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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1542 fasta sequence
[CGAGGTTNAAATCAAATCGCAAAGTANTTCATGTTATGTAAAAAAAAATAAAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACCAGCAGGTTAGCGCAGGTAAACAAAGTTAACGCTAACACTGTATTTAATAAGCGCGTCTGTAGCACAACTATATAACTCTTACTGTAACGGAACAGGAACAGCAGGAAG-TAAGCAGTTCGCCTGAG-GTGGGTAGGAA-AAGCTA-NCAG-TGAAAGAAAA-TCAAAGCTGAAGCGGAAGTCGCTACGATGTTACAATATAGATCGTT-ATTGTTAGCATGTGACCGGGGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAG-AAAAGAAAGCGCTACAATCATGCAA-ATGTAACATG-AAACAGATATGCAA-TGCTGTTTATTCTGGGAGGAAATGGAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTT-GTTACTTACTTCAATTGCAATGCGTACAATCTTCTCGCACTGCGTGAGGCGCAGTACGTTCCTGTGCGTTAATCTCTCGTTAGTCTCTTGCGCCGTTTTCGTCCCTGTTCTGCTTCCGTCTTTGCTGAATCTAAAAATTGGACAATTCAATCGGAATCTATTGCACACGTTTTGAGGAAGCGCAAAGCAAACATGAGCATTATAATTCGGCTAAAAGGCATAACGTGAAAAGTGTTGTGTTTATCTCAAACAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTAAACAAATAAAAGGATAAACATGCGGACTGTAGAGAGCGCGAACGGAACCAAACGTGAAGCACATACCATACCAAACAGAAATAAAATCATTCGTTTGTAAGTGAAGCGATACTTAAACAAGCGCAATGAAAGATATCTTGTGAAAACTACTGCTTGCAACAAATTGAACTAGAAAGAAATTGTTTAAATTTAATACATCTCGCGACGAAGGTGAAGTAGGAGCGGCAACAGCTGGAGCAGCATCGGCAGCATCAAAATATACAAATAATTGAAAACTAGTAGCACACACAAACACACACGAAGCTATCGTGAGTAAACTGTAAATATGATGTTTGCGTAAAAGTAATGCGAAAGTCTCACATATGCAACAGCCATTCGGATGGATGTTTAGCGGCATTCGTCAGAGCTCTAGCATACGTTGCGCACCACGCAGTGATCATGGTAGCAGCAAGATCAGCAGAAACAATAATTCAAACTACTAACGACCCTTCTCCCCTGCAGTACCAGTCTGGTAAGCGTAAAGGATAACCATAATATCAACCCATTAATAACAGCCAAAACAGCAAACAATGATGAGGTTGAGATTGTTTGAAATATCGTCTTTAACTGCTGCAAACCCCTAGAGGTAGGCTAGTAAGGGTAAGGC]
[+] EMBL AL934529 [CGAGGTTNAAATCAAATCGCAAAGTANTTCATGTTATGTAAAAAAAAATAAAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACCAGCAGGTTAGCGCAGGTAAACAAAGTTAACGCTAACACTGTATTTAATAAGCGCGTCTGTAGCACAACTATATAACTCTTACTGTAACGGAACAGGAACAGCAGGAAGCTAAGCAGTTCGCCTGAGCGTGGGTAGGAACAAGCTACNCAGCTGAAAGAAAACTCAAAGCTGAAGCGGAAGTCGCTACGATGTTACAATATAGATCGTTCATAGTTAGCATGTGACCGGGGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAGCAAAAGAAAGCGCTACAATCATGCAACATGTANCATGCAAACAGATATGCAACTGCTGTCTATTCTGGGAGGAAATGGAGGTNGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTTCGTCACTTACTTCAA ]
[+] EMBL BX617797 [ GCAGGAAG TAAGCAGTTCGCCTGAG GTGGGTAGGAA AAGCTA ACAG TGAAAGAAAA TCAAAGCTGAAGCGGAAGTCGCTACGATGTTACAATATAGATCGTT ATTGTTAGCATGTGACCGGGGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAG AAAAGAAAGCGCTACAATCATGCAA ATGTAACATG AAACAGATATGCAA TGCTGTTTATTCTGGGAGGAAATGGAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTT GTTACTTACTTCAATTGCAATGCGTACAATCTTCTCGCACTGCGTGAGGCGCAGTACGTTCCTGTGCGTTAATCTCTCGTTAGTCTCTTGCGCCGTTTTCGTCCCTGTTCTGCTTCCGTCTTTGCTGAATCTAAAAATTGGACAATTCAATCGGAATCTATTGCACACGTTTTGAGGAAGCGCAAAGCAAACATGAGCATTATAATTCGGCTAAAAGGCATAACGTGAAAAGTGTTGTGTTTATCTCAAACAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTA ]
