These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1008 fasta sequence [CGCGCACATGTGGCCTTTTTTTTTTTTTTTTAAACATTAACAATTTCATATTTATTTAACATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAACTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGTAAGTCGGGTTGACTTTTACAAATTC-ATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTA-TTTG-TGAACCAATGGCGG-TGAAA-TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCACGGTAGCGACTGTTCACGC-TCAA-TCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT-T-TTGCATGCTTT-CCGTT-TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGCATTTCT-TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT-CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTAGCTTCAGCTCTTGCCAACGATTGACAACGAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTT] [-] EMBL CNS09ECV [CGCGCACATGTGGCCTTTTTTTTTTTTTTTTAAACATTAACAATTTCATATTTATTTAACATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAACTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGTAAGTCGGGTTGACTTTTACAAATTC ATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTA TTTG TGAACCAATGGCGG TGAAA TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCACGGTAGCGACTGTTCACGC TCAA TCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT T TTGCATGCTTT CAGTT TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGCATTTCT TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGt ] [+] EMBL CNS09HSA [ ATTTCATATTTATTTAACATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAACTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGTAAGTCGGGTTGACTTTTACAAATTC ATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTATTTTGTTGAACCAATGGCGGTTGAAATTTGGTGCTCGTAAGTTGCAAGCCAAATGCCCGGCAAATCGG ] [+] EMBL CNS09ECW [ TTAACATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAACTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGTAAGTCGGGTTGACTTTTACAAATTC ATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTA TTTG TGAACCAATGGCGG TGAAA TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCACGGTAGCGACTGTTCACGC TCAA TCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT T TTGCATGCTTT CAGTT TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGCATTTCT TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTAGCTTCAGCTCTTGCCAACGATTGACAACGAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTT] [-] EMBL BM582796 [ AAACTCAAACTCACTGCATTTCTAGATCCGTTTTAAAGCCAACCTTTGCGGCCGGTA TTTG TGAACCAATGGCGG TGAAA TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCGATTCCGCGCCCACGGTAGCGACTGTTCACGC TCAA TCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT T TTGCATGCTTT CCGTT TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCACTGAGCAGGTAATGCCAGAATGCGAGCATTTCT TCATAGGATGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTcgg ] [-] EMBL BM637910 [ GCGGCCGGTA TTTG TGAACCAATGGCGG TGAAA TTGGTGCTCGTAAGTCGCAAGCCAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCACGGTAGCGACTGTTCACGC TCAA TCCGTACGCCGTAAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATT T TTGCATGCTTT CCGTT TTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTATAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGAATTTCT TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTTGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACcgg ] [-] EMBL AL694976 [ CTTTCAGTATTTCGGTGGCGATTCCGCGCCCACGGTAGCGACTATTCACGCGTCAAGTCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTTCGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATTGTGTTGCATGCTTTGCCGTTGTTTATCAAATCCGTTAGGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGTTGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCACTGAACAGGTAATGCCAGAATGCGAGCATTTCTGTCATA GACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCTGCTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCAGGAGCTTCGAACGTCCACCACACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATAATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTAGCTTCAGCTCTTttaaccctg ] [-] EMBL CNS09HS9 [ TTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGAGCAGGTAATGCCAGAATGCGAGCATTTCT TCATAGGACGCGGGAATGTGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCT CTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGt ] consensusID : consensus_7764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [GAATGCCGAGCATTTCTTCATAGGACGCGGGNATGTCGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCTNTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCTACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTGCAGCTTCAGCTCTTGCCAACGATACACTCGTGCGGATTCTTGCC] [-] EMBL BX469771 [GAATGCCGAGCATTTCTTCATAGGACGCGGGNATGTCGTCGAACCCGGCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATCATCGAATCGATCTTCCGTTAAGTCCTNTACACGGTACGTCACCAGCGCACCATCCTCACGGTCCGGATCGGGAGCTTCGAACGTCCTACCAAACATTCGGAAAAGGTACGTTGGCCGGTCGTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTCCTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTGCAGCTTCAGCTCTTGCCAACGATACACTCGTGCGGATTCTTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7764#0 CGCGCACATGTGGCCTTTTTTTTTTTTTTTTAAACATTAACAATTTCATATTTATTTAAC 60 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 ATCACTACATTTAAAAGCAACTTCGCCTTACATCACACACTCACATTTTCCGCCAAGTAA 120 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 CTCATTCAATCGGTAGGCTCATCAGCTTTAGACTTTTGCTCTTGATTCCATCGAAGGTGT 180 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 AAGTCGGGTTGACTTTTACAAATTCATCGTATTGCATTTCTAGATCCGTTTTAAAGCCAA 240 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 CCTTTGCGGCCGGTATTTGTGAACCAATGGCGGTGAAATTGGTGCTCGTAAGTCGCAAGC 300 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 CAAATGCCCGGCAAATCGGTCGACGTGCTTTCAGTATTTCGGTGGCAATTCCGCGCCCAC 360 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 GGTAGCGACTGTTCACGCTCAATCCGTACGCCGTCAAGTACTTATCCACACCGTACCGTT 420 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 CGAATAGGTTCACCGTATCGGTCATGTACTCGTTGACGGCAACCAATTTTTGCATGCTTT 480 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 CCGTTTTTATCAAATCCGTTACGTCGTGTTTATCGCTGGCCATCTTCACCGACAGCAGGT 540 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 TGGCTCCTACCATCTCTTTGGATCCTTCCTTGTAGCATACTATGGTAAACTTCTCGCTGA 600 consensus_7764#1 ------------------------------------------------------------ consensus_7764#0 GCAGGTAATGCCAGAATGC-GAGCATTTCTTCATAGGACGCGGGAATGT-GTCGAACCCG 658 consensus_7764#1 -------------GAATGCCGAGCATTTCTTCATAGGACGCGGGNATGTCGTCGAACCCG 47 ****** ************************ **** ********** consensus_7764#0 GCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATC 718 consensus_7764#1 GCCATACGAACAAAGTGGCTCGTCGTCAAGGAAATGTTCGGTGTACAGTTTGATAGCATC 107 ************************************************************ consensus_7764#0 ATCGAATCGATCTTCCGTTAAGTCCTCTACACGGTACGTCACCAGCGCACCATCCTCACG 778 consensus_7764#1 ATCGAATCGATCTTCCGTTAAGTCCTNTACACGGTACGTCACCAGCGCACCATCCTCACG 167 ************************** ********************************* consensus_7764#0 GTCCGGATCGGGAGCTTCGAACGTCC-ACCAAACATTCGGAAAAGGTACGTTGGCCGGTC 837 consensus_7764#1 GTCCGGATCGGGAGCTTCGAACGTCCTACCAAACATTCGGAAAAGGTACGTTGGCCGGTC 227 ************************** ********************************* consensus_7764#0 GTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTC 897 consensus_7764#1 GTTCCCAGGGCATGATGCGTTTGAGAGAAGTCAGAATCACAGCTTAAGGTTACACAGTTC 287 ************************************************************ consensus_7764#0 CTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTT--AGCTTCAGCTCTTGCCAACG 955 consensus_7764#1 CTCGAACACTGCTGCAGCTTTGGTGGCTAGCGGTGGTTGCAGCTTCAGCTCTTGCCAACG 347 ************************************** ******************** consensus_7764#0 ATTGACA-ACGAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTT 1008 consensus_7764#1 ATACACTCGTGCGGATTCTTGCC------------------------------- 370 ** ** * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||