These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1180 fasta sequence [CCCCGAGCTGGACAATCACTGGGCGTTGCGCGACTTTGCCGCCCGGCTGATGGCACAGATTTGTAAAACCTTCAACACCTCCACGAACAATCTGCAAACGCGTGTGACGCGGCTCTTCAGTGCGGCACTGCAAAACGATAAAACGCCACTGTCGTCCATGTACGGCGCGCTGCAGGGTCTGTCCGAGCTGGGCACGGAGGTGACGAAGGTGTTCATCATACCACGTCTCAAGTTCATCTCCGAGCGCGTGGAACCATTGCTGCAGGGCATCACTAGCAACATTAGCAATACGGATAAAATTGCTGCCGGACACATACGAGCGATACTGCAGAAGGGCGTCCCGCCGATACTGAAAACTTTGCGAAATCCACCCGATCTGGTGGAAGAGTACAAGCGGGATTACGGCTGC-TTGGGGCAAACGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGGCGGGTGGCTCATCGGCCTCTAGTACTACGCCATCGACCGCCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCGAAAAAGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGACGACCTCTCGCATTTGGAATGAGATGNTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTT] [+] EMBL CNS08DWE [CCCCGAGCTGGACAATCACTGGGCGTTGCGCGACTTTGCCGCCCGGCTGATGGCACAGATTTGTAAAACCTTCAACACCTCCACGAACAATCTGCAAACGCGTGTGACGCGGCTCTTCAGTGCGGCACTGCAAAACGATAAAACGCCACTGTCGTCCATGTACGGCGCGCTGCAGGGTCTGTCCGAGCTGGGCACGGAGGTGACGAAGGTGTTCATCATACCACGTCTCAAGTTCATCTCCGAGCGCGTGGAACCATTGCTGCAGGGCATCACTAGCAACATTAGCAATACGGATAAAATTGCTGCCGGACACATACGAGCGATACTGCAGAAGGGCGTCCCGCCGATACTGAAAACTTTGCGAAATCCACCCGATCTGGTGGAAGAGTACAAGCGGGATTACGGCTGC TTGGGGCAAACGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGGCGGGTGGCTCATCGGCCTCTAGTACTACGCCATCGACCGCCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCGAAAAAGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAG ] [+] EMBL CNS08K1Q [ TCTCCGAGCGCGTGGAACCATTGCTGCAGGGCATCACTAGCAACATTAGCAATACGGATAAAATTGCTGCCGGACACATACGAGCGATACTGCAGAAGGGCGTCCCGCCGATACTGAAAACTTTGCGAAATCCACCCGATCTGGTGGAAGAGTACAAGCGGGATTACGGCTGCTTTGGGGCAAACGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGGCGGGTGGCTCATCGGCCTCTAGTACTACGCCATCGAACGCCACATCCATTACGGT ] [+] EMBL BX624093 [ CCCGATCTGGTGGAAGAGTACAAGCGGGATTACGGCTGC TTGGGGCAAACGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGGCGGGTGGCTCATCGGCCTCTAGTACTACGCCATCGACCGCCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCG GGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGACGACCTCTCGCATTTGGAATGAGATGNTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTT] consensusID : consensus_7749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 731 fasta sequence [ACGTGCTACTATTTTTTTCTACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGATGACCTCTCGCATTTGGAATGAGATGTTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTATAGTGTGGTAACTGCAGTCCGTTCAGTTCAATTTTCGGGTCCGAACTCCGAAAACTTGTCATGCGATGAAATAAAACGTGTACATCGGT] [-] EMBL CNS08DWF [ACGTGCTACTATTTTTTTCTACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGATGACCTCTCGCATTTGGAATGAGATGTTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTATAGTGTGGTAACTGCAGTCCGTTCAGTTCAATTTTCGGGTCCGAACTCCGAAAACTTGTCATGCGATGAAATAAAACGTGTACATCGGT] [+] EMBL BX627886 [ TACAGCCTCGATACAGCGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAAACGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGATGACCTCTCGCATTTGGAATGAGATGTTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTATAGTGTGGTAACTGC ] [-] EMBL CNS08K1R [ CGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAA ] consensusID : consensus_7749#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [AATCGCCACGAGGTGTAAACTTTTGCGAAATCCACCCGATCTTGGTGGAAGAGTACAAGCGGGATTACGGCTGCTTGGGGCAAACGTTGCACCAGTGCAGTGGTGAAGCACGGTCGGCATCGCCCTCNTCCGGTGCTGGTGGGGCGGGTGTGCTCATCGGCCTCTAGTACTACGCCATCGACCGGCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGGTAGTCCTGACGGCAACAGCCCTCCAGGCCCCAAAGCACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGGTACAGGCTCGATACAGNGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACGTAAACACCGGCAGTCAGGCGTCCCAACCACCCCGAGCAAAAGTTTGTGAGTAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTAGCATGCGGGACGCGTACAAGCCGAGCCGGTGCAANTTCAGGGCCAACATGATTNNACGGCTG] [+] EMBL BX469223 [AATCGCCACGAGGTGTAAACTTTTGCGAAATCCACCCGATCTTGGTGGAAGAGTACAAGCGGGATTACGGCTGCTTGGGGCAAACGTTGCACCAGTGCAGTGGTGAAGCACGGTCGGCATCGCCCTCNTCCGGTGCTGGTGGGGCGGGTGTGCTCATCGGCCTCTAGTACTACGCCATCGACCGGCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGGTAGTCCTGACGGCAACAGCCCTCCAGGCCCCAAAGCACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGGTACAGGCTCGATACAGNGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACGTAAACACCGGCAGTCAGGCGTCCCAACCACCCCGAGCAAAAGTTTGTGAGTAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTAGCATGCGGGACGCGTACAAGCCGAGCCGGTGCAANTTCAGGGCCAACATGATTNNACGGCTG] consensusID : consensus_7749#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 89 fasta sequence [GTGGGGCGGGTGGCTCATCGGCGTCTAGTACTACGCAATCGACGGCGACATCGATAACGGGTAGCACGAGCATCATTAGCAGCATCACG] [+] EMBL BX613073 [GTGGGGCGGGTGGCTCATCGGCGTCTAGTACTACGCAATCGACGGCGACATCGATAACGGGTAGCACGAGCATCATTAGCAGCATCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 CCCCGAGCTGGACAATCACTGGGCGTTGCGCGACTTTGCCGCCCGGCTGATGGCACAGAT 60 consensus_7749#1 ------------------------------------------------------------ consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 TTGTAAAACCTTCAACACCTCCACGAACAATCTGCAAACGCGTGTGACGCGGCTCTTCAG 120 consensus_7749#1 ------------------------------------------------------------ consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 TGCGGCACTGCAAAACGATAAAACGCCACTGTCGTCCATGTACGGCGCGCTGCAGGGTCT 180 consensus_7749#1 ------------------------------------------------------------ consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 GTCCGAGCTGGGCACGGAGGTGACGAAGGTGTTCATCATACCACGTCTCAAGTTCATCTC 240 consensus_7749#1 -------ACGTGCTACTATTTTTTTCTACACGGTAGTCCTGACGGCAACACCCTCCAGGC 53 consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 CGAGCGCGTGGAACCATTGCTGCAGGGCATCACTAGCAACATTAGCAATACGGATAAAAT 300 consensus_7749#1 CCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGC 113 consensus_7749#2 ------------------------------------AATCGCCACGAGGTGTAAACTTTT 24 consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 TGCTGCCGGACACATACGAGCGATACTGCAGAAGGGCGTCCCGCCGATACTGAAAACTTT 360 consensus_7749#1 GCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCC 173 consensus_7749#2 GCGAAATCCACCCGATCTTGGTGGAAGAGTACAAGCGGGATTACGGCTGCTTGGGGCAAA 84 consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 GCGAAATCCACCCGATCT-GGTGGAAGAGTACAAGCGGGATTACGGCTGCTTGGGGCAAA 419 consensus_7749#1 AACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTC 233 consensus_7749#2 CGTTGCACCAGTGCAGTGGTGAAGCACGGTCGGCATCGCCCTCNTCCGGTGCTGGTGGGG 144 consensus_7749#3 ------------------------------------------------------GTGGGG 6 consensus_7749#0 CGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGG 479 consensus_7749#1 AAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGG 293 * ** consensus_7749#2 CGGGTGTGCTCATCG---GCCTCTAGTACTACGCCATCGACCGGCACATCCATTACGGTT 201 consensus_7749#3 CGGGTG-GCTCATCG---GCGTCTAGTACTACGCAATCGACGGCGACATCGATAACGGGT 62 consensus_7749#0 CGGGTG-GCTCATCG---GCCTCTAGTACTACGCCATCGACCGCCACATCCATTACGGTT 535 consensus_7749#1 CCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGA-ACCGGTGACTGGC 352 * * * ** ** * ** * ** ** * * * * * ** * consensus_7749#2 AGCACGAGCAA--CAATAGCAGCAACACGGGTAGTCCTGACGGCAACAGCCCTCCAGGCC 259 consensus_7749#3 AGCACGAGCAT--CATTAGCAGCATCACG------------------------------- 89 consensus_7749#0 AGCACGAGCAA--CAATAGCAGCAACACGG-TAGTCCTGACGGCAACA--CCCTCCAGGC 590 consensus_7749#1 AGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGT 412 *** **** ** * ** consensus_7749#2 CCAAAGCACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGGTACAGGCTCGATACAGN 319 consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 CCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGC 650 consensus_7749#1 ACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAAC 472 consensus_7749#2 GCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACGTAAACACCGGCAGTCAGGCGTCC 379 consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 GCCCCGGAACGGCAGCGAAAAAGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCC 710 consensus_7749#1 ATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCAC 532 consensus_7749#2 CAACCACCCCGAGCAAAAGTTTGTGAGTAGTGCCCCAGCGTGCTCAAACGCCGTCCCCAT 439 consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 CAACCACCCC-AGCAAAAGTTTGTGA-TAGTGCCCCAGCGTGCTCAAACGCCGTCCCCAT 768 consensus_7749#1 GAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGATGACCTCTCGCATTTG 592 consensus_7749#2 CTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTAGCA 499 consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 CTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAG 828 consensus_7749#1 GAATGAGATGTTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTATAGTGTGGTA 652 consensus_7749#2 TGCGGGACGCGTACAAGCCGAGCCGGTGCAANTTCAGGGCCAACATGATTNNACGGCTG- 558 consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 CGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTG 888 consensus_7749#1 ACTGCAGTCCGTTCAGTTCAATTTTCGGGTCCGAACTCCGAAAACTTGTCATGCGATGAA 712 consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 GCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCG 948 consensus_7749#1 ATAAAACGTGTACATCGGT----------------------------------------- 731 consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 GTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTA 1008 consensus_7749#1 ------------------------------------------------------------ consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 ACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGC 1068 consensus_7749#1 ------------------------------------------------------------ consensus_7749#2 ------------------------------------------------------------ consensus_7749#3 ------------------------------------------------------------ consensus_7749#0 ACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGACGACCTCTCGCATT 1128 consensus_7749#1 ------------------------------------------------------------ consensus_7749#2 ---------------------------------------------------- consensus_7749#3 ---------------------------------------------------- consensus_7749#0 TGGAATGAGATGNTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTT 1180 consensus_7749#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||