATTGAGCGTTTTGACGGTAAAGGATCGTTGTAGAGGTGTAGTCTTCGAAGCATTCAGCTCTCGCACGCCATTAACTTTATTTGCAACTTTGCGCGCTTACATACTATTTTGGGTTACAC ]
[+] EMBL CNS094NV [ GAGG ACTGTGCCAGCCGAAGAAAAACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGCCGCGCATGTTTTCTATTGAGCAGGATGCGCAGGTAACTTAGTAAG CGATGATGATGGCGGCAGCAGAAAAAAACACACACACACACACAACACGGAGCAGATTTTATGATATTTCGGGAGGACACTGCCAGTATGTCTGCGTGCTCCATTCTTCCCTCTTGAAACGTTCTATTGTCGATCATAATGTGATACAATTGCAGTTCTGCGGGTAAATGGGAAAAAAAAAACAAACACGACGAACAAAAAGCATAGCTTCATGTGTGAGGTGTGAAATATGACACTCAGTACAGTGCTTTCACGATTTGATTTACATCCTTAGTAATAGAGACCGATCAGCAAGGAAATTGAGCGTTTTGACGGTAAAGGATCGTTGTAGAGGTGTAGTCTTCGAAGCATTCAGCTCTCGCACGCCATTAACTTTATTTGCAACTTTGCGCGCTTACATACTATTTTG ]
[-] EMBL CNS094NW [ ACCCTGCAGTATTTTAGCATCGGATGGCCGCGCATGTTTTCTATTGAGCAGGATGCGCAGGTAACTTAGTAAG CGATGATGATGGCGGCAGCAGAAAAAAAAAAAAAAAAACACACAACACGGAGCAGATTTTATGATATTTCGGGAGGACACTGCCAGTATGTCTGCGTGCTCCATTCTTCCCTCTTGAAACGTTCTATTTTCGATCATAATGTGATACAATTGCAGTCCTGCGGGTAAATGGGAAAAAAAAAACAAACACGACGAACAAAAAGCATAGCTTCATGTGTGAGGTGTGAAATATGACACTCAGTACAGTGCTTTCACGATTTGATTTACATCCTTAGTAATAGAGACCGATCAGCAAGGAAATTGAGCGTTTTGACGGTAAAGGATCGTTGTAGAGGTGTAGTCTTCGAAGCATTCAGCTCTCGCACGCCATTAACTTTATTTGCAACTTTGCGCGCTTACATACTATTTTGGGTTACACTGAACAAGTTTTCCAGCTCTTCCCTCAGTTCTCGAAAGTGAATAGATGTGGTATGTTCGTGTTTTGTGCGGTATTGTTCCATATTTTATTGAGTTTGTCTCGAAATTAAAG ]
[-] EMBL BM613761 [ GTATGTCTGCGTGCTCCATTCTTCCCTCTTGAAACGTTCTATTGTCGATCATAATGTGATACAATTGCAGTCCTGCGGGTAAATGG AAAAAAAACAAACACGACGAACAAAAAGCATAGCTTCATGTGTGAGGTGTGAAATATGACACTCAGTACAGTGCTTTCACGATTTGATTTACATCCTTAGTAATAGAGACCGATCAGCAAGGAAATGGAGCGTTTTGACGGAAAAGGATCGTTGTAGAGGTGTAGTCTTCGAAGCATTCAGCTCTCGCACGCCATTAACTTTATTTGCAACTTTGCGCGCTTACATACTATTTTGGGTTACACTGAATACGTTTTCCAGCCCTTCGCTCAGTTCTCGAAAGTGAATAGATGTGGTATGTTCGTGTTTTGTGCGGTATTGTTCCATATTTTATTGAGTTTGTCTCGAAATTAAAGTTTAATATTGTGACGCACTTGTGGAATGTTATGTTTGTTTTTGTAAACCACCCAATTTCTGATTTTGTATAATAAAATTGACTCGAAGTACCAAAGAATGTAAAAAAAAAACGGACGCGTGGGCGG]
consensusID : consensus_7739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[CGAGCAACGATTGATTGTGAAAAGGACGAGATATACGTTTTAACGAGTCTAAGCAAGGAAAAGGAGCGGCGTGATTTGAACATCAATTCCTTCTGGTTGTTCTCGCTGTCGAAGAAAGAATGGTGCTGCGTGTATAAGAGTGAGCATTCGAATGGGGAAAATTGTTACCAGAAGAGTCAAAACACCTGCCATGAGCCATGCCCGCGGTATGCGCACCAGATCGTGTACGACACCACCAACCAAGTGCATTTCCTGTTCGGTGGCAATCCTGGAACGAACTCGAACGTTCGGTTGGACGATTTTTGGGTGCTGCGGCTCGAGAAACCGAACCGGGGCAACATACTGCGCTACTGTAAATACCTGCTAAGGAAGCAAGAGTACGAAGAGATCACTAAAAACGATCCCCTGTCGGCAATACTGTACCTGCAAACGAAGCTGTACGACATCATCGATCACAGTGATCCCGTTCAGTTGAAAGAATTTCACAAGCTGGCCTCGTTGCTGTTCAAGTCCGATACGGTGGACGGCGAAACCGAACCGACGAGCCTGCTGACCTGTCCGCTCGCTTCAACCGCTTCCGCAAGTGCTCCCGTT]
