These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1105 fasta sequence [TTTTTTTTTTTAATTAACCTTCGGTAATTTATTCGATATAAAAACTGACCTCCATCGCCTATCATCAGTGATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTGCTGCGGATGAAGCTGTGGACTCCCTAGCTGTCAAATGAAGAGTTGTTTAAGTACACTTGACGGACGGTCCTGTAGTAATTTACGAACTGGTAGTAGCGGCCATTCGAATACTCTGTGGATTCACCTTCTGCAGCGGGATTCCAATCAAATAATTTATAA-TACGCATCCAATACTTTCATAGCGTTCATCTTATACACATTTTTCTACCACAAAATTTTGATACTACTAAAGCTGCCATTTTAACAGCGGTCGATTGACTTTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAGCTTAGCTTAAGGGTGGGGCAGAAAATACAG--TAA-ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTGTTCTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCG-CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTGCTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCATCGTCTTGACGTTCTTTTTACTTTTAC] [+] EMBL CNS099DE [TTTTTTTTTTTAATTAACCTTCGGTAATTTATTCGATATAAAAACTGACCTCCATCGCCTATCATCAGTGATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTGCTGCGGATGAAGCTGTGGACTCCCTAGCTGTCAAATGAAGAGTTGTTTAAGTACACTTGACGGACGGTCCTGTAGTAATTTACGAACTGGTAGTAGCGGCCATTCGAATACTCTGTGGATTCACCTTCTGCAGCGGGATTCCAATCAAATAATTTATAA TACGCATCCAATACTTTCATAGCGTTCATCTTATACACATTTTTCTACCACAAAATTTTGATACTACTAAAGCTGCCATTTTAACAGCGGTCGATTGACATTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAGCTTAGCTTAAGGGTGGGGCAGAAAATACAG TAA ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTGTTCTGTACTGGGTTGCATCTTTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTC ] [+] EMBL CNS09DUP [ TTTTTTAATTAAACTTCGGTAATTTATTCGATATAAAAACTGACCTCCATCGCCTATCATCAGTTATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTTCTGCGGATGAAGCTGTGGACTCCCTAGCTGTAAAATGAAGAGTTGTTTAAGTACACTTGACGGACGGTCCTGTAGTAATTTACGAACTGGTAGTAGCGGCCATTCGAATACTCTGTGGATTCACCTTCTGCAGCGGGATTCCAATAAAATAATTTATAA TACGCATCCAATACTTTCATAGCGTTCATCTTATACACATTTTTCTACCACAAAATTTTGATACTACTAAAGCTGCCATTTTAACAGCGGTCGATTGACTTTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAACTTAGCTTAAGGGTGGGGCAGAAAATACAG TAA ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTTTTCTGTACTGGGTTGCATCTTTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTTAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCG CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCA ] [+] EMBL CNS0936N [ AGTGATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTGCTGCGGATGAAGCTGTGGACTCCCTAGCTGTCAAATGAAGAGTTGTTTAAGTACACTTGACGGACGGTCCTGTAGTAATTTACGAACTGGTAGTAGGGGCCATTCGAATACTCTGTGGATTCACC ] [-] EMBL BM638602 [ TTACGAACTGGTAGTAGCGGCCATTCGAATATTCTATGGATTCACCTTCGGCAGCGAGATTCCAATCACATAATTTATAATTACGCATCCAATACTTTTATAGCGTTCATCTTACACCCATTTTTCTACCACATAATTATGA TACTAAAGCTGCCATTTTAACAGCGGTCGATTGACTTTGTCTTTGATCAGCTAAAAAGGCCAACATACGCAAGAGCTTAGTTTAACGGTGGGGCAGAAAATACAGAAGAAGATTATTACGGTATTTCAGTCTCGATAGTAACAGCAGAGTGTTTTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTGCTAGACTTGGAACGTTTGAGCTATTCAATTGGGGAGAGCTACAGTCACTTTCAGTCTGGTCGTTGTTCTCATTCG CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGCTTGCCGATATCCTTAGCCATTTTCCTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCGGAAAATCGTGTGCCGTTAATTATTTTTTTCAAATCACCAGACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAATTTTTTTCCCGTTTAGGAACGCTTGTAGCTCGAGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACcgg ] [-] EMBL CNS099DD [ TACTACTAAAGCTGCCATTTTAACAGCGGTCGATTGACATTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAGCTTAGCTTAAGGGTGGGGCAGAAAATACAG TAA ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTGTTCTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCG CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTGCTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCATCGTCTTGACGTTCTTTTTACTTTTAC] [-] EMBL CNS09DUO [ ttACTTTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAGCTTAGCTTAAGGGTGGGGCAGAAAATACAG TAA ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTGTTCTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCGCCCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTGCTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCATCGTCTTGACGTTCTTTTTACTTTTAC] [-] EMBL CNS0936M [ GTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTATTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCG CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTGCTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCATCGTCTTGACGTTCTTTTTACTTTTAC] consensusID : consensus_7753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [ATCAGCTTAAATAGGCCAACATACGCAATAGCTTAGCTTAAGGTTGGGCAGTATAATACAGTAGATTATTACGGTATTTCAGTCTCGATAGTCACAGCACAGTGTTCTGTACTGGGTTGCATGTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAGCTATTCAATTGGGTAGAGCTACAGTCACTTTCAGTCTGGTCGTTGTTCTCATTCGCCCTTATACATTTCGAAGCAGCTGCTTTAATTTTTTTGCCGATATCCTTAGCCATGTTTCGTATCGATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGCCGGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAGACAGTCTGTCGTCGACCACCAGCAAGAAATTGCTTGGAATTTTTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTGTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCATAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGGGTCTGCTATTATAGGCAACGAAGCACCAAACAGTTGGATTCGAATAGATTGAAAAAACTCGTTCATCGTCTGACAAACCTNGGGGCGATTCTG] [-] EMBL