[+] EMBL BX615021 [ AAA TCAAAGCTGAAACGGAAGTCGCTACGATGTTACAATATAGTTCGTT ATTGTTAGCATGTGACCAGCGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAG AAAAGAAAGCGCTACAATCATGCAA ATGTAACATG AAACAGATATGCAA TGCTGTTTATTCTGGGAGGAAATGGAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTT GTTACTTACTTCAATTGCAATGCGTACAATCTTCTCGCACTGCGTGACGCGCTGTACGTTCCTGTGCGTTAATCTCTCGTTAGTCTCTTGCGCCGTTTACGTCCCTGTTCTGCTTCCGTCTTTGCTGAATCTAAAAATTGAACAATTCAATCGGCATCTATTGCACACGTTTTGAGGAAGCGTAAAGCAACCATGAGCATTATAATTCGGCTAAAAGGCATAACGTGAAAAGAGTTGTGTTTATCTCAAACAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTAAACAAATAAAAGGATAAACATGCGGACTGTAGAGA ]
[+] EMBL BX609310 [ A TCAAAGCTGAAGCGGAAGTCGCTACGATGTTACAATATAGATCGTT ATTGTTAGCATGTGACCGGGGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAG AAAAGAAAGCGCTACAATCATGCAA ATGTAACATG AAACAGATATGCAA TGCTGTTTATTCTGGGAGGAAATGGAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTT GTTACTTACTTCAATTGCAATGCGTACAATCTTCTCGCACTGCGTGAGGCGCAGTACGTTCCTGTGCGTTAATCTCTCGTTAGTCTCTTGCGCCGTTTTCGTCCCTGTTCTGCTTCCGTCTTTGCTGAATCTAAAAATTGGACAATTCAATCGGAATCTATTGCACACGTTTTGAGGAAGCGCAAAGCAAACATGAGCATTATAATTCGGCTAAAAGGCATAACGTGAAAAGTGTTGTGTTTATCTCAAACAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTAAACAAATAAAAGGATAAACATGCGGACTGTAGAGAGCGCGAACGGAACCAAACGTGAAGCACATACCATACCAAACAGAAATAAAATCATTCGTTTGTAAGTGAAGCGATACTTAA ]
[+] EMBL BX613049 [ CAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTAAACAAATAAAAGGATAAACATGCGGACGGTAGAGAGCGCGAACGGAACCAAACGTGAAGCACATACCATACCAAACAGAAATAAAATCATTCGTTGGTAAGTGAAGCGATACTTAAACAAG ]
[+] EMBL BX615980 [ cACGTGAAGCACATACCATACCAAACAGAAATAAAATCATTCGTTTGTAAGTGAAGCGATACTTAAACAAGCGCAATGAAAGATATCTTGTGAAAACTACTGCTTGCAACAAATTGAACTAGAAAGAAATTGTTTAAATTTAATACATCTCGCGACGAAGGTGAAGTAGGAGCGGCAACAGCTGGAGCAGCATCGGCAGCATCAAAATATACAAATAATTGAAAACTAGTAGCACACACAAACACACACGAAGCTATCGTGAGTAAACTGTAAATATGATGTTTGCGTAAAAGTAATGCGAAAGTCTCACATATGCAACAGCCATTCGGATGGATGTTTAGCGGCATTCGTCAGAGCTCTAGCATACGTTGCGCACCACGCAGTGATCATGGTAGCAGCAAGATCAGCAGAAACAATAATTCAAACTACTAACGACCCTTCTCCCCTGCAGTACCAGTCTGGTAAGCGTAAAGGATAACCATAATATCAACCCATTAATAACAGCCAAAACAGCAAACAATGATGAGGTTGAGATTGTTTGAAATATCGTCTTTAACTGCTGCAAACCCCTAGAGGTAGGCTAGTAAGGGTAAGGC]
consensusID : consensus_7771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 752 fasta sequence
[AATCGCCCCGAGGTTAATTACCACGTTCTGCATTCCATCTGCGAAAAATGGAAAAAGAAACCTGGGCAAGAAATATCTAGAGAGAATTAGAACATGAGAAAGCTTCAAAAGTAAAATTACAATCTAAACTTAAAACAAACACTTGCGCCACCTTCACCGTCATGCTTCTCTTAAGTACAGTTTCACGTAATGTCTAGCTACAGCGGGGAAAATAGTAATGCGTTAAGCCAGCAACACAAAAGATAAACTAAGTTAAACGATAACATTATGGCANACCACACNCACAGAAACTATCATACAATACCAAGGAGAAGATCAAGCGCGCATGGTGCTGCGGTAGAAAGACAGAAGCGGCACAGCAAGCAGAAGAGCTAAAAGAAATATTCAAACGATACGCAATGCGTGAATCAAATCGCAAAGTAGTTTAGTGTTCATGTACACACAACATAATCAACAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACAGCAGGTTAGGCAGGTAAACAAAGTTAAGTAAATGTNTTTAATAAGCGCGCTCTGTAGCACANTATATAACTTTACTGTAACGGAACAGGAAAGCAGGAAGTAGCAGTTCGCCTGAGTGGGTAGGAAAAGCTAACAGTGCANAGAAAATCAAGCGTGANACGGNA]
