These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1234 fasta sequence [GAAAGAGGAAGGAAACGTGGCATACACACAGAGGTCGACGATAGGTGTGACGCCGAAATATAAGAAACGAAAACTATTCATATATTTATTTATTGCTTAAAGTGCGATGCAACATGTGCGCATGC-AAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAA-ATATATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTGGAAGGGCAAAAGAAAAGGAAAAGAAATGGAATACCCTTATATACAC----ACACAC--ATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATTTTTTCAGGGCATACAAAGTATATGAGATAATTTGCATTTTTGA-GTGGGGAGCAATTT--GGGGCAGAGAGCGAAATAAGAAGCGATAAAGTACTAAACCCCCTCTCCGCCAAAACGGGCGATTATTTACAGTTGTTGATCGAGCATGTCTTCGATACAAGTAAAACAAACAAAAGTAACAAAATAAGTGGAACAACCATTAAGTGTGTGCAGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAAACGTCTCTCCCTTTTTCATTGCCCTGTTTCCAGTTTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAAATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTCAAAAAACAAAGAAAGACCCCCGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATGTCAAACCAAAATACCATCAGTGTTCAGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGC---AGTCAAAAGCCGCCAGCGCGCTCGTTCCGCACGTGCTTTCCGCACCAAAACAAGCGAAAACAATATTTCAATTGTACAAAAAATAACAAAAACTTTGGCAAACATTTGGCGACAAACCGAAAAAA] [-] EMBL AGA280536 [GAAAGAGGAAGGAAACGTGGCATACACACAGAGGTCGACGATAGGTGTGACGCCGAAATATAAGAAACGAAAACTATTCATATATTTATTTATTGCTTAAAGTGCGATGCAACATGTGCGCATGCAAAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAA ATATATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTGGAAGGGCAAAAAAAA ] [-] EMBL AGA281746 [ ACACACAGAGGTCGACGATAGGTGTGACGCCGAAATATAAGAAACGAAAACTATTCATATATTTATTTATTGCTTAAAGTGCGATGCAACATGTGCGCATGCAAAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAA ATATATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTGGAAGGGCAAAAGAAAAGGAAAAGAAATGGAATACCCTTATATACACACAAACACACATATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATTTTTTCAGGGCATACAAAGTATATGAGATAATTTGCATTTTTGA GAGGGGAGCAATTTTCGGGGCAGAG ] [+] EMBL BX625105 [ AAGTGCGATGCAACATGTGCGCATGC AAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAATATATATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTCGAAGGGCAAAAGAAAAGGAAAAGAAATGTAAAACCCTTATATACAC ACACAC ATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATTTTTTCAGGGCATACAAAGTATATGAGATAATTTGCATTTTTGA GTGGGGAGCAATTT GTGGTAGAGAGCGAAATAAGAAGCGATAAAGTACTAAACCCCCTCTCCGCCAAAACGGGCGATTATTTACAGTTGTTGATCGAGCATGTCTTCGATACAAGTAAAACAAACAAAAGTAACAAAATAAGTGGAACAACCATTAAGTGTGTGCAGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCT ] [+] EMBL BX619478 [ CAAAGTATATGAGATAATTTGCATTTTNGAGGTGAGGAGCAGTTTC GGGGC NGAGCGAAATAGAAAGCGATAAAGTACTAAACCCCCTCTCCGCCAAAACGGGCGATTATTTACAGTTGTTGACCGAGCATGTCTTCGATACAAGTAAAACAAACAAAAGTAACAAAGTAAGTGGAACAACCATTAAGTGTGTGCTGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGA ] [+] EMBL BM610865 [ ccgCAACCATTAAGTGTGTGCAGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAAACGTCTCTCCCTTTTTCATTGCCCTGTTTCCAGTTTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAAATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTCAAAAAACAAAGAAAGACCCCCGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATGTCAAACCAAAATACCATCAGTGTTCAGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGC AGTCAAAAGCCGCCAGCGCGCTCGTTCCGCACGTGCTTTCCGCAC ] [+] EMBL BM617269 [ ccgGTGCAGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAAACGTCTCTCCCTTTTTCATTGCCCTGTTTCCAGTTTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAAATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTCAAAAAACAAAGAAAGACCCCCGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATGTCAAACCAAAATACCATCAGTGTTCAGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGC AGTCAAAAGCCGCCAGCGCGCTCGTTCCGCACGTGCTTTCCGCACCAAAACAAGCGAAAACAATATTTCAATTGTACAAAAAATAACAAAAACTTTGGCAAACATTTGGCGACAAACCGAAAAAA] [+] EMBL BM618740 [ ccgATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAACCGTCTCTCCCTTTTTCATTGCCCTG TTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAAATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTC AAAAACAAAGAGAGATCCCCGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATTTCAAACCAAAATACCATCAGTGTTCAGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGCAAAAGTGAAAAGCCGCCAGCGCGCTCGTGCCGCATGTGCTTTCCGCACCAAAACAAGCGAAAACAATATTTCAATTGTACAAAAAATAGC AAAACTTTGGGAAAa ] consensusID : consensus_7782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [CCAGAATCGCACGAGGTGACACGAGCGCAAGCAGCAACACNCTCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTCGAAGGGCAAAAGAAAAGGAAAAGAAATGTAAAACCCTTATATACACACACACATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATGTTTTTCAGGGGCATACAAAGTATATGAGATAATTTGCATTTTTGAGTGGGGAGCAATTTGTGGTAGAGAGCGAAATAAGAAGCGAGTAAAGTACTAAACCCCACGTCTCCGCCGAAAACGGGCGACTTATGTTACAAGTTGTTTGATCGAGGCATGTCTTTCGATACNAAGTNAAACAAGACCAANAGAGTAACGACAAACTACAGGTGGGAACAAGCCCAGTTAAAGGTGGTGGTGCCAGACAGCNATTTAGGNCAACATGGCCANGNCAAGGCGGCAANTAATTTAAGGCC] [+] EMBL BX469232 [CCAGAATCGCACGAGGTGACACGAGCGCAAGCAGCAACACNCTCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTCGAAGGGCAAAAGAAAAGGAAAAGAAATGTAAAACCCTTATATACACACACACATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATGTTTTTCAGGGGCATACAAAGTATATGAGATAATTTGCATTTTTGAGTGGGGAGCAATTTGTGGTAGAGAGCGAAATAAGAAGCGAGTAAAGTACTAAACCCCACGTCTCCGCCGAAAACGGGCGACTTATGTTACAAGTTGTTTGATCGAGGCATGTCTTTCGATACNAAGTNAAACAAGACCAANAGAGTAACGACAAACTACAGGTGGGAACAAGCCCAGTTAAAGGTGGTGGTGCCAGACAGCNATTTAGGNCAACATGGCCANGNCAAGGCGGCAANTAATTTAAGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7782#0 GAAAGAGGAAGGAAACGTGGCATACACACAGAGGTCGACGATAGGTGTGACGCCGAAATA 60 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TAAGAAACGAAAACTATTCATATATTTATTTATTGCTTAAAGTGCGATGCAACATGTGCG 120 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 CATGCAAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAAATA 180 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTC 240 consensus_7782#1 ----------CCAGAATCGCACGAGGTGACACGAGCGCAAGCAGCAACACNCTCAAATTC 50 * **** * **************** * ** ******** consensus_7782#0 TCGCTTTAAAACAAAATCACCAATGCTGCTTTTTGGAAGGGCAAAAGAAAAGGAAAAGAA 300 consensus_7782#1 TCGCTTTAAAACAAAATCACCAATGCTGCTTTTTCGAAGGGCAAAAGAAAAGGAAAAGAA 110 ********************************** ************************* consensus_7782#0 ATGGAATACCCTTATATACACACACACATTGCATACACCAGGCATCACCCCCAGGCACCA 360 consensus_7782#1 ATGTAAAACCCTTATATACACACACACATTGCATACACCAGGCATCACCCCCAGGCACCA 170 *** ** ***************************************************** consensus_7782#0 AGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAAT- 419 consensus_7782#1 AGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATG 230 *********************************************************** consensus_7782#0 TTTTTCAGGG-CATACAAAGTATATGAGATAATTTGCATTTTTGAGTGGGGAGCAATTTG 478 consensus_7782#1 TTTTTCAGGGGCATACAAAGTATATGAGATAATTTGCATTTTTGAGTGGGGAGCAATTTG 290 ********** ************************************************* consensus_7782#0 GGGCAGAGAGCGAAATAAGAAGCGA-TAAAGTACTAAACCCCC--TCTCCGCC-AAAACG 534 consensus_7782#1 TGGTAGAGAGCGAAATAAGAAGCGAGTAAAGTACTAAACCCCACGTCTCCGCCGAAAACG 350 ** ********************* **************** ******** ****** consensus_7782#0 GGCGA-TTAT-TTACA-GTTGTT-GATCGAG-CATGTCTT-CGATACAAGTAAAACAAAC 588 consensus_7782#1 GGCGACTTATGTTACAAGTTGTTTGATCGAGGCATGTCTTTCGATAC---NAAGTNAAAC 407 ***** **** ***** ****** ******* ******** ****** ** **** consensus_7782#0 AAAAGTAACAAAATAAGTGGAACAACCATTAAGTGTGTGCAGAAGCA-TTAGCAATGCAG 647 consensus_7782#1 AAGACCAANAGAGTAA---CGACAAACTACAGGTGGGAACAAGCCCAGTTAAAGGTGGTG 464 ** * ** * * *** **** * * *** * ** ** *** ** * consensus_7782#0 CAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTAC 707 consensus_7782#1 GTGCCAGACAGCNATTT----AGGNCAACATGGCCANGNCAAG-GCGGCAANTAATTTAA 519 * * * * * * ** * *** * * ** ** consensus_7782#0 GACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAA 767 consensus_7782#1 GGCC-------------------------------------------------------- 523 * * consensus_7782#0 GCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTT 827 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAAACGTCTCTCCCTTTTTC 887 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 ATTGCCCTGTTTCCAGTTTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAA 947 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 ATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTCAAAAAACAAAGAAAGACCCC 1007 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 CGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATGTCAAACCAAAATACCATCAGTGTTC 1067 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 AGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGCAGTCAAAAGCCGCCAGCG 1127 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 CGCTCGTTCCGCACGTGCTTTCCGCACCAAAACAAGCGAAAACAATATTTCAATTGTACA 1187 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 AAAAATAACAAAAACTTTGGCAAACATTTGGCGACAAACCGAAAAAA 1234 consensus_7782#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||