[+] EMBL BX628674 [CGAGCAACGATTGATTGTGAAAAGGACGAGATATACGTTTTAACGAGTCTAAGCAAGGAAAAGGAGCGGCGTGATTTGAACATCAATTCCTTCTGGTTGTTCTCGCTGTCGAAGAAAGAATGGTGCTGCGTGTATAAGAGTGAGCATTCGAATGGGGAAAATTGTTACCAGAAGAGTCAAAACACCTGCCATGAGCCATGCCCGCGGTATGCGCACCAGATCGTGTACGACACCACCAACCAAGTGCATTTCCTGTTCGGTGGCAATCCTGGAACGAACTCGAACGTTCGGTTGGACGATTTTTGGGTGCTGCGGCTCGAGAAACCGAACCGGGGCAACATACTGCGCTACTGTAAATACCTGCTAAGGAAGCAAGAGTACGAAGAGATCACTAAAAACGATCCCCTGTCGGCAATACTGTACCTGCAAACGAAGCTGTACGACATCATCGATCACAGTGATCCCGTTCAGTTGAAAGAATTTCACAAGCTGGCCTCGTTGCTGTTCAAGTCCGATACGGTGGACGGCGAAACCGAACCGACGAGCCTGCTGACCTGTCCGCTCGCTTCAACCGCTTCCGCAAGTGCTCCCGTT]
consensusID : consensus_7739#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[GAATCGGCACGAGGNGTCAGCAAGGGTGCGTGCAGCACAACAGCCGCCCGAGAAGCTAGAGGGAAATAGTTCGGCAGCGAACTCAACCGTTCCCCAAAAGCCGAATGCCGCAAAGGATGGTGACGGTGGGCGGGCTGCGATAGAAGCCAATGCACCCACACCCTCGGACATCCCGTTCGAGCGGTGGAATGGCGCGCAATCGAGCTATCGAGTCAACAGTTCGAGATGAAGATACGCCGGATGGTTTGTTGTTTAACAAGCTGGTTGACCTGATGCCAGAGGCACTGTGCCAGCCGAAGAAAAACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGCTGCGCATGTTTTCTATTGAGCAGGATGCGCAGGTAACTTAGTAAGCGATGATGATGGCGGCAGCAGAAAAAAAGCACACAC]
[+] EMBL BX469555 [GAATCGGCACGAGGNGTCAGCAAGGGTGCGTGCAGCACAACAGCCGCCCGAGAAGCTAGAGGGAAATAGTTCGGCAGCGAACTCAACCGTTCCCCAAAAGCCGAATGCCGCAAAGGATGGTGACGGTGGGCGGGCTGCGATAGAAGCCAATGCACCCACACCCTCGGACATCCCGTTCGAGCGGTGGAATGGCGCGCAATCGAGCTATCGAGTCAACAGTTCGAGATGAAGATACGCCGGATGGTTTGTTGTTTAACAAGCTGGTTGACCTGATGCCAGAGGCACTGTGCCAGCCGAAGAAAAACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGCTGCGCATGTTTTCTATTGAGCAGGATGCGCAGGTAACTTAGTAAGCGATGATGATGGCGGCAGCAGAAAAAAAGCACACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7739#0 CCGCCCACGCGTCCGCGAAACCGAACCGACGAGCCTGCTGACCTGTCCGCTCGCTTCAAC 60
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 CGCTTCCGCAAGTGCTCCCGTTGGCGGTAACAAGCATAAACAACAACGGGCCGATGATGA 120
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 TGGTCACAAGGAGGAGGAAAACTTGGCCAAAGTGATGCGCGTTGAATCACCGAAAAGTGT 180
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------CGAGCAACGATTGATTGTGAAAAGGACGAGATATACGTTTTAACGAGT 48
consensus_7739#0 CGAAGAAGCCGACACATCCAGC---ATTAGCTCGATGAGCAGTAGCGATTGCTCGCAAAA 237
consensus_7739#2 --------------------------------------------GAATCGGCACGAGGNG 16
consensus_7739#1 CTAAGCAAGGAAAAGGAGCGGCGTGATTTGAACATCAATTCCTTCTGGTTGTTCTCGCTG 108
* *
consensus_7739#0 TCAACCGCAGCAAGGTGC-TGCA-GCACAACAGCCGCCCGAGAAGCTAGAGGGAAATAGT 295
consensus_7739#2 TCAGCA-----AGGGTGCGTGCA-GCACAACAGCCGCCCGAGAAGCTAGAGGGAAATAGT 70
consensus_7739#1 TCGAAGAAAGAATGGTGC-TGCGTGTATAAGAGTGAGCATTCGAAT--GGGGAAAATTGT 165
** * ***** *** * * ** ** * * * ** **** **
consensus_7739#0 TCGGCAGCGAACTCAACCGTTCCCCAAAAGCCGAATGCCGCAAAGGATG-GCGACGGTGG 354
consensus_7739#2 TCGGCAGCGAACTCAACCGTTCCCCAAAAGCCGAATGCCGCAAAGGATG-GTGACGGTGG 129
consensus_7739#1 TACCAGAAGAGTCAAAACACCTGCCATGAGCC--ATGCC-CGCGGTATGCGCACCAGATC 222
* ** ** * *** **** ***** * * *** * * *
consensus_7739#0 GCGGGCTGCGATAGAAGCCAA-TGCACCCACACCCTCG--ACATCCCGTTCGAGCGGTGG 411
consensus_7739#2 GCGGGCTGCGATAGAAGCCAA-TGCACCCACACCCTCGG-ACATCCCGTTCGAGCGGTGG 187
consensus_7739#1 GTGTACGACACCACCAACCAAGTGCATTTCCTGTTCGGTGGCAATCCTGGAACGAACTCG 282
* * * * * * **** **** * * ** ** * * *
