These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7763#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 968 fasta sequence [CCGTGTCGGACGATGCTGATACGCAAGCGCGTGCTGCGCACCGGCGACGGTACGCACCAGTACAACGAGCAGGAGCTGCAGGCGCTGCATGGTCGACTACGTCAACCAGCTCGATCACGAGTCGGAGCAGGCGGTGTGGGGCTGGGACGATAAGGACATGAACGAGCAGGACCGCCA-GATGCCACCGTCAGAAATAAGGCCGATTAGTGCAAGCAATGGAGGGAGAGGGAGAAGGGGAGGGAGGGGGGAGGGATATTGGGGATTAGAAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCC-TTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGCGACATTTGCGACAAGCGGAAGC-GAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGACATGACGCCAGAATCGGGTGGGCCAACGCGACAGAGAACGCACAGGGCACAGAGGGGCACAGATCGCAACCGGGCAGAACGGGAGTGTTCGCGTTTATTTATTTGTCTATCGCTATCTTAGTAATTAGCTTAAGCTTGAGT] [+] EMBL CNS08TQ4 [CCGTGTCGGACGATGCTGATACGCAAGCGCGTGCTGCGCACCGGCGACGGTACGCACCAGTACAACGAGCAGGAGCTGCAGGCGCTGCATGGTCGACTACGTCAACCAGCTCGATCACGAGTCGGAGCAGGCGGTGTGGGGCTGGGACGATAAGGACATGAACGAGCAGGACCGCCA GATGCCACCGTCAGAAATAAGGCCGATTAGTGCAAGCAATGGAGGGAGAGGGAGAAGGGGAGGGAGGGGGGAGGGATATTGGGGATTAGAAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCC TTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGG ] [+] EMBL CNS08LX3 [ ACGCAAGCGCGTGCTGCGCACCGGCGACGGTACGCACCAGTACAACGAGCAGGAGCTGCAGGCGC GCATGGTCGACTACGTCAACCAGCTCGATCACGAGTCGGAGCAGGCGGTGTGGGGCTGGGACGATAAGGACATGAACGAGCAGGACCGCCAGGATGCCACCGTCAGAAATAAGGCCGATTAGTGCAAGCAATGGAGGGAGAGGGAGAAGGGGAGGGAGGGGGGAGGGATATTGGGGATTAGAAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCCTTTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGCGACATTTGCGACAAGCGGAAGCAGAAg ] [-] EMBL CNS08LX4 [ GATTAGAAGATAGAAGCTAGAGAGAAGCACATTATTGCACCACTTCAGGGCGAGATGGAGGGCCGCGGAAAAACACACGATAAGTACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGAAAAAAAACAAACATACATTCCC TTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGTTCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGCGACATTTGCGACAAGCGGAAGC GAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGACATGACGCCAGAATCGGGTGGGCCAACGCGACAGAGAACGCACAGGGCACAGAGGGGCACAGATCGCAACCGGGCAGAACGGGAGTGTTCGCGTTTATTTATTTGTCTATCGCTATCTTAGTAATTAGCTTAAGCTTGAGT] [+] EMBL BX617135 [ GGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTCAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAG CACACACACACATACATTCCC TTTCTTTCTTAATTGCTTGAGCGATAAAAAACA CATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGTGACATTTGCGACAAGCGGAAGC GAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGACATGACGCCAGAATCGGGTGGGCCA ] [-] EMBL CNS08TQ5 [ ACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCC TTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGCGACATTTGCGACAAGCGGAAGC GAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGACATGACGCCAGAATCGGGTGGGCCAACGCGACAGAGAACGCACAGGGCACAGAGGGGCACAGATCGCAACCGGGCAGAACGGGAGTGTTCGCGTTTATTTATTTGTCTATCGCTATCTTAGTAATTAGaaa ] consensusID : consensus_7763#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [GCCCGCAGGNTAAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATATGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTATACGTTTAACTATTTTTTCTGTTTTAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCCTTTCTTTCTTAATTGCTTGAAGCGATAAAAAACACTGTAATCGATCTTGCATTTAAACAGATGCACTTGTACACGGGCAAGCTGTGAATGCTTTCGAGCTTGGTTTCTGTTCGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTCTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCTCTTCTCTCCCCCGGCCTGAATCAGTAAGAAACGGCTTTTGCGANTTGGACCAATGCGCGACATTTGCGACAAGCGGAAGCGCAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGAC] [+] EMBL AL933225 [GCCCGCAGGNTAAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATATGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTATACGTTTAACTATTTTTTCTGTTTTAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCCTTTCTTTCTTAATTGCTTGAAGCGATAAAAAACACTGTAATCGATCTTGCATTTAAACAGATGCACTTGTACACGGGCAAGCTGTGAATGCTTTCGAGCTTGGTTTCTGTTCGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTCTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCTCTTCTCTCCCCCGGCCTGAATCAGTAAGAAACGGCTTTTGCGANTTGGACCAATGCGCGACATTTGCGACAAGCGGAAGCGCAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGAC] consensusID : consensus_7763#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [CCCCGAGGTTAGATAGGAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTGTATAGCACGGGAGAACCACAGGGGACACAAAGCACACCACAGGGGAGATGGTGTTACGTTATGTTTAACTATTGTTTTAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACATACATTCCCTTTCTTTCTTAATTGCTTGAGCGATAAAAAACACATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCG] [+] EMBL AL931630 [CCCCGAGGTTAGATAGGAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTGTATAGCACGGGAGAACCACAGGGGACACAAAGCACACCACAGGGGAGATGGTGTTACGTTATGTTTAACTATTGTTTTAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACATACATTCCCTTTCTTTCTTAATTGCTTGAGCGATAAAAAACACATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCG] consensusID : consensus_7763#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [CAGGCCAAGAAATCGGCACGNTTGAGGGGATATTGGGGATTAGGAGCATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGGACACAAATGCACACCACAGCGGGAGANTGGGTGGTTACGCTGTACGGTTTAACCTAATTNTTCTATGGTGTTTAACGGCCATTGTCCTAGTCCGTANTAGTCGTCTCGTCGTCACGTTTCCTCGTCNTGGATCG] [+] EMBL BX468367 [CAGGCCAAGAAATCGGCACGNTTGAGGGGATATTGGGGATTAGGAGCATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGGACACAAATGCACACCACAGCGGGAGANTGGGTGGTTACGCTGTACGGTTTAACCTAATTNTTCTATGGTGTTTAACGGCCATTGTCCTAGTCCGTANTAGTCGTCTCGTCGTCACGTTTCCTCGTCNTGGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7763#1 ------------------------------------------------------------ consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 CCGTGTCGGACGATGCTGATACGCAAGCGCGTGCTGCGCACCGGCGACGGTACGCACCAG 60 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 ------------------------------------------------------------ consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 TACAACGAGCAGGAGCTGCAGGCGCTGCATGGTCGACTACGTCAACCAGCTCGATCACGA 120 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 ------------------------------------------------------------ consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 GTCGGAGCAGGCGGTGTGGGGCTGGGACGATAAGGACATGAACGAGCAGGACCGCCAGAT 180 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 ------------------------------------------------------------ consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 GCCACCGTCAGAAATAAGGCCGATTAGTGCAAGCAATGGAGGGAGAGGGAGAAGGGGAGG 240 consensus_7763#3 -------------------------------------------CAGGCCAAGAAATCGGC 17 consensus_7763#1 ---------------------------------GCCCGCAGGNTAAAGCACATTATTGCA 27 consensus_7763#2 ----------CCCCGAGGTTAGATAGGAG-ATAGAAGCTAGAGAGAAGCACATTATTGCA 49 consensus_7763#0 GAGGGGGGAGGGATATTGGGGATTAGAAG-ATAGAAGCTAGAGAGAAGCACATTATTGCA 299 consensus_7763#3 ACGNTTGAGGGGATATTGGGGATTAGGAGCATAGAAGCTAGAGAGAAGCACATTATTGCA 77 * ** *************** consensus_7763#1 CAACTTCAGGG-CGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCG 86 consensus_7763#2 CAACTTCAGGG-CGAGATGGAGGGCGGCGCACACACACA--CGATAAGGACATACGCTCG 106 consensus_7763#0 CAACTTCAGGG-CGAGATGGAGGGCGGCGCACACACACA--CGATAAGGACATACGCTCG 356 consensus_7763#3 CAACTTCAGGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCG 137 *********** ************** ************ ******************* consensus_7763#1 ATGAGTGTTGGGCGTGTGCGTTTGTATATGCACGGGAGAACCACAGGG-ACACAAA-GCA 144 consensus_7763#2 ATGAGTGTTGGGCGTGTGCGTT-GTATA-GCACGGGAGAACCACAGGGGACACAAA-GCA 163 consensus_7763#0 ATGAGTGTTGGGCGTGTGCGTTTGTATA-GCACGGGAGAACCACAGGG-ACACAAA-GCA 413 consensus_7763#3 ATGAGTGTTGGGCGTGTGCGTTTGTATA-GCACGGGAGAACCACAGGGGACACAAATGCA 196 ********************** ***** ******************* ******* *** consensus_7763#1 CACCACAGGG-AGATGGTGTTACGTATACGTTTAACTATTTTTTCTGTTTTAACGCTTTC 203 consensus_7763#2 CACCACAGGGGAGATGGTGTTACGT-TATGTTTAACTATT------GTTTTAACGCTTTC 216 consensus_7763#0 CACCACAGGG-AGATGGTGTTACGT-TATGTTTAACTATTTTTT-TGTTTTAACGCTTTC 470 consensus_7763#3 CACCACAGCG-GGAGANTGGGTGGT-TACGCTGTACGGTTT-----AACCTAAT-TNTTC 248 ******** * ** ** ** ** * * ** ** *** *** consensus_7763#1 TATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACA-CACACACATACATTCCC 262 consensus_7763#2 TATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACA-CACACA--TACATTCCC 273 consensus_7763#0 TATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACA-CACACACATACATTCCC 529 consensus_7763#3 TAT--GGTGTTTAACGGCCATTGTCCTAGTCCGTANTAGTCGTCTCGTCGTCACGTTTCC 306 *** * * * * * ** ** *** * * * * * ** ** ** consensus_7763#1 TTTCTTTCTTAATTGCTTGAAGCGATAAAAAACA-CTGTAATCGATCTTGCATTTAAACA 321 consensus_7763#2 TTTCTTTCTTAATTGCTTGA-GCGATAAAAAACA-CATGGATCGATCTTGCATTTAGAAC 331 consensus_7763#0 TTTCTTTCTTAATTGCTTGA-GCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAAC 588 consensus_7763#3 T--CGTCNTGGATCG--------------------------------------------- 319 * * * * ** * consensus_7763#1 GATGCACTTGTACACGGGCAAGCTGTGAATGCTTTCGAGCTTGGTTTCTGTTCGTGAAAA 381 consensus_7763#2 AGTGCACTTG-ACACGGGCAAG-TGTGAATGCTTTCG----------------------- 366 consensus_7763#0 AGTGCACTTG-ACACGGGCAAG-TGTGAATGCTTTCGAGCTTGGTTTTTGTT-GTGAAAA 645 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 GGGGCTGTGGGAGGCTGTGGAAGATTCTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCAT 441 consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 GGGGCTGTGGGAGGCTGTGGAAGATT-TTTGCGGCAGGCCTAAACCTTTCCTAAAGGCAT 704 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 CTCTTCTCTCCCCCGGCCTGAATCAGTAAGAAACGGCTTTTGCGANTTGGACCAATGCGC 501 consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 CCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGC 764 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 GACATTTGCGACAAGCGGAAGCGCAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCA 561 consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 GACATTTGCGACAAGCGGAAGCG-AAAGTGAACAGTGGGAAGAACTTAAACGAACAACCA 823 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 ATGAC------------------------------------------------------- 566 consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 ATGACATGACGCCAGAATCGGGTGGGCCAACGCGACAGAGAACGCACAGGGCACAGAGGG 883 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 ------------------------------------------------------------ consensus_7763#2 ------------------------------------------------------------ consensus_7763#0 GCACAGATCGCAACCGGGCAGAACGGGAGTGTTCGCGTTTATTTATTTGTCTATCGCTAT 943 consensus_7763#3 ------------------------------------------------------------ consensus_7763#1 ------------------------- consensus_7763#2 ------------------------- consensus_7763#0 CTTAGTAATTAGCTTAAGCTTGAGT 968 consensus_7763#3 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||