|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1057 fasta sequence
[CCGGCAACATCACGCTTTATTCTTTACCTTTCCCAACTCTACATCTTGCAGAGCGACTCCACGTAAGTACTTCGATTGAAAAGCAAAATGATTCCATTACAAAGAGCAAACAAAAAATATGAAAATCCTATAACACGTGCTGTAGCAAACAGCAAACAGCAAACATTTAAACAATTCTCAACAACAACAAAAGAACTATACAATGCAAGCGATGTATTTACCGTGTTTTAGGGCACAGAAACTGAAAGGCGCACGGGAATGTTATAACTAAATATAAACAATATATACATATACACATGTAGGTATGTGAGCATACAAATCGTAAAGGATACCAAACGAAACAATGATGCGAGGATAAAGAGAGAAAGCAGGTGAATTGAAACAAACAGGTGCAGAGCGTTACAGATACAAGAGAAAGAAAGTTGGATGATAGGA--ATATATATATACATACATATATACAGTCGTAAGGAGAGTCGCATAAGGAAAAAAGCAAACACGGCTAAGCGCGGAACAGCGTTAAAGAATGTCTTCCATTTTCATTTTAATGATATAATCGTGTGATTAAGTAACTTTATGAACGTTCATGAACATAAGCAAAAACCTTAAAGTCAAACCAGGCGAACAGAACAGAATGGAATAAACACAACTATGTAGTGTGTATGTAGCTCTATATAAGCTTGACGGTGTTGCGGTTGAGGGAGCAAGCGAAAGGGAAGTGCCAGTTTAGTGAGTGGCAATGCAAACGGCAATTTAAAGAACACACAGCGGAATCGGTCTATGCCAACCTTCCTTTTCTCTATGTGCACAAGACTCAAAACGTTCGATTATAGGAAAGGAAATGCATATTTTCTCTCTCCAAACAATTGCACACATTCGACCATTTGGCGGCAAACAACATATACGGACACAGTAAGCGTACCGACAGCGTAACATTACATTGATCAATTCGCACCAACACATCTTCTTTGTACATAGCACACGCGCTGTACCAGCAATGCACCATGTTCCGGTTCCGGAAGCACGTGTTCCACGC--GTGTGTGTGTATGTGTGTTTGGAA]
[+] EMBL BM623009 [CCGGCAACATCACGCTTTATTCTTTACCTTTCCCAACTCTACATCTTGCAGAGCGACTCCACGTAAGTACTTCGATTGAAAAGCAAAATGATTCCATTACAAAGAGCAAACAAAAAATATGAAAATCCTATAACACGTGCTGTAGCAAACAGCAAACAGCAAACATTTAAACAATTCTCAACAACAACAAAAGAACTATACAATGCAAGCGATGTATTTACCGTGTTTTAGGGCACAGAAACTGAAAGGCGCACGGGAATGTTATAACTAAATATAAACAATATATACATATACACATGTAGGTATGTGAGCATACAAATCGTAAAGGATACCAAACGAAACAATGATGCGAGGATAAAGAGAGAAAGCAGGTGAATTGAAACAAACAGGTGCAGAGCGTTACAGATACAAG AGAAAGTTGGATGATAGGAATATATATATATACATACATATATACAGTCGTAAGGAGAGTCGCATAAGGAAAAAAGCAAACACGGCTAAGCGCGGAACAGCGTTAAAGAATGTCTTCCATTTTCATTTTAATGATATAATCGTGTGATTAAGTAACTTTATGAACGTTCATGAACATAAGCAAAAACCTTAAAGTCAAACCAag ]
[+] EMBL BX613683 [ GAGAAAGCAGGTGAATTGAAACAAACAGGTGCAGAGCGTTTCAGATACAAGAGAAAGAAAGTTGGATGATAGGA ATATATATATACATACATATATACAGTCGTAAGGAGAGTCGCATAAGGAAAAAAGCAAACACGGCTAAGCGCGGAACAGCGTTAAAGAATGTCTTCCATTTTCATTTTAATGATATAATCGTGTGATTAAGTAACTTTATGAACGTTCATGAACATAAGCAAAAACCTTAAAGTCAAACCAGGCGAACAGAACAGAATGGAATAAACACAACTATGTAGTGTGTATGTAGCTCTATATAAGCTTGACGGTGTTGCGGTTGAGGGAGCAAGCGAAAGGGAAGTGCCAGTTTAGTGAGTGGCAATGCAAACGGCAATTTAAAGAACACACAGCGGAATCGGTCTATGCCAACCTTCCTTTTCTCTATGTGCACAAGACTCAAAACGTTCGATTATAGGAAAGGAAATGCATATTTTCTCTCTCCAAACAATTGCACACATTCGACCATTTGGCGGCAAACAACATATACGGACACAGTAAGCGTACCGACAGCGTAACATTACATTGATCAATTCGCACCAACACATCTTCTTTGTACATAGCACACGCGCTGTACCAGCAATGCACCATGTTCCGGTTTCGGAAGCACGTGTTCCACGC GTGTGTGTGTATGTGTGTTTGGAA]