consensus_7739#0 AATGG-CGCGCAATCGAGCTATCGA-TCAACAGTTCGAGA---TGAAGATACGCCGAATG 466
consensus_7739#2 AATGG-CGCGCAATCGAGCTATCGAGTCAACAGTTCGAGA---TGAAGATACGCCGGATG 243
consensus_7739#1 AACGTTCGGTTGGACGATTTTTGGGTGCTGCGGCTCGAGAAACCGAACCGGGGCAACATA 342
** * ** *** * * * * * * ****** *** ** **
consensus_7739#0 -TTTGTTGTTTAACAAGCTGGTTGACCTGATGCCAGAGGCACTGTGCCAGCCGAAGAAAA 525
consensus_7739#2 GTTTGTTGTTTAACAAGCTGGTTGACCTGATGCCAGAGGCACTGTGCCAGCCGAAGAAAA 303
consensus_7739#1 CTGCGCTACTGTAAATACCTGCTAA---GGAAGCAAGAGTACGAAG--AGATCACTAAAA 397
* * * * * * * * * * * ** * ** * ** * ****
consensus_7739#0 ACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGC 585
consensus_7739#2 ACATTAGCGATTTTGTGCTACTGTAGTAAAACACCCTGCAGTATTTTAGCATCGGATGGC 363
consensus_7739#1 ACGATCCCCTGTCGGCAATACTGTACCTGCAAACGAAGCTGTACGACATCATCG-ATCAC 456
** * * * * ******* * ** ** *** * ***** ** *
consensus_7739#0 CGCGCATGTTTTCTATTGAGCAGGATGCGCAGG-TAACTTAGTAAGCGATGATGATGGCG 644
consensus_7739#2 TGCGCATGTTTTCTATTGAGCAGGATGCGCAGG-TAACTTAGTAAGCGATGATGATGGCG 422
consensus_7739#1 AGTGATCCCGTTCAGTTGAAAGAATTTCACAAGCTGGCCTCGTTGCTGTTCAAGTCCGAT 516
* * *** **** * * ** * * * * ** * * * * *
consensus_7739#0 GCAGCAGAAAAAAACACACACACACACACAACACGGAGCAGATTTTATGATATTTCGGGA 704
consensus_7739#2 GCAGCAGAAAAAAA-GCACACAC------------------------------------- 444
consensus_7739#1 ACGGTGGACGGCGAAACCGAACCGACGAGCCTGCTGACCTG----TCCGCTCGCTTCAAC 572
* * ** * * * *
consensus_7739#0 GGACACTGCCAGTATGTCTGCGTGCTCCATTCTTCCCTCTTGAAACGTTCTATTGTCGAT 764
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 CGCTTCCGCAAGTGCTCCCGTT-------------------------------------- 594
consensus_7739#0 CATAATGTGATACAATTGCAGTCCTGCGGGTAAATGGGAAAAAAAAACAAACACGACGAA 824
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 CAAAAAGCATAGCTTCATGTGTGAGGTGTGAAATATGACACTCAGTACAGTGCTTTCACG 884
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 ATTTGATTTACATCCTTAGTAATAGAGACCGATCAGCAAGGAAATTGAGCGTTTTGACGG 944
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 TAAAGGATCGTTGTAGAGGTGTAGTCTTCGAAGCATTCAGCTCTCGCACGCCATTAACTT 1004
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 TATTTGCAACTTTGCGCGCTTACATACTATTTTGGGTTACACTGAACAAGTTTTCCAGCT 1064
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 CTTCCCTCAGTTCTCGAAAGTGAATAGATGTGGTATGTTCGTGTTTTGTGCGGTATTGTT 1124
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 CCATATTTTATTGAGTTTGTCTCGAAATTAAAGTTTAATATTGTGACGCACTTGTGGAAT 1184
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 GTTATGTTTGTTTTTGTAAACCACCCAATTTCTGATTTTGTATAATAAAATTGACTCGAA 1244
consensus_7739#2 ------------------------------------------------------------
consensus_7739#1 ------------------------------------------------------------
consensus_7739#0 GTACCAAAGAATGTAAAAAAAAAACGGACGCGTGGGCGG 1283
consensus_7739#2 ---------------------------------------
consensus_7739#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||