These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 839 fasta sequence [CCGGCAGTTCAGTCTTGTGCCGTTCGCAGAAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCT-CCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGTATTTAACCGAAACCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGCTGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTCAAGT] [+] EMBL BM655333 [CCGGCAGTTCAGTCTTGTGCCGTTCGCAGAAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCT ] [+] EMBL BM579583 [ cCGCAGAAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATAT ] [+] EMBL BM636757 [ ccgGAAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGCTCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGGCGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGTCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGTATTTAACCGAAACCGAGAGT ] [+] EMBL BM652084 [ ccgAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCC ] [+] EMBL BX627077 [ CATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAANGAAAGCCGCTGCT CCAGGGTGGATTTCCACGTGCTCAACTGGAACCCG ] [+] EMBL BX605320 [ CGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCT CCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGCTGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTCAAGT] consensusID : consensus_7776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence [TCTTCTTGTTGTCCCGATGGCCGAACGACCCAGGGGCAGGGCGTCAGCGTGCCGTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATGACAACCAATTACAATACAGTTTGGTTCACTCACAGCTCAATCATGCGATACTGCTGTCGTCATCATTAAAAATTAACTGCTCAATGACGACGCGAAAGGATCTTAAAGTTTCATCAATGTTTTTCTTTTCTTTCTTTGCCCATTATGCTTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGCTGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTCAAGTATTATCGAGAAATAGCAGGGCAGCACGGAGATGACCCGTTTGGTGTAATGATGAACGCGCCGGTTTCTGAGAAAACCCTTCCTTAGTTCGATTCCCATCCAGGACTATAATAGACTTTATAATTATTCGGTCTTTGTATTATAATTAAG] [+] EMBL BX607434 [TCTTCTTGTTGTCCCGATGGCCGAACGACCCAGGGGCAGGGCGTCAGCGTGCCGTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATGACAACCAATTACAATACAGTTTGGTTCACTCACAGCTCAATCATGCGATACTGCTGTCGTCATCATTAAAAATTAACTGCTCAATGACGACGCGAAAGGATCTTAAAGTTTCATCAATGTTTTTCTTTTCTTTCTTTGCCCATTATGCTTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGCTGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTCAAGTATTATCGAGAAATAGCAGGGCAGCACGGAGATGACCCGTTTGGTGTAATGATGAACGCGCCGGTTTCTGAGAAAACCCTTCCTTAGTTCGATTCCCATCCAGGACTATAATAGACTTTATAATTATTCGGTCTTTGTATTATAATTAAG] consensusID : consensus_7776#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [ATNGCCGAGGCTGTTGTCCCGATGGCGAACGACCAGGGCAGGCGTCAGCGTGCGTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATGACAACCAATTACAATACAGTTTGGTTCACTCACAGCTCAATCATGCGATACTGCTGTCGTCATCATTAAAAATTAACTGCTCAATGACGACGCGAAAGGATCTTAAAGTTTCATCAATGTTTTTCTTTTCTTTCTTTGCCCATTATGCTTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGNGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCACCAAGTTCTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATC] [+] EMBL AL931788 [ATNGCCGAGGCTGTTGTCCCGATGGCGAACGACCAGGGCAGGCGTCAGCGTGCGTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATGACAACCAATTACAATACAGTTTGGTTCACTCACAGCTCAATCATGCGATACTGCTGTCGTCATCATTAAAAATTAACTGCTCAATGACGACGCGAAAGGATCTTAAAGTTTCATCAATGTTTTTCTTTTCTTTCTTTGCCCATTATGCTTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGNGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCACCAAGTTCTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7776#1 ------------------------------------------------------------ consensus_7776#2 ------------------------------------------------------------ consensus_7776#0 CCGGCAGTTCAGTCTTGTGCCGTTCGCAGAAACGGCCGGAGCCCAGCCACCGGTGGCGAG 60 consensus_7776#1 ------------------------------------------------------------ consensus_7776#2 ------------------------------------------------------------ consensus_7776#0 CTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCC 120 consensus_7776#1 ------------------------------------------------------------ consensus_7776#2 ------------------------------------------------------------ consensus_7776#0 GCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAG 180 consensus_7776#1 ----TCTTC----TTGTTGTCCCGATG--GCCGAACGACCCAGGGGCAGGG--CGTCAGC 48 consensus_7776#2 ---ATNGCCGAGGCTGTTGTCCCGATG--GC-GAACGACC--AGGGCAGG---CGTCAGC 49 consensus_7776#0 GATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATG 240 ** ** ** * ** * **** * ** ** ** * consensus_7776#1 GTGCC-GTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATG 107 consensus_7776#2 GTGC--GTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATG 107 consensus_7776#0 ATACAGGAGCTGGCTGACTTTGAGAAG--ATGCCGG--ACGGACCGCAGCT-TACCGTGG 295 * * * *** * ** * **** *** * *** * ** * *** * consensus_7776#1 ACAACCAATTACAATACAGTTTGGTTCACTCACAGC--TCAATCAT--GCGATACTGCTG 163 consensus_7776#2 ACAACCAATTACAATACAGTTTGGTTCACTCACAGC--TCAATCAT--GCGATACTGCTG 163 consensus_7776#0 ACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTG 355 ** * * *** ** ** * ** * ** *** * * *** ** ** consensus_7776#1 TCGTCATCATTAAAAATTAACTGCTCAA------TGACGACGCGAAAGGATCTTAAAGTT 217 consensus_7776#2 TCGTCATCATTAAAAATTAACTGCTCAA------TGACGACGCGAAAGGATCTTAAAGTT 217 consensus_7776#0 CCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCC 415 * * ** * * ** ***** * ** *** ** * * * * * consensus_7776#1 TCATCAAT--------GTTTT-----TCTTTTCTTTCTTTGCCCATTATGC--------- 255 consensus_7776#2 TCATCAAT--------GTTTT-----TCTTTTCTTTCTTTGCCCATTATGC--------- 255 consensus_7776#0 CGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGAC 475 *** * * ** * * * *** * ** consensus_7776#1 -TTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAG 314 consensus_7776#2 -TTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAG 314 consensus_7776#0 CTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAG 535 * ** * *************************************************** consensus_7776#1 GAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATG 374 consensus_7776#2 GAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGNGCAACGGGTATG 374 consensus_7776#0 GAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATG 595 *********************************************** ************ consensus_7776#1 GGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGG 434 consensus_7776#2 GGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGG 434 consensus_7776#0 GGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGG 655 ************************************************************ consensus_7776#1 ATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGG 494 consensus_7776#2 ATTTCCACGTGCTCAACTGGAACCCGGC-ACCAAGTTCTATCGTCGTATGGGTGCGCTGG 493 consensus_7776#0 ATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGT 715 **************************** ******** ********************* consensus_7776#1 ATTTAACCGAAGCCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGC 554 consensus_7776#2 ATTTAACCGAAGCCGAGAGTTGGCACTTTTATC--------------------------- 526 consensus_7776#0 ATTTAACCGAAACCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGC 775 *********** ********************* consensus_7776#1 TGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTC 614 consensus_7776#2 ------------------------------------------------------------ consensus_7776#0 TGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTC 835 consensus_7776#1 AAGTATTATCGAGAAATAGCAGGGCAGCACGGAGATGACCCGTTTGGTGTAATGATGAAC 674 consensus_7776#2 ------------------------------------------------------------ consensus_7776#0 AAGT-------------------------------------------------------- 839 consensus_7776#1 GCGCCGGTTTCTGAGAAAACCCTTCCTTAGTTCGATTCCCATCCAGGACTATAATAGACT 734 consensus_7776#2 ------------------------------------------------------------ consensus_7776#0 ------------------------------------------------------------ consensus_7776#1 TTATAATTATTCGGTCTTTGTATTATAATTAAG 767 consensus_7776#2 --------------------------------- consensus_7776#0 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||