[+] EMBL BX613645 [ AGCAGGTGAATTGAAACAAACAGGTGCAGAGCGTTACAGATACAAGAGAAAGAAAGTTGGATGATAGGA ATATATATATACATACATATATACAGTCGTAAGGAGAGTCGCATAAGGAAAAAAGCAAACACGGCTAAGCGCGGAACAGCGTTAAAGAATGTCTTCCATTTTCATTTTAATGATATAATCGTGTGATTAAGTAACTTTATGAACGTTCATGAACATAAGCAAAAACCTTAAAGTCAAACCAGGCGAACAGAACAGAATGGAATAAACACAACTATGTAGTGTGTATGTAGCTCTATATAAGCTT ]
[+] EMBL BX610793 [ TATAATCGTGTGATTAATTAACTTTATGAACGTTCATGAACATAAGCAAAAACCTTAAAGTCAAACCAGGCGAACAGAACAGAATGGAATAAACACAACTATGTAGTGTGTATGTAGCTCTATATAAGCTTGACGGTGTTGCGGTTGAGGGAGCAAGCGAAAGGGAAGTGCCAGTTTAGTGAGTGGCAATGCCAACGGCAATTTAAAGAACACACAGCGGAATCGGTCTATGCCAACCTTCCTT ]
[+] EMBL BX610792 [ TGATTAATTAACTTTATGAACGTTCATGAACATAAGCAAAAACCTTAAAGTCAAACCAGGCGAACAGAACAGAATGGAATAAACACAACTATGTAGTGTGTATGTAGCTCTATATAAGCTTGACGGTGTTGCGGTTGAGGGAGCAAGCGAAAGGGAAGTGCCAGTTTAGTGAGTGGCAATGCAAACGGCAATTTAAAGAACACACAGCGGAATCGGTCTATGCCAACCTTCCTTTTCTCTATGTGCACAAGACTCAAAACGTTCGATTATAGGAAAGGAAATGCATATTTTCTCTCTCCAAACAATTGCACACATTCGACCATTTGGCGGCAAACAACATATACGGACACAGTAAGCGTACCGACAGCGTAACATTACATTGATCAATTCGCACCAACACATCTTCTTTGTACATAGCACACGCGCTGTACCAGCAATGCACCATGTTCCGGTTCCGGAAGCACGTGTTCCACGC GTGTGTGTGTATGTGTGTTTGGAA]
[+] EMBL BX618662 [ TGAGGGAGCAAGCGAAAGGGTAGTGCCAGTTTAGTGAATGGCAATGCAAACGGCAATTTAAAGAACACACAGCGGAATCGGTCTATGCCAACCTTCCTTTTCTCTATGTGCACAAGACTCAAAACGTTCGATTATAGGAAAGGAAATGCATATTTTCTCTCTCCAAACAATTGCACACATTCGACCATTTGGCGGCAAACAACATGTACGGACACAGTAAGCGTACCGACAGCGTAACATTACATTGATCAATTCGCACCAACACATCTTCTTTGTACATAGCACACGCGC TACCAGCAATGCACCATGTTCCGGTTCCGGAAGCACGTGTTCCACGCGTGTGTGTGTGTATGTGTGTTTGG ]
consensusID : consensus_7768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCCCCGAGGTTAACACCTTCCTTTTCTCTACTGTGCACAAGACTCAAAACGTTCGATTATAGGAAAGGAAATGCATATTTTCTCTCTCCAAACAATTGCACACATTCGACCATTTGGCGGCAAACAACATATACGGACACAGTAAGCGTACCGACAGCGTAACATTACATTGATCAATTCGCACCAACACATCTTCTTTGTACATAGCACACGCGCTACCAGCAATGCACCATGTTCCAGCCTCCGGAAGCACGTGTTCCACGTGTGTGTGTGTATGTGTGTTTCGAATATTTTTAACCAAAAACTCGAGTTTCTTCTCCTTCTTCAACATCGTTGTCGTCGTCGTCCCGTTCATTCCGGAAAATAATAAACAATTAATAAACGCACTCTTTCGAAACGTAACGTTTGTCGCGACACATCGCGAAATGATGTGGGCCCATCAAGGCCCCGTCGCAACAATTTCGAAAAAAAAAACAAACATATCTTGGTGTCTTTTGGTGCAGTTTTAAACTTATCGTTGAAATAATGTGTAAAAGCATACGCTCACGCTACACCGTTAAATGTCGTACAGGTTTTCCAACCTCCAACAATCAGCAGCAATCAGACTCGATGAAAAGTGGTNAAGGGGTGGTGGTCTGTGCATTGGCTAAACAATACAAAAAAGCGATTTACTG]