[+] EMBL AL929799 [AATCGCCCCGAGGTTAATTACCACGTTCTGCATTCCATCTGCGAAAAATGGAAAAAGAAACCTGGGCAAGAAATATCTAGAGAGAATTAGAACATGAGAAAGCTTCAAAAGTAAAATTACAATCTAAACTTAAAACAAACACTTGCGCCACCTTCACCGTCATGCTTCTCTTAAGTACAGTTTCACGTAATGTCTAGCTACAGCGGGGAAAATAGTAATGCGTTAAGCCAGCAACACAAAAGATAAACTAAGTTAAACGATAACATTATGGCANACCACACNCACAGAAACTATCATACAATACCAAGGAGAAGATCAAGCGCGCATGGTGCTGCGGTAGAAAGACAGAAGCGGCACAGCAAGCAGAAGAGCTAAAAGAAATATTCAAACGATACGCAATGCGTGAATCAAATCGCAAAGTAGTTTAGTGTTCATGTACACACAACATAATCAACAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACAGCAGGTTAGGCAGGTAAACAAAGTTAAGTAAATGTNTTTAATAAGCGCGCTCTGTAGCACANTATATAACTTTACTGTAACGGAACAGGAAAGCAGGAAGTAGCAGTTCGCCTGAGTGGGTAGGAAAAGCTAACAGTGCANAGAAAATCAAGCGTGANACGGNA]
[+] EMBL AL933485 [ ccgaggcAAAGAT AACTAAGTT AACGATAA ATTATGGCA A AAA AAAGAAACTATCATACAATACCAAGGAGAAGATCAAGCGCGCATGGTGCTGCGGTAGAAAGACAGAAGCGG A AG AAG AGAAGAGCTAAAAGAAATATTCAAACGATACGCAATGCGTGAATCAAATCGCAAAGTAGTTTAGTGTT ATGTA A AAAAAATAAT AA AAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACAGCAGGTTAGGCAGGTAAACAAAGTTAAGTAAATGTATTTAATAAGCGCG TCTGTAGCACAa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7771#0 CGAGGTTNAAATCAAATCGCAAAGTANTTCATGTTATGTAAAAAAAAATAAAAACAAACA 60
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 AACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCCGTATGGATG 120
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 AGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCAC 180
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 GAACCAGCAGGTTAGCGCAGGTAAACAAAGTTAACGCTAACACTGTATTTAATAAGCGCG 240
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 TCTGTAGCACAACTATATAACTCTTACTGTAACGGAACAGGAACAGCAGGAAGTAAGCAG 300
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 TTCGCCTGAGGTGGGTAGGAAAAGCTANCAGTGAAAGAAAATCAAAGCTGAAGCGGAAGT 360
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 CGCTACGATGTTACAATATAGATCGTTATTGTTAGCATGTGACCGGGGGTAGGCGAAGGA 420
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 TGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAGAAAAGAAAGCGCT 480
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 ACAATCATGCAAATGTAACATGAAACAGATATGCAATGCTGTTTATTCTGGGAGGAAATG 540
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 GAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTTGTTACTTACTTCA 600
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 ATTGCAATGCGTACAATCTTCTCGCACTGCGTGAGGCGCAGTACGTTCCTGTGCGTTAAT 660
consensus_7771#1 ------------------------------------------------------------
consensus_7771#0 CTCTCGTTAGTCTCTTGCGCCGTTTTCGTCCCTGTTCTGC-TTCCGTCTTTGCTGAATCT 719
consensus_7771#1 --------AATCGCCC-CGAGGTTAATTACCACGTTCTGCATTCCATCTGCGAAAAATGG 51
* ** * ** *** ** ******* **** *** * ***