AL931520 [ATCAGCTTAAATAGGCCAACATACGCAATAGCTTAGCTTAAGGTTGGGCAGTATAATACAGTAGATTATTACGGTATTTCAGTCTCGATAGTCACAGCACAGTGTTCTGTACTGGGTTGCATGTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAGCTATTCAATTGGGTAGAGCTACAGTCACTTTCAGTCTGGTCGTTGTTCTCATTCGCCCTTATACATTTCGAAGCAGCTGCTTTAATTTTTTTGCCGATATCCTTAGCCATGTTTCGTATCGATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGCCGGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAGACAGTCTGTCGTCGACCACCAGCAAGAAATTGCTTGGAATTTTTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTGTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCATAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGGGTCTGCTATTATAGGCAACGAAGCACCAAACAGTTGGATTCGAATAGATTGAAAAAACTCGTTCATCGTCTGACAAACCTNGGGGCGATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7753#0 TTTTTTTTTTTAATTAACCTTCGGTAATTTATTCGATATAAAAACTGACCTCCATCGCCT 60 consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 ATCATCAGTGATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTGCTGCGG 120 consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 ATGAAGCTGTGGACTCCCTAGCTGTCAAATGAAGAGTTGTTTAAGTACACTTGACGGACG 180 consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 GTCCTGTAGTAATTTACGAACTGGTAGTAGCGGCCATTCGAATACTCTGTGGATTCACCT 240 consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 TCTGCAGCGGGATTCCAATCAAATAATTTATAATACGCATCCAATACTTTCATAGCGTTC 300 consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 ATCTTATACACATTTTTCTACCACAAAATTTTGATACTACTAAAGCTGCCATTTTAACAG 360 consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 CGGTCGATTGACTTTGTCTTCGATCAACTAAAA-AGGCCAACATACGCTAGAGCTTAGCT 419 consensus_7753#1 ----------------------ATCAGCTTAAATAGGCCAACATACGCAATAGCTTAGCT 38 **** ** *** ************** * ********* consensus_7753#0 TAAGGGTGGGGCAGAAAATACAGTAAATTATTACGGTATTTCAGTCTCGATAGTAACAGC 479 consensus_7753#1 TAAGGTTGGGCAGTATAATACAGTAGATTATTACGGTATTTCAGTCTCGATAGTCACAGC 98 ***** **** * ********* **************************** ***** consensus_7753#0 ACAGTGTTCTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACT 539 consensus_7753#1 ACAGTGTTCTGTACTGGGTTGCATGTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACT 158 ************************ *********************************** consensus_7753#0 TGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTT 599 consensus_7753#1 TGGAACGTTTGAGCTATTCAATTGGGTAGAGCTACAGTCACTTTCAGTCTGGTCGTTGTT 218 ************ * *********** *********** ********************* consensus_7753#0 CTCATTCGCCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGC 659 consensus_7753#1 CTCATTCGCCCTTATACATTTCGAAGCAGCTGCTTTAATTTTTTTGCCGATATCCTTAGC 278 ***************************************** ************* **** consensus_7753#0 CAT-TTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAA 718 consensus_7753#1 CATGTTTCGTATCGATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGCCGGAAA 338 *** ********* *************************************** * **** consensus_7753#0 TTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCA 778 consensus_7753#1 TTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAGACAGTCTGTCGTCGACCACCAGCA 398 *********************************** ************************ consensus_7753#0 AGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGT 838 consensus_7753#1 AGAAATTGCTTGGAATTTTTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGT 458 ******** ****** ** ***************************************** consensus_7753#0 TAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTT 898 consensus_7753#1 TAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTT 518 ************************************************************ consensus_7753#0 TCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCT 958 consensus_7753#1 TCAGCTGTTCGACATTGTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCT 578 **************** ******************************************* consensus_7753#0 GCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTG 1018 consensus_7753#1 GCTCACTTTTGATTAGCATAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGGGTCTG 638 ***************** ************************************ ***** consensus_7753#0 CTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCA 1078 consensus_7753#1 CTATTATAGGCAACGAAGCACCAAACAGTTGGATTCGAATAGATTGAAAAAACTCGTTCA 698 ************* **** ** ******* ** ************************** consensus_7753#0 TCGTCTTGACGTTCTTTTTACTTTTAC- 1105 consensus_7753#1 TCGTCTGACAAACCTNGGGGCGATTCTG 726 ****** ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||