[+] EMBL AL931663 [CCCCCGAGGTTAACACCTTCCTTTTCTCTACTGTGCACAAGACTCAAAACGTTCGATTATAGGAAAGGAAATGCATATTTTCTCTCTCCAAACAATTGCACACATTCGACCATTTGGCGGCAAACAACATATACGGACACAGTAAGCGTACCGACAGCGTAACATTACATTGATCAATTCGCACCAACACATCTTCTTTGTACATAGCACACGCGCTACCAGCAATGCACCATGTTCCAGCCTCCGGAAGCACGTGTTCCACGTGTGTGTGTGTATGTGTGTTTCGAATATTTTTAACCAAAAACTCGAGTTTCTTCTCCTTCTTCAACATCGTTGTCGTCGTCGTCCCGTTCATTCCGGAAAATAATAAACAATTAATAAACGCACTCTTTCGAAACGTAACGTTTGTCGCGACACATCGCGAAATGATGTGGGCCCATCAAGGCCCCGTCGCAACAATTTCGAAAAAAAAAACAAACATATCTTGGTGTCTTTTGGTGCAGTTTTAAACTTATCGTTGAAATAATGTGTAAAAGCATACGCTCACGCTACACCGTTAAATGTCGTACAGGTTTTCCAACCTCCAACAATCAGCAGCAATCAGACTCGATGAAAAGTGGTNAAGGGGTGGTGGTCTGTGCATTGGCTAAACAATACAAAAAAGCGATTTACTG]
consensusID : consensus_7768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CTGAAAGGCGCACGGGAATGTTATAACTAAATATAAACAATATATACATATACACATGTAGGTATGTGAGCATACAAATCGTAAAGGATACCAAACGAAACAATGATGCGAGGATAAAGAGAGAAAGCAGGTGAATTGAAACAAACAGGTGCAGAGCGTTACAGATACAAGAGAAAGAAAGTTGAATGATAGGAATATATATATACATACATATATACAGTCGTACGGAGAGTCGCATAAGGAAAAAAGCAAACACGGCTAAGCGCGGAACAGCGTTAAAGAATGTCTTCCATTTTCATTTTAATGATATAATCGTGTGATTAAGTAACTTTATGAACGTTCATGAACATAAGCAAAAACCTTAAAGTCAAACCAAGCGAACAGAACAGAAAAGGAATAAACACAACTATGTAGCGTGTATGTAGCTCTATATAAGGTTAACGGTGTTGCGGTTGAGGGAGCAAGCGAAAGGGAAGTGCCAGTTTAGTATGTGGCGTTTAAAGAAAACACAGCAGAATCGGTCTACGACAACCTTCCTTTTCTCTATGTG]
[+] EMBL BX627505 [CTGAAAGGCGCACGGGAATGTTATAACTAAATATAAACAATATATACATATACACATGTAGGTATGTGAGCATACAAATCGTAAAGGATACCAAACGAAACAATGATGCGAGGATAAAGAGAGAAAGCAGGTGAATTGAAACAAACAGGTGCAGAGCGTTACAGATACAAGAGAAAGAAAGTTGAATGATAGGAATATATATATACATACATATATACAGTCGTACGGAGAGTCGCATAAGGAAAAAAGCAAACACGGCTAAGCGCGGAACAGCGTTAAAGAATGTCTTCCATTTTCATTTTAATGATATAATCGTGTGATTAAGTAACTTTATGAACGTTCATGAACATAAGCAAAAACCTTAAAGTCAAACCAAGCGAACAGAACAGAAAAGGAATAAACACAACTATGTAGCGTGTATGTAGCTCTATATAAGGTTAACGGTGTTGCGGTTGAGGGAGCAAGCGAAAGGGAAGTGCCAGTTTAGTATGTGGCGTTTAAAGAAAACACAGCAGAATCGGTCTACGACAACCTTCCTTTTCTCTATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7768#0 CCGGCAACATCACGCTTTATTCTTTACCTTTCCCAACTCTACATCTTGCAGAGCGACTCC 60
consensus_7768#2 ------------------------------------------------------------
consensus_7768#1 ------------------------------------------------------------