consensus_7771#0 AAAAATTGGACAATTCAATCGGAATCTATTGCACAC---GTTTTGAGGAAGCG-CAAAGC 775
consensus_7771#1 AAAAAGAAACCTGGGCAAGAAATATCTAGAGAGAATTAGAACATGAGAAAGCTTCAAAAG 111
***** * *** ***** * * **** **** ****
consensus_7771#0 AAACATGAGCATTATAATTCGGCTAAAAGGCATAA--CGTGAAAAGTGTTGTGTTTATCT 833
consensus_7771#1 TAAAATTACAATCTAAACTTAAAACAAACACTTGCGCCACCTTCACCGTCATGCTTCTCT 171
** ** * ** ** * *** * * * * ** ** ** ***
consensus_7771#0 CAAACAACGTTTATCAACCGAGAAGAACAGCC-CAGTGAAGAATTGAAAGTTATGGAATA 892
consensus_7771#1 TAAGTACAGTT--TCA--CGTAATGTCTAGCTACAGCGGGGAA--AATAGTAATGCGTTA 225
** * *** *** ** * * *** *** * *** * *** *** **
consensus_7771#0 ATTAAACAAATAAAAGGATAAAC-ATGCGGACTGTAGAGAGCGCGAACGGAACCAAACGT 951
consensus_7771#1 AGCCAGCAACACAAAAGATAAACTAAGTTAAACGATAACATTATGG--CANACCACACNC 283
* * *** *** ******* * * * * * * * **** **
consensus_7771#0 GAAGCACATACCATACCAAAC-AGAAATAAAATCATTCGTTTGTAAGTGAAGCGATACTT 1010
consensus_7771#1 ACAGAAACTATCATACAATACCAAGGAGAAGATCAAGCGCGCATG-GTGCTGCGGTAGAA 342
** * ** ***** * ** * * ** **** ** * *** *** **
consensus_7771#0 AAACAAGCGCAATGAAAGATATCTTGTGAAAACTACTGCTTGCAACAAATTGAACTAGAA 1070
consensus_7771#1 AGACAGAAGCGGCACAGCAAGC---AGAAGAGCTAAAA-----GAAATATTCAAACGATA 394
* *** ** * * * * *** * * *** ** *
consensus_7771#0 AGAAATTGTTTAAATTTAATACATCTCGCGACGAAGGTGAAGTAGGAGCGGCAACAGCTG 1130
consensus_7771#1 CGCAAT-GCGTGAATCAAA------TCGCAAAGTAG-TTTAGTGTTCATGTACACA---- 442
* *** * * *** ** **** * * ** * *** * ***
consensus_7771#0 GAGCAGCATCGGCAGCATCAAAATATACAAATA-ATTGAAAACTAGTAGCACACACAAAC 1189
consensus_7771#1 ---CAACATAATCAACAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACAC 499
** *** ** ** *** * ******* ** ** *** * *** *** **
consensus_7771#0 ACACACGAAGCTATCGTGAGTAAACTGTAAATATGATGTTTGCGTAAAAGTAATGCGAAA 1249
consensus_7771#1 ACACAACAGCATACCGTATG-GATGAGCAAATACAAAAC-------AAAGAAACACTGTA 551
***** * ** *** * * * ***** * **** ** * *
consensus_7771#0 GTCTCACATATGCAACAGCCATTCGGATGGATGTTTAGCGGCATTCGTCAGAGCTCTAGC 1309
consensus_7771#1 AACAAATAAAAACAAAACCCATGCATTTGCACGAACAGCAG-GTTAGGCAGG----TAAA 606
* * * * *** * **** * ** * * *** * ** * *** **
consensus_7771#0 ATACGTTGCGCACCACGCAGTGATCATGGTAGCAGCAAGAT-CAGCAGAAACAATAATTC 1368
consensus_7771#1 CAAAGTTAAGTA------AATGTNTTTAATAAGCGCGCTCTGTAGCACANTATATAACTT 660
* *** * * * ** * ** ** * **** * **** *
consensus_7771#0 AAACTACTAACGACCCTTCTCCCCTGCAGTACCAGTCTGG-TAAGCGTAAAGGATAACCA 1427
consensus_7771#1 TA-CTGTAACGGAACAGGAAAGCAGGAAGTAGCAGTTCGCCTGAGTGGGTAGGAAAAGC- 718
* ** * ** * * * **** **** * * ** * **** ** *
consensus_7771#0 TAATATCAACCCATTAATAACAGCCAAAACAGCAAACAATGATGAGGTTGAGATTGTTTG 1487
consensus_7771#1 TAACAGTGCANAGAAAATCAAGCGTGANACGGNA-------------------------- 752
*** * *** * * ** * *
consensus_7771#0 AAATATCGTCTTTAACTGCTGCAAACCCCTAGAGGTAGGCTAGTAAGGGTAAGGC 1542
consensus_7771#1 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||