consensus_7768#0 ACGTAAGTACTTCGATTGAAAAGCAAAATGATTCCATTACAAAGAGCAAACAAAAAATAT 120
consensus_7768#2 ------------------------------------------------------------
consensus_7768#1 ------------------------------------------------------------
consensus_7768#0 GAAAATCCTATAACACGTGCTGTAGCAAACAGCAAACAGCAAACATTTAAACAATTCTCA 180
consensus_7768#2 ------------------------------------------------------------
consensus_7768#1 ------------------------------------------------------------
consensus_7768#0 ACAACAACAAAAGAACTATACAATGCAAGCGATGTATTTACCGTGTTTTAGGGCACAGAA 240
consensus_7768#2 ------------------------------------------------------------
consensus_7768#1 --------------------CCCCCGAGGTTAACACCTTCCTTTTCTCTACTGTGCACAA 40
consensus_7768#0 ACTGAAAGGCGCACGGGAATGTTATAACTAAATATAAACAATATATACATATACACATGT 300
consensus_7768#2 -CTGAAAGGCGCACGGGAATGTTATAACTAAATATAAACAATATATACATATACACATGT 59
consensus_7768#1 GACTCAAAACGTTCGATTATAGGA-AAGGAAATGCATATTTTCTCTCTCCAAACAATTGC 99
** ** ** ** * ** **** * * * * * * *** **
consensus_7768#0 AGGTATGTGAGCATACAAATCGTAAAGGATACCAAACGAAACAATGA-TGCGAGGATAAA 359
consensus_7768#2 AGGTATGTGAGCATACAAATCGTAAAGGATACCAAACGAAACAATGA-TGCGAGGATAAA 118
consensus_7768#1 ACACATTCGACCATTTGG-CGGCAAACAACATATACGGACACAGTAAGCGTACCGACAGC 158
* ** ** *** * *** * * * ** *** * * * ** *
consensus_7768#0 GAGAGAAAGCA--GGTGAATTGAAACAAACAG---------GTGCAGAGCGTTACAGATA 408
consensus_7768#2 GAGAGAAAGCA--GGTGAATTGAAACAAACAG---------GTGCAGAGCGTTACAGATA 167
consensus_7768#1 GTAACATTACATTGATCAATTCGCACCAACACATCTTCTTTGTACATAGCACACGCGCTA 218
* * * ** * * **** ** **** ** ** *** * **
consensus_7768#0 CAAGAGAAAGA--AAGTTGGATGATAGGAATATATATAT---ACATACATATATACAGTC 463
consensus_7768#2 CAAGAGAAAGA--AAGTTGAATGATAGGAATATATATAT---ACATACATATATACAGTC 222
consensus_7768#1 CCAGCAATGCACCATGTTCCAGCCTCCGGAAGCACGTGTTCCACGTGTGTGTGTGTATGT 278
* ** * * * *** * * * * * * * ** * * * * *
consensus_7768#0 GTAAGGAGAGT-CGCATAAGGAAAAAAGCAAACA-CGGCTAAGCGCGGAACAGCGTTAAA 521
consensus_7768#2 GTACGGAGAGT-CGCATAAGGAAAAAAGCAAACA-CGGCTAAGCGCGGAACAGCGTTAAA 280
consensus_7768#1 GTGTTTCGAATATTTTTAACCAAAAACTCGAGTTTCTTCTCCTTCTTCAACATCGTTGTC 338
** ** * *** ***** * * * ** **** ****
consensus_7768#0 GAATGTCTTCCATTTTCATTTTAATGATA-TAATCGTGTGATTAAGTAACTTTATG---- 576
consensus_7768#2 GAATGTCTTCCATTTTCATTTTAATGATA-TAATCGTGTGATTAAGTAACTTTATG---- 335
consensus_7768#1 GT-CGTCGTCCCGTTCATTCCGGAAAATAATAAACAATTAATAAACGCACTCTTTCGAAA 397
* *** *** ** * * *** *** * * ** ** *** * *
consensus_7768#0 ---AACGTTCATGA--ACATAAGCAAAAACCTTAAAGTCAAACCAGGCGAACAGAACAGA 631
consensus_7768#2 ---AACGTTCATGA--ACATAAGCAAAAACCTTAAAGTCAAACCAAGCGAACAGAACAGA 390
consensus_7768#1 CGTAACGTTTGTCGCGACACATCGCGAAATGATGTGGGCCCATCAAGGCCCCGTCGCAAC 457
****** * *** * *** * * * * ** * * **
consensus_7768#0 AT-----GGAATAAACACAACTATGTAGTG-TGTATGTAGCTCTA--TATAAGCTTGACG 683
consensus_7768#2 AAA----GGAATAAACACAACTATGTAGCG-TGTATGTAGCTCTA--TATAAGGTTAACG 443
consensus_7768#1 AATTTCGAAAAAAAAAACAAACATATCTTGGTGTCTTTTGGTGCAGTTTTAAACTTATCG 517
* ** *** **** ** * * *** * * * * * * *** ** **
consensus_7768#0 GTGTTGCGGT-TGAGGGAGCAAGCGAAAGGGAAGTGCCAGTTTAGTGAGTGGCAATGCAA 742
consensus_7768#2 GTGTTGCGGT-TGAGGGAGCAAGCGAAAGGGAAGTGCCAGTTTAGTATGTGGCG------ 496
consensus_7768#1 TTGAAATAATGTGTAAAAGCATACGCTCACGCTACACC-GTTAAATGTCGTACAGGTTTT 576
** * ** **** ** * ** *** * * *
consensus_7768#0 ACGGCAATTTAAAGAACACAC--AGCGGAATCGGTCTA---TGCCAACCTTCCTTTTCTC 797
consensus_7768#2 -------TTTAAAGAAAACAC--AGCAGAATCGGTCTA---CGACAACCTTCCTTTTCTC 544
consensus_7768#1 CCAACCTCCAACAATCAGCAGCAATCAGACTCGATGAAAAGTGGTNAAGGGGTGGTGGTC 636
* * ** * * ** *** * * * * * **
consensus_7768#0 TATGTGCACAAGACTCAAAACGTTCGATTATAGGAAAGGAAATGCATATTTTCTCTCTCC 857
consensus_7768#2 TATGTG------------------------------------------------------ 550
consensus_7768#1 TGTGCATTGGCTAAACAATACAAAAAAGCGATTTACTG---------------------- 674
* **
consensus_7768#0 AAACAATTGCACACATTCGACCATTTGGCGGCAAACAACATATACGGACACAGTAAGCGT 917
consensus_7768#2 ------------------------------------------------------------
consensus_7768#1 ------------------------------------------------------------
consensus_7768#0 ACCGACAGCGTAACATTACATTGATCAATTCGCACCAACACATCTTCTTTGTACATAGCA 977
consensus_7768#2 ------------------------------------------------------------
consensus_7768#1 ------------------------------------------------------------
consensus_7768#0 CACGCGCTGTACCAGCAATGCACCATGTTCCGGTTCCGGAAGCACGTGTTCCACGCGTGT 1037
consensus_7768#2 ------------------------------------------------------------
consensus_7768#1 ------------------------------------------------------------
consensus_7768#0 GTGTGTATGTGTGTTTGGAA 1057
consensus_7768#2 --------------------
consensus_7768#1 --------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||